Tracey Ferrara

dblp:339/1245 · also Tracey M. Ferrara · DBLP profile ↗
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5ranked-venue papers
0as first author
5since 2021 · last 2023
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 5 · 5 since 2021
YearPublicationVenuePosition
2023 Systematic replication of smoking disease associations using survey responses and EHR data in the All of Us Research Program
abstract
OBJECTIVE: The All of Us Research Program (All of Us) aims to recruit over a million participants to further precision medicine. Essential to the verification of biobanks is a replication of known associations to establish validity. Here, we evaluated how well All of Us data replicated known cigarette smoking associations. MATERIALS AND METHODS: We defined smoking exposure as follows: (1) an EHR Smoking exposure that used International Classification of Disease codes; (2) participant provided information (PPI) Ever Smoking; and, (3) PPI Current Smoking, both from the lifestyle survey. We performed a phenome-wide association study (PheWAS) for each smoking exposure measurement type. For each, we compared the effect sizes derived from the PheWAS to published meta-analyses that studied cigarette smoking from PubMed. We defined two levels of replication of meta-analyses: (1) nominally replicated: which required agreement of direction of effect size, and (2) fully replicated: which required overlap of confidence intervals. RESULTS: PheWASes with EHR Smoking, PPI Ever Smoking, and PPI Current Smoking revealed 736, 492, and 639 phenome-wide significant associations, respectively. We identified 165 meta-analyses representing 99 distinct phenotypes that could be matched to EHR phenotypes. At P < .05, 74 were nominally replicated and 55 were fully replicated. At P < 2.68 × 10-5 (Bonferroni threshold), 58 were nominally replicated and 40 were fully replicated. DISCUSSION: Most phenotypes found in published meta-analyses associated with smoking were nominally replicated in All of Us. Both survey and EHR definitions for smoking produced similar results. CONCLUSION: This study demonstrated the feasibility of studying common exposures using All of Us data.
David J. Schlueter, Lina M. Sulieman, Huan Mo, Jacob M. Keaton, Tracey Ferrara, Ariel Williams, Onajia J. Stubblefield, Chenjie Zeng, Tam C. Tran, Lisa Bastarache, Anav Babbar, Andrea H. Ramirez, Slavina Goleva, Joshua C. Denny
J. Am. Medical Informatics Assoc.5
2022 Impact of COVID-19 on mental health outcomes in the All of Us Research Program
Onajia J. Stubblefield, David J. Schlueter, Jacob Keaton, Ariel Williams, Slavina Goleva, Tracey Ferrara, Chenjie Zeng, Huan Mo, Joshua C. Denny
AMIA6
2022 Comparing Effect Sizes in Covid Positive Phenomic Profiles
Ariel Williams, David J. Schlueter, Jacob Keaton, Tracey Ferrara, Onajia J. Stubblefield, Kyle Webb, Slavina Goleva, Chenjie Zeng, Huan Mo, Thomas Cassini, Joshua C. Denny
AMIA4
2021 Systematic replication of smoking disease associations in the All of Us Research Program
David J. Schlueter, Lina M. Sulieman, Jacob M. Keaton, Tracey Ferrara, Kyle Webb, Ariel Williams, Francis Ratsimbazafy, Lisa Bastarache, Andrea H. Ramirez, Joshua C. Denny
AMIA4
2021 Comparing the Phenomic Profile of All of Us Research Program and National COVID Cohort Collaborative
Kyle P. Webb, David J. Schlueter, Jacob Keaton, Tracey Ferrara, Ariel Williams, Joshua C. Denny
AMIA4