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T. Rouxel

dblp:34/4904 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 1993
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › biological database
metabolic pathway database
0.011993
METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database · Comput. Appl. Biosci. 1993
Bioinformatics and computational biology › systems biology
metabolic network modeling
0.011993
METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database · Comput. Appl. Biosci. 1993

Methods — techniques the papers use, named apart from their topics

relational database · 0.0graphical interface · 0.0
YearPublicationVenuePosition
1993 METALGEN.DB: metabolism linked to the genome of Escherichia coli, a graphics-oriented database
abstract
The table of 'biochemical pathways' published by Boehringer is considered as the most exhaustive document dealing with intermediary metabolism. The present work consisted of constructing a database in which is collected everything known to date about intermediary metabolism: metabolic pathways, bioreactions, metabolites, enzymatic activities, genes and regulation. Data on genes make it possible to establish a link with existing computer structures specialized for genomic sequences. The present structure of the database presented here consists of three environments. The first environment is graphic; it is modeled upon the Boehringer table, but is more convenient to use. The second environment provides the user with all kinds of manipulations of data (entries, corrections, deletions, consistency, limiting redundancy, etc.). These operations either are automatic or depend on a user-friendly interface (menus selected with the mouse) and so allow biologists at all levels to use the database and to develop it for their own particular needs. Finally, the third environment offers various procedures that make it possible to carry out multicriteria research on all the data in the database at once. This database can thus be substituted for the Boehringer table as a standard reference. It is also a tool that can be used to develop information systems not only in the domain of metabolism but also in the study of genomes (modeling, analysis of data, predictions, etc.).
T. Rouxel, Antoine Danchin, Alain Hénaut
Comput. Appl. Biosci.1