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Misha Bilenky

dblp:36/2082 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2006
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › gene regulation › regulatory element
regulatory element annotation
0.112006
ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation · Bioinform. 2006
Bioinformatics and computational biology › gene regulation
regulatory genomics
0.112006
ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation · Bioinform. 2006
Bioinformatics and computational biology
gene regulation
0.012006
ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation · Bioinform. 2006
Bioinformatics and computational biology › gene regulation › transcription factor binding
transcription factor binding site
0.012006
ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation · Bioinform. 2006

Methods — techniques the papers use, named apart from their topics

cross-referencing · 0.1community curation · 0.1
YearPublicationVenuePosition
2006 ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation
abstract
MOTIVATION: Our understanding of gene regulation is currently limited by our ability to collectively synthesize and catalogue transcriptional regulatory elements stored in scientific literature. Over the past decade, this task has become increasingly challenging as the accrual of biologically validated regulatory sequences has accelerated. To meet this challenge, novel community-based approaches to regulatory element annotation are required. SUMMARY: Here, we present the Open Regulatory Annotation (ORegAnno) database as a dynamic collection of literature-curated regulatory regions, transcription factor binding sites and regulatory mutations (polymorphisms and haplotypes). ORegAnno has been designed to manage the submission, indexing and validation of new annotations from users worldwide. Submissions to ORegAnno are immediately cross-referenced to EnsEMBL, dbSNP, Entrez Gene, the NCBI Taxonomy database and PubMed, where appropriate. AVAILABILITY: ORegAnno is available directly through MySQL, Web services, and online at http://www.oreganno.org. All software is licensed under the Lesser GNU Public License (LGPL).
Stephen B. Montgomery, Obi L. Griffith, Monica C. Sleumer, Casey M. Bergman, Misha Bilenky, Erin Pleasance, Y. Prychyna, Steven J. M. Jones
Bioinform.5