(Partial) differential equations (PDEs) are fundamental tools for describing natural phenomena, making their solution crucial in science and engineering. While traditional methods, such as the finite element method, provide reliable solutions, their accuracy is often tied to the use of computationally intensive fine meshes. Moreover, they do not naturally account for measurements or prior solutions, and any change in the problem parameters requires results to be fully recomputed. Neural network-based approaches, such as physics-informed neural networks and neural operators, offer a mesh-free alternative by directly fitting those models to the PDE solution. They can also integrate prior knowledge and tackle entire families of PDEs by simply aggregating additional training losses. Nevertheless, they are highly sensitive to hyperparameters such as collocation points and the weights associated with each loss. This paper addresses these challenges by developing a science-constrained learning (SCL) framework. It demonstrates that finding a (weak) solution of a PDE is equivalent to solving a constrained learning problem with worst-case losses. This explains the limitations of previous methods that minimize the expected value of aggregated losses. SCL also organically integrates structural constraints (e.g., invariances) and (partial) measurements or known solutions. The resulting constrained learning problems can be tackled using a practical algorithm that yields accurate solutions across a variety of PDEs, neural network architectures, and prior knowledge levels without extensive hyperparameter tuning and sometimes even at a lower computational cost.

Modeling the transport dynamics of natural processes from population-level observations is a ubiquitous problem in the natural sciences. Such models rely on key assumptions about the underlying process in order to enable faithful learning of governing dynamics that mimic the actual system behavior. The de facto assumption in current approaches relies on the principle of least action that results in gradient field dynamics and leads to trajectories minimizing an energy functional between two probability measures. However, many real-world systems, such as cell cycles in single-cell RNA, are known to exhibit non-gradient, periodic behavior, which fundamentally cannot be captured by current state-of-the-art methods such as flow and bridge matching. In this paper, we introduce Curly Flow Matching (Curly-FM), a novel approach that is capable of learning non-gradient field dynamics by designing and solving a Schrödinger bridge problem with a non-zero drift reference process---in stark contrast to typical zero-drift reference processes---which is constructed using inferred velocities in addition to population snapshot data. We showcase Curly-FM by solving the trajectory inference problems for single cells, computational fluid dynamics, and ocean currents with approximate velocities. We demonstrate that Curly-FM can learn trajectories that better match both the reference process and population marginals. Curly-FM expands flow matching models beyond the modeling of populations and towards the modeling of known periodic behavior in physical systems. Our code repository is accessible at: https://github.com/kpetrovicc/curly-flow-matching.git