Aaron Agarunov

dblp:369/5957 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2023
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein design
de novo protein design
0.712023
CELLE-2: Translating Proteins to Pictures and Back with a Bidirectional Text-to-Image Transformer · NeurIPS 2023
Bioinformatics and computational biology
protein design
0.712023
CELLE-2: Translating Proteins to Pictures and Back with a Bidirectional Text-to-Image Transformer · NeurIPS 2023
Bioinformatics and computational biology › protein function prediction
protein subcellular localization prediction
0.712023
CELLE-2: Translating Proteins to Pictures and Back with a Bidirectional Text-to-Image Transformer · NeurIPS 2023

Methods — techniques the papers use, named apart from their topics

text-to-image generation · 0.7bidirectional transformer · 0.7
YearPublicationVenuePosition
2023 CELLE-2: Translating Proteins to Pictures and Back with a Bidirectional Text-to-Image Transformer
abstract
We present CELL-E 2, a novel bidirectional transformer that can generate images depicting protein subcellular localization from the amino acid sequences (and vice versa). Protein localization is a challenging problem that requires integrating sequence and image information, which most existing methods ignore. CELL-E 2 extends the work of CELL-E, not only capturing the spatial complexity of protein localization and produce probability estimates of localization atop a nucleus image, but also being able to generate sequences from images, enabling de novo protein design. We train and finetune CELL-E 2 on two large-scale datasets of human proteins. We also demonstrate how to use CELL-E 2 to create hundreds of novel nuclear localization signals (NLS). Results and interactive demos are featured at https://bohuanglab.github.io/CELL-E_2/.
Emaad Khwaja, Yun Song, Aaron Agarunov
NeurIPS3