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Hailey Barrell

dblp:369/8033 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2023
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 50% Medical and health informatics · 50%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Medical and health informatics
brain-computer interface
0.712023
Bypassing spike sorting: Density-based decoding using spike localization from dense multielectrode probes · NeurIPS 2023
Bioinformatics and computational biology › computational neuroscience
neural decoding
0.712023
Bypassing spike sorting: Density-based decoding using spike localization from dense multielectrode probes · NeurIPS 2023

Methods — techniques the papers use, named apart from their topics

variational inference · 0.7mixture of gaussians · 0.7
YearPublicationVenuePosition
2023 Bypassing spike sorting: Density-based decoding using spike localization from dense multielectrode probes
abstract
Neural decoding and its applications to brain computer interfaces (BCI) are essential for understanding the association between neural activity and behavior. A prerequisite for many decoding approaches is spike sorting, the assignment of action potentials (spikes) to individual neurons. Current spike sorting algorithms, however, can be inaccurate and do not properly model uncertainty of spike assignments, therefore discarding information that could potentially improve decoding performance. Recent advances in high-density probes (e.g., Neuropixels) and computational methods now allow for extracting a rich set of spike features from unsorted data; these features can in turn be used to directly decode behavioral correlates. To this end, we propose a spike sorting-free decoding method that directly models the distribution of extracted spike features using a mixture of Gaussians (MoG) encoding the uncertainty of spike assignments, without aiming to solve the spike clustering problem explicitly. We allow the mixing proportion of the MoG to change over time in response to the behavior and develop variational inference methods to fit the resulting model and to perform decoding. We benchmark our method with an extensive suite of recordings from different animals and probe geometries, demonstrating that our proposed decoder can consistently outperform current methods based on thresholding (i.e. multi-unit activity) and spike sorting. Open source code is available at https://github.com/yzhang511/density_decoding.
Yizi Zhang, Tianxiao He, Julien Boussard, Charles Windolf, Olivier Winter, Eric Trautmann, Noam Roth, Hailey Barrell, Mark Churchland, Nicholas A. Steinmetz, Erdem Varol, Cole L. Hurwitz, Liam Paninski
NeurIPS8