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Takashi Naka

dblp:37/3775 · DBLP profile ↗
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2ranked-venue papers
0as first author
0since 2021 · last 2017
0000-0003-4258-1926ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Computer architecture, parallel and distributed computing, and storage systems
1 paper
Distributed systems · 100%

Topics — the 5 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › systems biology
biochemical simulation
0.012004
OBIYagns: a grid-based biochemical simulator with a parameter estimator · Bioinform. 2004
Bioinformatics and computational biology › systems biology
computational systems biology
0.012004
OBIYagns: a grid-based biochemical simulator with a parameter estimator · Bioinform. 2004
Bioinformatics and computational biology › biological network › network biology
genetic network simulation
0.012004
OBIYagns: a grid-based biochemical simulator with a parameter estimator · Bioinform. 2004
Bioinformatics and computational biology › systems biology
parameter estimation
0.012004
OBIYagns: a grid-based biochemical simulator with a parameter estimator · Bioinform. 2004
Distributed systems
grid computing
0.012004
OBIYagns: a grid-based biochemical simulator with a parameter estimator · Bioinform. 2004

Methods — techniques the papers use, named apart from their topics

parameter estimation · 0.1ordinary differential equation solver · 0.1
YearPublicationVenuePosition
2017 Exhaustive Analysis for the Effects of a Feedback Regulation on the Bi-Stability in Cellular Signaling Systems
Chinasa Sueyoshi, Takashi Naka
ICCSA (1)2
2004 OBIYagns: a grid-based biochemical simulator with a parameter estimator
abstract
UNLABELLED: OBIYagns (yet another gene network simulator) is a biochemical system simulator that comprises a multiple-user Web-based graphical interface, an ordinary differential equation solver and a parameter estimators distributed over an open bioinformatics grid (OBIGrid). This grid-based biochemical simulation system can achieve high performance and provide a secure simulation environment for estimating kinetic parameters in an acceptable time period. OBIYagns can be applied to larger system biology-oriented simulation projects. AVAILABILITY: OBIYagns example models, methods and user guide are available at https://access.obigrid.org/yagns/ SUPPLEMENTARY INFORMATION: Please refer to Bioinformatics online.
Shuhei Kimura, Takuji Kawasaki, Mariko Okada, Takashi Naka, Fumikazu Konishi, Akihiko Konagaya
Bioinform.4