Exploring how local perturbations of cortical activity propagate across the brain network not only helps us understanding causal mechanisms of brain networks, but also offers a network insight into neurobiological mechanisms for transcranial magnetic stimulation (TMS) treatment response. The concurrent combination of TMS and electroencephalography (EEG) enables researchers to track the TMS-evoked activity, defined here as scalp-recorded electrical signals reflecting the brain's response to TMS, with millisecond-level temporal resolution. Based on this technique, we proposed a quantitative framework which combined sparse non-negative matrix factorization and stage-dependent effective connectivity methods to infer the causal pathways in TMS-evoked brain responses. We found that single-pulse TMS firstly induces local activity in the directly stimulated regions (left primary motor cortex, M1), and then propagates to the contralateral hemisphere and other brain regions. Finally, it propagates back from the contralateral region (right M1) to the stimulation region (left M1). This study provides preliminary evidence demonstrating how local perturbations propagate through brain networks to influence various cortical regions, and offers insights into the neural mechanism of TMS-evoked brain responses from a network perspective.

MOTIVATION: Gut dysbiosis is closely associated with obesity and related metabolic diseases including type 2 diabetes (T2D) and nonalcoholic fatty liver disease (NAFLD). The gut microbial features and biomarkers have been increasingly investigated in many studies, which require further validation due to the limited sample size and various confounding factors that may affect microbial compositions in a single study. So far, it lacks a comprehensive bioinformatics pipeline providing automated statistical analysis and integrating multiple independent studies for cross-validation simultaneously. RESULTS: OBMeta aims to streamline the standard metagenomics data analysis from diversity analysis, comparative analysis, and functional analysis to co-abundance network analysis. In addition, a curated database has been established with a total of 90 public research projects, covering three different phenotypes (Obesity, T2D, and NAFLD) and more than five different intervention strategies (exercise, diet, probiotics, medication, and surgery). With OBMeta, users can not only analyze their research projects but also search and match public datasets for cross-validation. Moreover, OBMeta provides cross-phenotype and cross-intervention-based advanced validation that maximally supports preliminary findings from an individual study. To summarize, OBMeta is a comprehensive web server to analyze and validate gut microbial features and biomarkers for obesity-associated metabolic diseases. AVAILABILITY AND IMPLEMENTATION: OBMeta is freely available at: http://obmeta.met-bioinformatics.cn/.