Demo Data from VLDB 2026 / reviewers in the wild / expert
Hoon-Min Kim
dblp:370/6113
· DBLP profile ↗
1ranked-venue papers
0as first author
1since 2021 · last 2023
0009-0007-4881-722XORCID · reported
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 1 heaviest of 1, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › systems biology
computational systems biology |
0.7 | 1 | 2023 | Global stabilizing control of large-scale biomolecular regulatory networks · Bioinform. 2023 |
Methods — techniques the papers use, named apart from their topics
strongly connected components · 0.7feedback vertex sets · 0.7canalization analysis · 0.7boolean network dynamics · 0.7
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2023 | Global stabilizing control of large-scale biomolecular regulatory networksabstractMOTIVATION: Cellular behavior is determined by complex non-linear interactions between numerous intracellular molecules that are often represented by Boolean network models. To achieve a desired cellular behavior with minimal intervention, we need to identify optimal control targets that can drive heterogeneous cellular states to the desired phenotypic cellular state with minimal node intervention. Previous attempts to realize such global stabilization were based solely on either network structure information or simple linear dynamics. Other attempts based on non-linear dynamics are not scalable. RESULTS: Here, we investigate the underlying relationship between structurally identified control targets and optimal global stabilizing control targets based on non-linear dynamics. We discovered that optimal global stabilizing control targets can be identified by analyzing the dynamics between structurally identified control targets. Utilizing these findings, we developed a scalable global stabilizing control framework using both structural and dynamic information. Our framework narrows down the search space based on strongly connected components and feedback vertex sets then identifies global stabilizing control targets based on the canalization of Boolean network dynamics. We find that the proposed global stabilizing control is superior with respect to the number of control target nodes, scalability, and computational complexity. AVAILABILITY AND IMPLEMENTATION: We provide a GitHub repository that contains the DCGS framework written in Python as well as biological random Boolean network datasets (https://github.com/sugyun/DCGS). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Sugyun An, Soyeong Jang, Sang-Min Park, Chun-Kyung Lee, Hoon-Min Kim, Kwang-Hyun Cho |
Bioinform. | 5 |