Sequence labeling problems arise in several real-world applications such as healthcare and robotics. In many such applications, sequence data are irregularly sampled and are of varying complexities. Recently, efforts have been made to develop neural ODE-based architectures to model the evolution of hidden states continuously in time, to address irregularly sampled sequence data. However, they assume a fixed architectural depth and limit their flexibility to adapt to data sets with varying complexities. We propose the neural wave equation, a novel deep learning method inspired by the wave equation, to address this through continuous modeling of depth. Neural Wave Equation models the evolution of hidden states continuously across time as well as depth by using a non-homogeneous wave equation parameterized by a neural network. Through d'Alembert's analytical solution of the wave equation, we also show that the neural wave equation provides denser connections across the hidden states, allowing for better modeling capability. We conduct experiments on several sequence labeling problems involving irregularly sampled sequence data and demonstrate the superior performance of the proposed neural wave equation model.