Mobarak I. Hoque

dblp:410/7752 · DBLP profile ↗
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6ranked-venue papers
0as first author
6since 2021 · last 2026
0000-0002-7162-2822ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 5 · 5 since 2021Graphics, computer vision, multimedia, augmented reality and games · 4 · 4 since 2021Artificial intelligence and machine learning · 1 · 1 since 2021
YearPublicationVenuePosition
2026 Surgical AI Copilot: Energy-Based Fourier Gradient Low-Rank Adaptation for Surgical LLM Agent Reasoning and Planning
abstract
Image-guided surgery demands adaptive, real-time decision support, yet static AI models struggle with structured task planning and providing interactive guidance. Large language models (LLMs)-powered agents offer a promising solution by enabling dynamic task planning and predictive decision support. Despite recent advances, the absence of surgical agent datasets and robust parameter-efficient fine-tuning techniques limits the development of LLM agents capable of complex intraoperative reasoning. In this paper, we introduce Surgical AI Copilot, an LLM agent for image-guided pituitary surgery, capable of conversation, planning, and task execution in response to queries involving tasks such as MRI tumor segmentation, endoscope anatomy segmentation, overlaying preoperative imaging with intraoperative views, instrument tracking, and surgical visual question answering (VQA). To enable structured agent planning, we develop the PitAgent dataset, a surgical context-aware planning dataset covering surgical tasks like workflow analysis, instrument localization, anatomical segmentation, and query-based reasoning. Additionally, we propose DEFT-GaLore, a Deterministic Energy-based Fourier Transform (DEFT) gradient projection technique for efficient low-rank adaptation of recent LLMs (e.g., LLaMA 3.2, Qwen 2.5), enabling their use as surgical agent planners. We extensively validate our agent's performance and the proposed adaptation technique against other state-of-the-art low-rank adaptation methods on agent planning and prompt generation tasks, including a zero-shot surgical VQA benchmark, demonstrating the significant potential for truly efficient and scalable surgical LLM agents in real-time operative settings.
Jiayuan Huang, Runlong He, Danyal Z. Khan, Evangelos B. Mazomenos, Danail Stoyanov, Hani J. Marcus, Linzhe Jiang, Matthew J. Clarkson, Mobarak I. Hoque
AAAI9
2026 PitVQA++: Vector Matrix-Low-Rank Adaptation for Open-Ended Visual Question Answering in Pituitary Surgery
abstract
Vision-Language Models (VLMs) in visual question answering (VQA) offer a unique opportunity to enhance intra-operative decision-making, promote intuitive interactions, and significantly advance surgical education. However, the development of VLMs for surgical VQA is challenging due to limited datasets and the risk of overfitting and catastrophic forgetting during full fine-tuning of pretrained weights. While parameter-efficient techniques like Low-Rank Adaptation (LoRA) and Matrix of Rank Adaptation (MoRA) address adaptation challenges, their uniform parameter distribution overlooks the feature hierarchy in deep networks, where earlier layers, that learn general features, require more parameters than later ones. This work introduces PitVQA++ with an Open-ended PitVQA dataset and vector matrix-low-rank adaptation (Vector-MoLoRA), an innovative VLM fine-tuning approach for adapting GPT-2 to pituitary surgery. Open-Ended PitVQA comprises 109,173 frames from 25 procedural videos with 795,270 question-answer sentence pairs, covering key surgical elements such as phase and step recognition, context understanding, tool detection, localization, and interactions recognition. Vector-MoLoRA incorporates the principles of LoRA and MoRA to develop a matrix-low-rank adaptation strategy that employs rank vectors to allocate more parameters to earlier layers, gradually reducing them in the later layers. Our approach, validated on the Open-Ended PitVQA and EndoVis18-VQA datasets, effectively mitigates catastrophic forgetting while significantly enhancing performance over recent baselines. Performance-rejection analysis further highlights Vector-MoLoRA's enhanced reliability and trustworthiness in handling uncertain predictions. Our source code and dataset is available at https://github.com/HRL-Mike/PitVQA-Plus.
Runlong He, Danyal Z. Khan, Evangelos B. Mazomenos, Hani J. Marcus, Danail Stoyanov, Matthew J. Clarkson, Mobarak I. Hoque
IEEE Trans. Medical Imaging7
2025 SurgicalGS: Dynamic 3D Gaussian Splatting for Accurate Robotic-Assisted Surgical Scene Reconstruction
Jialei Chen 0007, Mobarak I. Hoque, Francisco Vasconcelos 0001, Danail Stoyanov, Daniel S. Elson, Baoru Huang
MICCAI (11)3
2025 SurgTPGS: Semantic 3D Surgical Scene Understanding with Text Promptable Gaussian Splatting
Yiming Huang 0007, Long Bai 0008, Beilei Cui, Kun Yuan 0004, Guankun Wang, Mobarak I. Hoque, Nicolas Padoy, Nassir Navab, Hongliang Ren 0001
MICCAI (9)6
2025 Endo-FASt3r: Endoscopic Foundation Model Adaptation for Structure from Motion
abstract
Accurate depth and camera pose estimation is essential for achieving high-quality 3D visualisations in robotic-assisted surgery. Despite recent advancements in foundation model adaptation to monocular depth estimation of endoscopic scenes via self-supervised learning (SSL), no prior work has explored their use for pose estimation. These methods rely on low rank-based adaptation approaches, which constrain model updates to a low-rank space. We propose Endo-FASt3r, the first monocular SSL depth and pose estimation framework that uses foundation models for both tasks. We extend the Reloc3r relative pose estimation foundation model by designing Reloc3rX, introducing modifications necessary for convergence in SSL. We also present DoMoRA, a novel adaptation technique that enables higher-rank updates and faster convergence. Experiments on the SCARED dataset show that Endo-FASt3r achieves a substantial $$10\%$$ improvement in pose estimation and a $$2\%$$ improvement in depth estimation over prior work. Similar performance gains on the Hamlyn and StereoMIS datasets reinforce the generalisability of Endo-FASt3r across different datasets. Our code is available at: https://github.com/Mona-ShZeinoddin/Endo_FASt3r.git .
Mona Sheikh Zeinoddin, Mobarak I. Hoque, Zafer Tandogdu, Greg Shaw, Matthew J. Clarkson, Evangelos B. Mazomenos, Danail Stoyanov
MICCAI (11)2
2025 Controllable illumination invariant GAN for diverse temporally-consistent surgical video synthesis
Long Chen 0019, Mobarak I. Hoque, Zhe Min, Matthew J. Clarkson, Thomas Dowrick
Medical Image Anal.2