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Mohamed Sabri Hafidi

dblp:415/9760 · DBLP profile ↗
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1ranked-venue papers
1as first author
1since 2021 · last 2025
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Databases, data management, data science and information retrieval · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Databases, data mining, and information retrieval
1 paper
Data models and query languages · 77% Database system architecture and tuning · 23%
Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › genomics
genomic data management
0.912025
Relational Data Models for Genetic VCF data · Proc. VLDB Endow. 2025
Data models and query languages
relational model
0.912025
Relational Data Models for Genetic VCF data · Proc. VLDB Endow. 2025

Methods — techniques the papers use, named apart from their topics

array-based data models · 1.7JSON data structures · 1.7
YearPublicationVenuePosition
2025 Relational Data Models for Genetic VCF data
abstract
The Variant Call Format (VCF) and its binary counterpart (BCF) are commonly used in bioinformatics for storing gene sequence data. While VCF files provide compact storage, they require specific tools and scripts for querying, thereby missing the rich functionality arsenal of database management systems and their potential for integration in multiomics pipelines. In this paper, we leverage Relational Database Management Systems (RDBMS) to enhance efficiency and flexibility in storing and querying large-scale genetic datasets. We map the VCF file structure to narrow, wide, and array-based data models that are further refined using JSON data structures, resulting in eight data models. Our experimental evaluation shows that RDBMS provide competitive performance in comparison with specialized state-of-the-art tools while making full-fledged database capabilities available for genetic data analysis.
Mohamed Sabri Hafidi, Ozan Kahramanogullari, Anton Dignös, Johann Gamper
Proc. VLDB Endow.1