Stefan Zachow

dblp:42/294 · DBLP profile ↗
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22ranked-venue papers
2as first author
8since 2021 · last 2026
0000-0001-7964-3049ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 15 · 1 first-author · 5 since 2021Graphics, computer vision, multimedia, augmented reality and games · 11 · 2 first-author · 1 since 2021Artificial intelligence and machine learning · 3 · 2 since 2021Human-computer interaction and ubiquitous computing · 1 · 1 since 2021
YearPublicationVenuePosition
2026 Beyond benchmarks: Towards robust artificial intelligence bone segmentation in socio-technical systems
abstract
Despite the advances in automated medical image segmentation, AI models still underperform in various clinical settings, posing challenges for integration into real-world workflows. In this pre-registered prospective multicenter evaluation, we analyzed 20 state-of-the-art mandibular segmentation models across 19,218 segmentations of 1,000 clinically resampled CT/CBCT scans. Our results suggest that for a given model, segmentation accuracy can vary by up to 25% in Dice score as socio-technical factors such as voxel size, bone orientation, and patient conditions (e.g., osteosynthesis or pathology) shift from favorable to adverse. Higher sharpness, isotropic smaller voxels, and neutral orientation significantly improved results, while metallic osteosynthesis and anatomical complexity led to significant degradation. Our findings challenge the common view of AI models as “plug-and-play” tools and suggest evidence-based optimization recommendations for both clinicians and developers. This will in turn boost the integration of AI segmentation tools in routine healthcare.
Kunpeng Xie, Lennart Johannes Gruber, Martin Crampen, Elias Tappeiner, Maxime Gillot, Jan Schepers, Jiangchang Xu, Tobias Pankert, Michel Beyer, Negar Shahamiri, Reinier ten Brink, Gauthier Dot, Charlotte Weschke, Niels van Nistelrooij, Pieter-Jan Verhelst, Zhibin Xu, Jonas Bienzeisler, Ashkan Rashad, Tabea Flügge, Ross Cotton, Shankeeth Vinayahalingam, Robert R. Ilesan, Stefan Raith, Dennis Madsen, Constantin Seibold, Tong Xi 0001, Stefaan Bergé, Sven Nebelung, Oldrich Kodym, Osku Sundqvist, Florian M. Thieringer, Hans Lamecker, Antoine Coppens, Thomas Potrusil, Joep Kraeima, Max J. H. Witjes, Guomin Wu, Xiaojun Chen 0003, Adriaan Lambrechts, Stefan Zachow, Alexander Hermans, Daniel Truhn, Victor Alves, Jan Egger, Rainer Röhrig, Frank Hölzle, Behrus Hinrichs-Puladi
Expert Syst. Appl.44
2025 Shape-from-template with generalised camera
Agniva Sengupta, Stefan Zachow
Image Vis. Comput.2
2024 Learning continuous shape priors from sparse data with neural implicit functions
abstract
Statistical shape models are an essential tool for various tasks in medical image analysis, including shape generation, reconstruction and classification. Shape models are learned from a population of example shapes, which are typically obtained through segmentation of volumetric medical images. In clinical practice, highly anisotropic volumetric scans with large slice distances are prevalent, e.g., to reduce radiation exposure in CT or image acquisition time in MR imaging. For existing shape modeling approaches, the resolution of the emerging model is limited to the resolution of the training shapes. Therefore, any missing information between slices prohibits existing methods from learning a high-resolution shape prior. We propose a novel shape modeling approach that can be trained on sparse, binary segmentation masks with large slice distances. This is achieved through employing continuous shape representations based on neural implicit functions. After training, our model can reconstruct shapes from various sparse inputs at high target resolutions beyond the resolution of individual training examples. We successfully reconstruct high-resolution shapes from as few as three orthogonal slices. Furthermore, our shape model allows us to embed various sparse segmentation masks into a common, low-dimensional latent space - independent of the acquisition direction, resolution, spacing, and field of view. We show that the emerging latent representation discriminates between healthy and pathological shapes, even when provided with sparse segmentation masks. Lastly, we qualitatively demonstrate that the emerging latent space is smooth and captures characteristic modes of shape variation. We evaluate our shape model on two anatomical structures: the lumbar vertebra and the distal femur, both from publicly available datasets.
Tamaz Amiranashvili, David Lüdke, Hongwei Li 0004, Stefan Zachow, Bjoern Menze
Medical Image Anal.4
2024 Assessing the Effects of Sensory Modality Conditions on Object Retention across Virtual Reality and Projected Surface Display Environments
abstract
Haptic feedback reportedly enhances human interaction with 3D data, particularly improving the retention of mental representations of digital objects in immersive settings. However, the effectiveness of visuohaptic integration in promoting object retention across different display environments remains underexplored. Our study extends previous research on the retention effects of haptics from virtual reality to a projected surface display to assess whether earlier findings generalize to 2D environments. Participants performed a delayed match-to-sample task incorporating visual, haptic, and visuohaptic sensory feedback within a projected surface display environment. We compared error rates and response times across these sensory modalities and display environments. Our results reveal that visuohaptic integration significantly enhances object retention on projected surfaces, benefiting task performance across display environments. Our findings suggest that haptics can improve object retention without requiring fully immersive setups, offering insights for the design of interactive systems that assist professionals who rely on precise mental representations of digital objects.
Lucas Siqueira Rodrigues, Timo Torsten Schmidt, John Nyakatura, Stefan Zachow, Johann Habakuk Israel, Thomas Kosch
Proc. ACM Hum. Comput. Interact.4
2022 Landmark-Free Statistical Shape Modeling Via Neural Flow Deformations
David Lüdke, Tamaz Amiranashvili, Felix Ambellan, Ivan Ezhov, Bjoern Menze, Stefan Zachow
MICCAI (2)6
2021 Rigid motion invariant statistical shape modeling based on discrete fundamental forms: Data from the osteoarthritis initiative and the Alzheimer's disease neuroimaging initiative
Felix Ambellan, Stefan Zachow, Christoph von Tycowicz
Medical Image Anal.2
2021 VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images
Anjany Sekuboyina, Malek El Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li 0004, Giles Tetteh, Jan Kukacka, Christian Payer, Darko Stern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Leßmann, Yujin Hu, Tianfu Wang 0001, Dong Yang 0005, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Xinjun Ma, Christoph Angerman, Xin Wang 0113, Alexandre Kirszenberg, Élodie Puybareau, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He 0002, Chan Zeng, Zheng Xiangshang, Xu Liming, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai-Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubícek, Jirí Chmelík, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Bjoern Menze, Jan Kirschke
Medical Image Anal.29
2021 AutoImplant 2020-First MICCAI Challenge on Automatic Cranial Implant Design
abstract
The aim of this paper is to provide a comprehensive overview of the MICCAI 2020 AutoImplant Challenge. The approaches and publications submitted and accepted within the challenge will be summarized and reported, highlighting common algorithmic trends and algorithmic diversity. Furthermore, the evaluation results will be presented, compared and discussed in regard to the challenge aim: seeking for low cost, fast and fully automated solutions for cranial implant design. Based on feedback from collaborating neurosurgeons, this paper concludes by stating open issues and post-challenge requirements for intra-operative use. The codes can be found at https://github.com/Jianningli/tmi.
Jianning Li 0002, Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Jovani Estacio Cerquin, Christian Doenitz, Heiko Ramm, Xiaojun Chen 0003, Franco Matzkin, Virginia F. J. Newcombe, Enzo Ferrante, David Gage Ellis, Michele R. Aizenberg, Oldrich Kodym, Michal Spanel, Adam Herout, James G. Mainprize, Zachary Fishman, Michael R. Hardisty, Amirhossein Bayat, Suprosanna Shit, Bomin Wang, Zhi Liu 0004, Matthias Eder, Antonio Pepe 0003, Christina Schwarz-Gsaxner, Victor Alves, Ulrike Zefferer, Gord von Campe, Karin Pistracher, Ute Schäfer, Dieter Schmalstieg, Bjoern Menze, Ben Glocker, Jan Egger
IEEE Trans. Medical Imaging6
2020 Endo-Sim2Real: Consistency Learning-Based Domain Adaptation for Instrument Segmentation
Manish Sahu, Ronja Strömsdörfer, Anirban Mukhopadhyay 0003, Stefan Zachow
MICCAI (3)4
2019 A Surface-Theoretic Approach for Statistical Shape Modeling
Felix Ambellan, Stefan Zachow, Christoph von Tycowicz
MICCAI (4)2
2019 Generation and Visual Exploration of Medical Flow Data: Survey, Research Trends and Future Challenges
abstract
Abstract Simulations and measurements of blood and airflow inside the human circulatory and respiratory system play an increasingly important role in personalized medicine for prevention, diagnosis and treatment of diseases. This survey focuses on three main application areas. (1) Computational fluid dynamics (CFD) simulations of blood flow in cerebral aneurysms assist in predicting the outcome of this pathologic process and of therapeutic interventions. (2) CFD simulations of nasal airflow allow for investigating the effects of obstructions and deformities and provide therapy decision support. (3) 4D phase‐contrast (4D PC) magnetic resonance imaging of aortic haemodynamics supports the diagnosis of various vascular and valve pathologies as well as their treatment. An investigation of the complex and often dynamic simulation and measurement data requires the coupling of sophisticated visualization, interaction and data analysis techniques. In this paper, we survey the large body of work that has been conducted within this realm. We extend previous surveys by incorporating nasal airflow, addressing the joint investigation of blood flow and vessel wall properties and providing a more fine‐granular taxonomy of the existing techniques. From the survey, we extract major research trends and identify open problems and future challenges. The survey is intended for researchers interested in medical flow but also more general, in the combined visualization of physiology and anatomy, the extraction of features from flow field data and feature‐based visualization, the visual comparison of different simulation results and the interactive visual analysis of the flow field and derived characteristics.
Steffen Oeltze-Jafra, Monique Meuschke, Mathias Neugebauer, Sylvia Saalfeld, Kai Lawonn, Gábor Janiga, Hans-Christian Hege, Stefan Zachow, Bernhard Preim
Comput. Graph. Forum8
2019 Automated segmentation of knee bone and cartilage combining statistical shape knowledge and convolutional neural networks: Data from the Osteoarthritis Initiative
Felix Ambellan, Alexander Tack, Moritz Ehlke, Stefan Zachow
Medical Image Anal.4
2018 Spotting the Details: The Various Facets of Facial Expressions
abstract
3D Morphable Models (MM) are a popular tool for analysis and synthesis of facial expressions. They represent plausible variations in facial shape and appearance within a low-dimensional parameter space. Fitted to a face scan, the model's parameters compactly encode its expression patterns. This expression code can be used, for instance, as a feature in automatic facial expression recognition. For accurate classification, an MM that can adequately represent the various characteristic facets and variants of each expression is necessary. Currently available MMs are limited in the diversity of expression patterns. We present a novel high-quality 3D Facial Expression Morphable Model built from a large-scale face database as a tool for expression analysis and synthesis. Establishment of accurate dense correspondence, up to finest skin features, enables a detailed statistical analysis of facial expressions. Various characteristic shape patterns are identified for each expression. The results of our analysis give rise to a new facial expression code. We demonstrate the advantages of such a code for the automatic recognition of expressions, and compare the accuracy of our classifier to state-of-the-art.
Carl Martin Grewe, Gabriel Le Roux, Sven-Kristofer Pilz, Stefan Zachow
FG4
2018 An efficient Riemannian statistical shape model using differential coordinates: With application to the classification of data from the Osteoarthritis Initiative
Christoph von Tycowicz, Felix Ambellan, Anirban Mukhopadhyay 0003, Stefan Zachow
Medical Image Anal.4
2017 Shape-aware surface reconstruction from sparse 3D point-clouds
Florian Bernard 0001, Luis Salamanca, Johan Thunberg, Alexander Tack, Dennis Jentsch, Hans Lamecker, Stefan Zachow, Frank Hertel, Jorge M. Gonçalves, Peter Gemmar
Medical Image Anal.7
2013 Omnidirectional displacements for deformable surfaces
Dagmar Kainmüller, Hans Lamecker, Markus Heller, Britta Weber, Hans-Christian Hege, Stefan Zachow
Medical Image Anal.6
2013 Fast Generation of Virtual X-ray Images for Reconstruction of 3D Anatomy
abstract
We propose a novel GPU-based approach to render virtual X-ray projections of deformable tetrahedral meshes. These meshes represent the shape and the internal density distribution of a particular anatomical structure and are derived from statistical shape and intensity models (SSIMs). We apply our method to improve the geometric reconstruction of 3D anatomy (e.g. pelvic bone) from 2D X-ray images. For that purpose, shape and density of a tetrahedral mesh are varied and virtual X-ray projections are generated within an optimization process until the similarity between the computed virtual X-ray and the respective anatomy depicted in a given clinical X-ray is maximized. The OpenGL implementation presented in this work deforms and projects tetrahedral meshes of high resolution (200.000+ tetrahedra) at interactive rates. It generates virtual X-rays that accurately depict the density distribution of an anatomy of interest. Compared to existing methods that accumulate X-ray attenuation in deformable meshes, our novel approach significantly boosts the deformation/projection performance. The proposed projection algorithm scales better with respect to mesh resolution and complexity of the density distribution, and the combined deformation and projection on the GPU scales better with respect to the number of deformation parameters. The gain in performance allows for a larger number of cycles in the optimization process. Consequently, it reduces the risk of being stuck in a local optimum. We believe that our approach will improve treatments in orthopedics, where 3D anatomical information is essential.
Moritz Ehlke, Heiko Ramm, Hans Lamecker, Hans-Christian Hege, Stefan Zachow
IEEE Trans. Vis. Comput. Graph.5
2012 Automatic Detection and Classification of Teeth in CT Data
Nguyen The Duy, Hans Lamecker, Dagmar Kainmüller, Stefan Zachow
MICCAI (1)4
2010 Improving Deformable Surface Meshes through Omni-Directional Displacements and MRFs
Dagmar Kainmüller, Hans Lamecker, Heiko Seim, Stefan Zachow, Hans-Christian Hege
MICCAI (1)4
2009 Automatic Extraction of Mandibular Nerve and Bone from Cone-Beam CT Data
Dagmar Kainmüller, Hans Lamecker, Heiko Seim, Max Zinser, Stefan Zachow
MICCAI (1)5
2009 Visual Exploration of Nasal Airflow
abstract
Rhinologists are often faced with the challenge of assessing nasal breathing from a functional point of view to derive effective therapeutic interventions. While the complex nasal anatomy can be revealed by visual inspection and medical imaging, only vague information is available regarding the nasal airflow itself: Rhinomanometry delivers rather unspecific integral information on the pressure gradient as well as on total flow and nasal flow resistance. In this article we demonstrate how the understanding of physiological nasal breathing can be improved by simulating and visually analyzing nasal airflow, based on an anatomically correct model of the upper human respiratory tract. In particular we demonstrate how various Information Visualization (InfoVis) techniques, such as a highly scalable implementation of parallel coordinates, time series visualizations, as well as unstructured grid multi-volume rendering, all integrated within a multiple linked views framework, can be utilized to gain a deeper understanding of nasal breathing. Evaluation is accomplished by visual exploration of spatio-temporal airflow characteristics that include not only information on flow features but also on accompanying quantities such as temperature and humidity. To our knowledge, this is the first in-depth visual exploration of the physiological function of the nose over several simulated breathing cycles under consideration of a complete model of the nasal airways, realistic boundary conditions, and all physically relevant time-varying quantities.
Stefan Zachow, Philipp Muigg, Thomas Hildebrandt, Helmut Doleisch, Hans-Christian Hege
IEEE Trans. Vis. Comput. Graph.1
2001 Improved 3D Osteotomy Planning in Cranio-maxillofacial Surgery
Stefan Zachow, Evgeny Gladilin, Hans-Florian Zeilhofer, Robert Sader
MICCAI1