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Constantin Bogdan Ciambur

dblp:425/3692 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2024
0000-0001-7387-1366ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 5 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › structural bioinformatics › ligand binding site analysis
binding pocket prediction
0.812024
Protein interaction explorer (PIE): a comprehensive platform for navigating protein-protein interactions and ligand binding pockets · Bioinform. 2024
Bioinformatics and computational biology
drug discovery
0.812024
Protein interaction explorer (PIE): a comprehensive platform for navigating protein-protein interactions and ligand binding pockets · Bioinform. 2024
Bioinformatics and computational biology › protein analysis › protein-protein interaction
protein-protein interaction analysis
0.812024
Protein interaction explorer (PIE): a comprehensive platform for navigating protein-protein interactions and ligand binding pockets · Bioinform. 2024
Bioinformatics and computational biology
structural bioinformatics
0.812024
Protein interaction explorer (PIE): a comprehensive platform for navigating protein-protein interactions and ligand binding pockets · Bioinform. 2024
Bioinformatics and computational biology
protein structure analysis
0.212024
Protein interaction explorer (PIE): a comprehensive platform for navigating protein-protein interactions and ligand binding pockets · Bioinform. 2024
YearPublicationVenuePosition
2024 Protein interaction explorer (PIE): a comprehensive platform for navigating protein-protein interactions and ligand binding pockets
abstract
SUMMARY: Protein Interaction Explorer (PIE) is a new web-based tool integrated to our database iPPI-DB, specifically crafted to support structure-based drug discovery initiatives focused on protein-protein interactions (PPIs). Drawing upon extensive structural data encompassing thousands of heterodimer complexes, including those with successful ligands, PIE provides a comprehensive suite of tools dedicated to aid decision-making in PPI drug discovery. PIE enables researchers/bioinformaticians to identify and characterize crucial factors such as the presence of binding pockets or functional binding sites at the interface, predicting hot spots, and foreseeing similar protein-embedded pockets for potential repurposing efforts. AVAILABILITY AND IMPLEMENTATION: PIE is user-friendly and readily accessible at https://ippidb.pasteur.fr/targetcentric/. It relies on the NGL visualizer.
Fabien Mareuil, Alexandra Moine-Franel, Anuradha Kar, Michael Nilges, Constantin Bogdan Ciambur, Olivier Sperandio
Bioinform.5