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Adrian Weich

dblp:428/3219 · DBLP profile ↗
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1ranked-venue papers
1as first author
1since 2021 · last 2026
0000-0002-2803-2034ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis › sequencing data analysis
coverage estimation
1.012026
esloco: simulation-based estimation of local coverage in long-read DNA sequencing · Bioinform. 2026
Bioinformatics and computational biology
genomics
1.012026
esloco: simulation-based estimation of local coverage in long-read DNA sequencing · Bioinform. 2026
Bioinformatics and computational biology › genomics
sequencing
1.012026
esloco: simulation-based estimation of local coverage in long-read DNA sequencing · Bioinform. 2026
Bioinformatics and computational biology
sequencing simulation
0.312026
esloco: simulation-based estimation of local coverage in long-read DNA sequencing · Bioinform. 2026

Methods — techniques the papers use, named apart from their topics

monte carlo simulation · 1.0
YearPublicationVenuePosition
2026 esloco: simulation-based estimation of local coverage in long-read DNA sequencing
abstract
SUMMARY: Long-read DNA sequencing is increasingly applied for whole-genome studies, yet experimental planning often lacks reliable estimates of target region coverage, leading to costly and time-consuming pilot studies and replicates. We present esloco, a Monte Carlo-based simulation framework for estimating local coverage in long-read sequencing experiments, including scenarios with unknown target regions (e.g. viral integration, CRISPR-Cas9) or PCR-free designs (e.g. base modifications). By modeling coverage as a function of sequencing depth and read length distribution, esloco enables informed predictions of local sequencing outcomes. Benchmarking across a 45-gene panel demonstrated close agreement with empirical data, underscoring the framework's reliability. AVAILABILITY AND IMPLEMENTATION: esloco is a Python package available on PyPI (https://pypi.org/project/esloco/), GitHub (https://github.com/aweich/esloco), and Zenodo (https://doi.org/10.5281/zenodo.17776161).
Adrian Weich, Christopher Lischer, Julio Vera
Bioinform.1