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Tobias Rydén

dblp:43/442 · DBLP profile ↗
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8ranked-venue papers
2as first author
0since 2021 · last 2015
0000-0001-7375-2105ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Systems, architecture and hardware · 2Computer networks · 2 · 2 first-authorApplied, interdisciplinary, general and emerging computing · 2Graphics, computer vision, multimedia, augmented reality and games · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%
Computer architecture, parallel and distributed computing, and storage systems
1 paper
Performance modeling and evaluation · 100%

Topics — the 8 heaviest of 8, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › cancer genomics › copy number analysis
array CGH segmentation
0.112007
Continuous-index hidden Markov modelling of array CGH copy number data · Bioinform. 2007
Bioinformatics and computational biology › cancer genomics
copy number analysis
0.112007
Continuous-index hidden Markov modelling of array CGH copy number data · Bioinform. 2007
Bioinformatics and computational biology › genomics
genomic data analysis
0.112007
Continuous-index hidden Markov modelling of array CGH copy number data · Bioinform. 2007
Bioinformatics and computational biology › proteomics
mass spectrometry data analysis
0.112007
Regression analysis and modelling of data acquisition for SELDI-TOF mass spectrometry · Bioinform. 2007
Performance modeling and evaluation › queueing models › queueing discipline
bulk-service queue
0.011993
Waiting time distributions in buffers with batch service · IEEE Trans. Commun. 1993
Performance modeling and evaluation
queueing models
0.011993
Waiting time distributions in buffers with batch service · IEEE Trans. Commun. 1993
Performance modeling and evaluation › queueing analysis
waiting time distribution
0.011993
Waiting time distributions in buffers with batch service · IEEE Trans. Commun. 1993
Performance modeling and evaluation › queueing models › buffer analysis
buffer utilization
0.011993
Waiting time distributions in buffers with batch service · IEEE Trans. Commun. 1993

Methods — techniques the papers use, named apart from their topics

robust statistics · 0.1hidden markov model · 0.1heteroscedastic linear regression · 0.1Monte Carlo EM algorithm · 0.1EM algorithm · 0.1queueing theory · 0.0poisson arrival process · 0.0
YearPublicationVenuePosition
2015 Load transients in pooled cellular core network nodes
Åke Arvidsson, Tobias Rydén
Perform. Evaluation2
2007 Mobile Positioning in MIMO System Using Particle Filtering
abstract
This paper represents the results of a simulation study on positioning of a mobile unit in MIMO settings. We used two different approaches for modeling the mobile movement, combined with a simple geometrical model for the MIMO channel. Three different particle filters were implemented for the position estimation. The results show that all three filters are able to achieve estimation accuracy required by Federal Communication Commission. The dimensionality of the particle filter state space is independent of the number of antenna elements, and it is possible to increase the number of antennas and use more sophisticated channel models without changing the filtering algorithms.
Svetlana Bizjajeva, Tobias Rydén, Ove Edfors
VTC Fall2
2007 Regression analysis and modelling of data acquisition for SELDI-TOF mass spectrometry
abstract
MOTIVATION: Pre-processing of SELDI-TOF mass spectrometry data is currently performed on a largel y ad hoc basis. This makes comparison of results from independent analyses troublesome and does not provide a framework for distinguishing different sources of variation in data. RESULTS: In this article, we consider the task of pooling a large number of single-shot spectra, a task commonly performed automatically by the instrument software. By viewing the underlying statistical problem as one of heteroscedastic linear regression, we provide a framework for introducing robust methods and for dealing with missing data resulting from a limited span of recordable intensity values provided by the instrument. Our framework provides an interpretation of currently used methods as a maximum-likelihood estimator and allows theoretical derivation of its variance. We observe that this variance depends crucially on the total number of ionic species, which can vary considerably between different pooled spectra. This variation in variance can potentially invalidate the results from naive methods of discrimination/classification and we outline appropriate data transformations. Introducing methods from robust statistics did not improve the standard errors of the pooled samples. Imputing missing values however-using the EM algorithm-had a notable effect on the result; for our data, the pooled height of peaks which were frequently truncated increased by up to 30%.
Martin Sköld, Tobias Rydén, Viktoria Samuelsson, Charlotte Welinder, Lars Ekblad, Håkan Olsson, Bo Baldetorp
Bioinform.2
2007 Continuous-index hidden Markov modelling of array CGH copy number data
abstract
MOTIVATION: In recent years, a range of techniques for analysis and segmentation of array comparative genomic hybridization (aCGH) data have been proposed. For array designs in which clones are of unequal lengths, are unevenly spaced or overlap, the discrete-index view typically adopted by such methods may be questionable or improved. RESULTS: We describe a continuous-index hidden Markov model for aCGH data as well as a Monte Carlo EM algorithm to estimate its parameters. It is shown that for a dataset from the BT-474 cell line analysed on 32K BAC tiling microarrays, this model yields considerably better model fit in terms of lag-1 residual autocorrelations compared to a discrete-index HMM, and it is also shown how to use the model for e.g. estimation of change points on the base-pair scale and for estimation of conditional state probabilities across the genome. In addition, the model is applied to the Glioblastoma Multiforme data used in the comparative study by Lai et al. (Lai,W.R. et al. (2005) Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. Bioinformatics, 21, 3763-3370.) giving result similar to theirs but with certain features highlighted in the continuous-index setting.
Susann Stjernqvist, Tobias Rydén, Martin Sköld, Johan Staaf
Bioinform.2
2003 Local dependencies and Poissonification: a case study
Sofia Andersson, Tobias Rydén
Perform. Evaluation2
1998 A new maximum likelihood gradient algorithm for on-line hidden Markov model identification
abstract
This paper presents a new algorithm for on-line identification of hidden Markov model (HMM) parameters. The scheme is gradient based, and provides parameter estimates which recursively maximise the likelihood function. It is therefore a recursive maximum likelihood (RML) algorithm, and it has optimal asymptotic properties. The only current on-line HMM identification algorithm with anything other than suboptimal rate of convergence is based on a prediction error (PE) cost function. As well as presenting a new algorithm, this paper also highlights and explains a counter-intuitive convergence problem for the current recursive PE (RPE) algorithm, when operating in low noise conditions. Importantly, this problem does not exist for the new RML algorithm. Simulation studies demonstrate the superior performance of the new algorithm. compared to current techniques.
Iain B. Collings, Tobias Rydén
ICASSP2
1998 Optimal Overload Control of Systems with Access Buffers - a Difficult Problem
Tobias Rydén
Comput. Networks1
1993 Waiting time distributions in buffers with batch service
abstract
A buffer where customers arrive according to a Poissonian stream and are removed in batches at equidistant points of time is considered. The waiting time distribution for this system is derived under two different queuing disciplines: first in, first-out (FIFO) and last-in, first-out (LIFO). The buffer space may be finite or infinite. Applications of this type of buffer include, for example, time-division multiple-access (TDMA) systems. The results indicate that, in some cases, LIFO might be a better discipline than FIFO.>
Tobias Rydén
IEEE Trans. Commun.1