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V. V. Shamin

dblp:48/3152 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 1994
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 1 heaviest of 1, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › RNA biology › RNA processing
polyadenylation site prediction
0.011994
Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites · Comput. Appl. Biosci. 1994

Methods — techniques the papers use, named apart from their topics

multiplicative scoring · 0.0consensus matrix · 0.0
YearPublicationVenuePosition
1994 Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites
abstract
Using a set of sequences of 63 cleavage/polyadenylation sites of vertebrate pre-mRNA, a generalized consensus matrix was constructed. The elements of the matrix were the absolute frequencies of oligonucleotides of length l at the ith position of sites. The cleavage point of each site was assigned the same position number. To recognize a polyadenylation site in a nucleotide sequence, a multiplicative measure was obtained using the elements of the generalized consensus matrix as weight factors. For any omega-long fragment of a nucleotide sequence, the estimated value of the functional mu was compared with the threshold value mu*. Based on the results obtained, we determined whether or not the given fragment is a processing site.
Yury V. Kondrakhin, V. V. Shamin, Nikolay A. Kolchanov
Comput. Appl. Biosci.2