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Qicheng Ma

dblp:52/3327 · DBLP profile ↗
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5ranked-venue papers
3as first author
0since 2021 · last 2020
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Databases, data management, data science and information retrieval · 2Artificial intelligence and machine learning · 1Security and privacy · 1 · 1 first-authorHuman-computer interaction and ubiquitous computing · 1 · 1 first-authorApplied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Databases, data mining, and information retrieval
1 paper
Information retrieval · 50% Data integration and cleaning · 50%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
protein sequence analysis
0.012000
Application of neural networks to biological data mining: a case study in protein sequence classification · KDD 2000
Bioinformatics and computational biology › protein function prediction › protein classification
protein sequence classification
0.012000
Application of neural networks to biological data mining: a case study in protein sequence classification · KDD 2000
Data integration and cleaning
approximate matching
0.012000
An Approximate Search Engine for Structural Databases · SIGMOD Conference 2000
Bioinformatics and computational biology › protein sequence analysis
protein feature extraction
0.012000
Application of neural networks to biological data mining: a case study in protein sequence classification · KDD 2000

Methods — techniques the papers use, named apart from their topics

sequence alignment · 0.0bayesian neural network · 0.0
YearPublicationVenuePosition
2020 DANTE: Predicting Insider Threat using LSTM on system logs
abstract
Insider threat is one of the most pernicious threat vectors to information and communication technologies (ICT) across the world due to the elevated level of trust and access that an insider is afforded. This type of threat can stem from both malicious users with a motive as well as negligent users who inadvertently reveal details about trade secrets, company information, or even access information to malignant players. In this paper, we propose a novel approach that uses system logs to detect insider behavior using a special recurrent neural network (RNN) model. Ground truth is established using DANTE and used as baseline for identifying anomalous behavior. For this, system logs are modeled as a natural language sequence and patterns are extracted from these sequences. We create workflows of sequences of actions that follow a natural language logic and control flow. These flows are assigned various categories of behaviors - malignant or benign. Any deviation from these sequences indicates the presence of a threat. We further classify threats into one of the five categories provided in the CERT insider threat dataset. Through experimental evaluation, we show that the proposed model can achieve 93% prediction accuracy.
Qicheng Ma, Nidhi Rastogi
TrustCom1
2005 Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural networks
abstract
BACKGROUND: The sequencing of the human genome has enabled us to access a comprehensive list of genes (both experimental and predicted) for further analysis. While a majority of the approximately 30,000 known and predicted human coding genes are characterized and have been assigned at least one function, there remains a fair number of genes (about 12,000) for which no annotation has been made. The recent sequencing of other genomes has provided us with a huge amount of auxiliary sequence data which could help in the characterization of the human genes. Clustering these sequences into families is one of the first steps to perform comparative studies across several genomes. RESULTS: Here we report a novel clustering algorithm (CLUGEN) that has been used to cluster sequences of experimentally verified and predicted proteins from all sequenced genomes using a novel distance metric which is a neural network score between a pair of protein sequences. This distance metric is based on the pairwise sequence similarity score and the similarity between their domain structures. The distance metric is the probability that a pair of protein sequences are of the same Interpro family/domain, which facilitates the modelling of transitive homology closure to detect remote homologues. The hierarchical average clustering method is applied with the new distance metric. CONCLUSION: Benchmarking studies of our algorithm versus those reported in the literature shows that our algorithm provides clustering results with lower false positive and false negative rates. The clustering algorithm is applied to cluster several eukaryotic genomes and several dozens of prokaryotic genomes.
Qicheng Ma, Gung-Wei Chirn, Richard Cai, Joseph D. Szustakowski, N. R. Nirmala
BMC Bioinform.1
2001 DNA sequence classification via an expectation maximization algorithm and neural networks: a case study
abstract
Presents new techniques for biosequence classification, with a focus on recognizing E. Coli promoters in DNA. Specifically, given an unlabeled DNA sequence S, we want to determine whether or not S is an E. Coli promoter. We use an expectation maximization (EM) algorithm to locate the -35 and -10 binding sites in an E. Coli promoter sequence. The EM algorithm differs from previously published EM algorithms in that, instead of assuming a uniform distribution for the lengths of the spacer between the -35 binding site and the -10 binding site as well as between the -10 binding site and the transcriptional start site, our algorithm deduces the probability distribution for these lengths. Based on the located binding sites, we select features in each E. Coli promoter sequence according to their information contents and represent the features using an orthogonal encoding method. We then feed the features to a neural network for promoter recognition. Empirical studies show that the proposed approach achieves good performance on different data sets.
Qicheng Ma, Jason Tsong-Li Wang, Dennis E. Shasha, Cathy H. Wu
IEEE Trans. Syst. Man Cybern. Part C1
2000 Application of neural networks to biological data mining: a case study in protein sequence classification
abstract
Biological data mining aims to extract signi cant information from DNA, RNA and proteins.The signi cant information may refer to motifs, functional sites, clustering and classi cation rules.This paper presents an example of biological data mining: the classi cation of protein sequences using neural netw orks.We proposenew tec hniques to extract features from protein data and use them in combination with the Ba yesianneural network to classify protein sequences obtained from the PIR protein database maintained at the National Biomedical Research F oundation.T o evaluate the performance of the proposed approach, we c o mpare it with other protein classi ers built based on sequence alignment and machine learning methods.Experimental results sho w the high precision of the proposed classi er and the complementarity of the tools studied in the paper.
Jason Tsong-Li Wang, Qicheng Ma, Dennis E. Shasha, Cathy H. Wu
KDD2
2000 An Approximate Search Engine for Structural Databases
Jason Tsong-Li Wang, Dennis E. Shasha, Bruce A. Shapiro, Kaizhong Zhang, Xinhuan Zheng, Qicheng Ma, Zasha Weinberg
SIGMOD Conference7