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Andrew Whitwham

dblp:52/8322 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2010
0000-0001-8117-400XORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis › sequence assembly
assembly editing		 0.112010
Gap5 - editing the billion fragment sequence assembly · Bioinform. 2010
Bioinformatics and computational biology › sequence analysis
sequence assembly		 0.112010
Gap5 - editing the billion fragment sequence assembly · Bioinform. 2010
YearPublicationVenuePosition
2010 Gap5 - editing the billion fragment sequence assembly
abstract
MOTIVATION: Existing sequence assembly editors struggle with the volumes of data now readily available from the latest generation of DNA sequencing instruments. RESULTS: We describe the Gap5 software along with the data structures and algorithms used that allow it to be scalable. We demonstrate this with an assembly of 1.1 billion sequence fragments and compare the performance with several other programs. We analyse the memory, CPU, I/O usage and file sizes used by Gap5. AVAILABILITY AND IMPLEMENTATION: Gap5 is part of the Staden Package and is available under an Open Source licence from http://staden.sourceforge.net. It is implemented in C and Tcl/Tk. Currently it works on Unix systems only.
James K. Bonfield, Andrew Whitwham
 Bioinform.2