Multi-contrast magnetic resonance imaging (MRI) super-resolution intends to reconstruct high-resolution (HR) images from low-resolution (LR) scans by leveraging structural information present in HR reference images acquired with different contrasts. This technique enhances anatomical detail and soft tissue differentiation, which is vital for early diagnosis and clinical decision-making. However, inherent contrasts disparities between modalities pose fundamental challenges in effectively utilizing reference image textures to guide target image reconstruction, often resulting in suboptimal feature integration. To address this issue, we propose a dual-prompt expert network based on a convolutional dictionary feature decoupling (CD-DPE) strategy for multi-contrast MRI super-resolution. Specifically, we introduce an iterative convolutional dictionary feature decoupling module (CD-FDM) to separate features into cross-contrast and intra-contrast components, thereby reducing redundancy and interference. To fully integrate these features, a novel dual-prompt feature fusion expert module (DP-FFEM) is proposed. This module uses a frequency prompt to guide the selection of relevant reference features for incorporation into the target image, while an adaptive routing prompt determines the optimal method for fusing reference and target features to enhance reconstruction quality. Extensive experiments on public multi-contrast MRI datasets demonstrate that CD-DPE outperforms state-of-the-art methods in reconstructing fine details. Additionally, experiments on unseen datasets demonstrated that CD-DPE exhibits strong generalization capabilities.

Riboswitches are naturally occurring RNA elements that control bacterial gene expression by binding to specific small molecules. They serve as important models for RNA-small molecule recognition and have also become a novel class of targets for developing antibiotics. Here, we carried out conventional and enhanced-sampling molecular dynamics (MD) simulations, totaling 153.5 μs, to characterize the determinants of binding free energies and unbinding paths for the cognate and synthetic ligands of a PreQ1 riboswitch. Binding free energy analysis showed that two triplets of nucleotides, U6-C15-A29 and G5-G11-C16, contribute the most to the binding of the cognate ligands, by hydrogen bonding and by base stacking, respectively. Mg2+ ions are essential in stabilizing the binding pocket. For the synthetic ligands, the hydrogen-bonding contributions of the U6-C15-A29 triplet are significantly compromised, and the bound state resembles the apo state in several respects, including the disengagement of the C15-A14-A13 and A32-G33 base stacks. The bulkier synthetic ligands lead to significantly loosening of the binding pocket, including extrusion of the C15 nucleobase and a widening of the C15-C30 groove. Enhanced-sampling simulations further revealed that the cognate and synthetic ligands unbind in almost opposite directions. Our work offers new insight for designing riboswitch ligands.