Mark G. Weiner

dblp:55/1478 · DBLP profile ↗
← Back
33ranked-venue papers
12as first author
14since 2021 · last 2026
0000-0001-5586-9940ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 32 · 12 first-author · 13 since 2021Artificial intelligence and machine learning · 1 · 1 since 2021
YearPublicationVenuePosition
2026 Opportunities for informatics to improve patient experiences: observations and reflections of ACMI fellows
abstract
OBJECTIVES: We report on findings from a meeting convened by the American College of Medical Informatics (ACMI) to characterize aspects of the patient experience that could be improved using informatics. MATERIALS AND METHODS: The American College of Medical Informatics fellows were invited to share their experiences as patients and suggest informatics approaches that may improve the patient experience. RESULTS: We identified 4 themes: (1) getting the right care, (2) data sharing and data interoperability, (3) guiding low-cost evaluations, and (4) predictive analytics. DISCUSSION: Despite widespread adoption of health IT, patient experiences remain far from optimal. CONCLUSION: The American College of Medical Informatics fellows identified informatics approaches, applications, and research areas that have the potential to improve patient experiences with health care systems.
Howard R. Strasberg, Edward P. Hoffer, Ross Koppel, Kevin B. Johnson, William M. Tierney, Geoffrey W. Rutledge, Elmer V. Bernstam, Jos Aarts, Marion J. Ball, Douglas S. Bell, Bernd Blobel, Suzanne Boren, Iain E. Buchan, James J. Cimino, Lawrence M. Fagan, James Geller, María Adela Grando, David A. Hanauer, William R. Hogan, Andrew S. Kanter, Bonnie Kaplan, Casimir A. Kulikowski, Albert Lai, David McCallie, Vimla Patel, Wanda Pratt, Sarah Collins Rossetti, Edward H. Shortliffe, Hardeep Singh 0005, Dean F. Sittig, William W. Stead, Kim M. Unertl, Mark G. Weiner, Kai Zheng 0002
J. Am. Medical Informatics Assoc.33
2025 Towards responsible artificial intelligence in healthcare - getting real about real-world data and evidence
abstract
BACKGROUND: The use of real-world data (RWD) in artificial intelligence (AI) applications for healthcare offers unique opportunities but also poses complex challenges related to interpretability, transparency, safety, efficacy, bias, equity, privacy, ethics, accountability, and stakeholder engagement. METHODS: A multi-stakeholder expert panel comprising healthcare professionals, AI developers, policymakers, and other stakeholders was assembled. Their task was to identify critical issues and formulate consensus recommendations, focusing on the responsible use of RWD in healthcare AI. The panel's work involved an in-person conference and workshop and extensive deliberations over several months. RESULTS: The panel's findings revealed several critical challenges, including the necessity for data literacy and documentation, the identification and mitigation of bias, privacy and ethics considerations, and the absence of an accountability structure for stakeholder management. To address these, the panel proposed a series of recommendations, such as the adoption of metadata standards for RWD sources, the development of transparency frameworks and instructional labels likened to "nutrition labels" for AI applications, the provision of cross-disciplinary training materials, the implementation of bias detection and mitigation strategies, and the establishment of ongoing monitoring and update processes. CONCLUSION: Guidelines and resources focused on the responsible use of RWD in healthcare AI are essential for developing safe, effective, equitable, and trustworthy applications. The proposed recommendations provide a foundation for a comprehensive framework addressing the entire lifecycle of healthcare AI, emphasizing the importance of documentation, training, transparency, accountability, and multi-stakeholder engagement.
Eileen Koski, Amar K. Das, Pei-Yun Sabrina Hsueh, Tony Solomonides, Amanda L. Joseph, Gyana Srivastava, Carl Erwin Johnson, Joseph L. Kannry, Bilikis Oladimeji, Amy Price, Steven E. Labkoff, Gnana Bharathy, Baihan Lin, Douglas B. Fridsma, Lee A. Fleisher, Mónica López-González, Reva Singh, Mark G. Weiner, Robert Stolper, Russell Baris, Suzanne Sincavage, Tristan Naumann, Tayler Williams, Tien Thi Thuy Bui, Yuri Quintana
J. Am. Medical Informatics Assoc.18
2024 Domain generalization for enhanced predictions of hospital readmission on unseen domains among patients with diabetes
Ameen Abdel Hai, Mark G. Weiner, Alice Livshits, Jeremiah R. Brown, Anuradha Paranjape, Wenke Hwang, H. Lester Kirchner, Nestoras Mathioudakis, Esra Karslioglu French, Zoran Obradovic, Daniel J. Rubin
Artif. Intell. Medicine2
2024 Toward a responsible future: recommendations for AI-enabled clinical decision support
abstract
BACKGROUND: Integrating artificial intelligence (AI) in healthcare settings has the potential to benefit clinical decision-making. Addressing challenges such as ensuring trustworthiness, mitigating bias, and maintaining safety is paramount. The lack of established methodologies for pre- and post-deployment evaluation of AI tools regarding crucial attributes such as transparency, performance monitoring, and adverse event reporting makes this situation challenging. OBJECTIVES: This paper aims to make practical suggestions for creating methods, rules, and guidelines to ensure that the development, testing, supervision, and use of AI in clinical decision support (CDS) systems are done well and safely for patients. MATERIALS AND METHODS: In May 2023, the Division of Clinical Informatics at Beth Israel Deaconess Medical Center and the American Medical Informatics Association co-sponsored a working group on AI in healthcare. In August 2023, there were 4 webinars on AI topics and a 2-day workshop in September 2023 for consensus-building. The event included over 200 industry stakeholders, including clinicians, software developers, academics, ethicists, attorneys, government policy experts, scientists, and patients. The goal was to identify challenges associated with the trusted use of AI-enabled CDS in medical practice. Key issues were identified, and solutions were proposed through qualitative analysis and a 4-month iterative consensus process. RESULTS: Our work culminated in several key recommendations: (1) building safe and trustworthy systems; (2) developing validation, verification, and certification processes for AI-CDS systems; (3) providing a means of safety monitoring and reporting at the national level; and (4) ensuring that appropriate documentation and end-user training are provided. DISCUSSION: AI-enabled Clinical Decision Support (AI-CDS) systems promise to revolutionize healthcare decision-making, necessitating a comprehensive framework for their development, implementation, and regulation that emphasizes trustworthiness, transparency, and safety. This framework encompasses various aspects including model training, explainability, validation, certification, monitoring, and continuous evaluation, while also addressing challenges such as data privacy, fairness, and the need for regulatory oversight to ensure responsible integration of AI into clinical workflow. CONCLUSIONS: Achieving responsible AI-CDS systems requires a collective effort from many healthcare stakeholders. This involves implementing robust safety, monitoring, and transparency measures while fostering innovation. Future steps include testing and piloting proposed trust mechanisms, such as safety reporting protocols, and establishing best practice guidelines.
Steven E. Labkoff, Bilikis Oladimeji, Joseph L. Kannry, Tony Solomonides, Russell Leftwich, Eileen Koski, Amanda L. Joseph, Mónica López-González, Lee A. Fleisher, Kimberly Nolen, Sayon Dutta, Deborah R. Levy, Amy Price, Paul J. Barr, Jonathan D. Hron, Baihan Lin, Gyana Srivastava, Nuria Pastor, Unai Sánchez Luque, Tien Thi Thuy Bui, Reva Singh, Tayler Williams, Mark G. Weiner, Tristan Naumann, Dean F. Sittig, Gretchen Purcell Jackson, Yuri Quintana
J. Am. Medical Informatics Assoc.23
2023 Spatial Knowledge Transfer with Deep Adaptation Network for Predicting Hospital Readmission
Ameen Abdel Hai, Mark G. Weiner, Alice Livshits, Jeremiah R. Brown, Anuradha Paranjape, Zoran Obradovic, Daniel J. Rubin
AIME2
2023 A method to automate the discharge summary hospital course for neurology patients
abstract
OBJECTIVE: Generation of automated clinical notes has been posited as a strategy to mitigate physician burnout. In particular, an automated narrative summary of a patient's hospital stay could supplement the hospital course section of the discharge summary that inpatient physicians document in electronic health record (EHR) systems. In the current study, we developed and evaluated an automated method for summarizing the hospital course section using encoder-decoder sequence-to-sequence transformer models. MATERIALS AND METHODS: We fine-tuned BERT and BART models and optimized for factuality through constraining beam search, which we trained and tested using EHR data from patients admitted to the neurology unit of an academic medical center. RESULTS: The approach demonstrated good ROUGE scores with an R-2 of 13.76. In a blind evaluation, 2 board-certified physicians rated 62% of the automated summaries as meeting the standard of care, which suggests the method may be useful clinically. DISCUSSION AND CONCLUSION: To our knowledge, this study is among the first to demonstrate an automated method for generating a discharge summary hospital course that approaches a quality level of what a physician would write.
Vince C. Hartman, Sanika S. Bapat, Mark G. Weiner, Babak B. Navi, Evan Sholle, Thomas R. Campion Jr.
J. Am. Medical Informatics Assoc.3
2023 Assessing the impact of privacy-preserving record linkage on record overlap and patient demographic and clinical characteristics in PCORnet®, the National Patient-Centered Clinical Research Network
abstract
OBJECTIVE: This article describes the implementation of a privacy-preserving record linkage (PPRL) solution across PCORnet®, the National Patient-Centered Clinical Research Network. MATERIAL AND METHODS: Using a PPRL solution from Datavant, we quantified the degree of patient overlap across the network and report a de-duplicated analysis of the demographic and clinical characteristics of the PCORnet population. RESULTS: There were ∼170M patient records across the responding Network Partners, with ∼138M (81%) of those corresponding to a unique patient. 82.1% of patients were found in a single partner and 14.7% were in 2. The percentage overlap between Partners ranged between 0% and 80% with a median of 0%. Linking patients' electronic health records with claims increased disease prevalence in every clinical characteristic, ranging between 63% and 173%. DISCUSSION: The overlap between Partners was variable and depended on timeframe. However, patient data linkage changed the prevalence profile of the PCORnet patient population. CONCLUSIONS: This project was one of the largest linkage efforts of its kind and demonstrates the potential value of record linkage. Linkage between Partners may be most useful in cases where there is geographic proximity between Partners, an expectation that potential linkage Partners will be able to fill gaps in data, or a longer study timeframe.
Keith Marsolo, Daniel Kiernan, Sengwee Toh, Jasmin Phua, Darcy Louzao, Kevin Haynes, Mark G. Weiner, Francisco Angulo, L. Charles Bailey, Jiang Bian 0001, Daniel Fort, Shaun J. Grannis, Ashok K. Krishnamurthy 0001, Vinit Nair, Pedro Rivera, Jonathan C. Silverstein, Maryan Zirkle, Thomas Carton
J. Am. Medical Informatics Assoc.7
2023 De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository
abstract
Machine learning (ML)-driven computable phenotypes are among the most challenging to share and reproduce. Despite this difficulty, the urgent public health considerations around Long COVID make it especially important to ensure the rigor and reproducibility of Long COVID phenotyping algorithms such that they can be made available to a broad audience of researchers. As part of the NIH Researching COVID to Enhance Recovery (RECOVER) Initiative, researchers with the National COVID Cohort Collaborative (N3C) devised and trained an ML-based phenotype to identify patients highly probable to have Long COVID. Supported by RECOVER, N3C and NIH's All of Us study partnered to reproduce the output of N3C's trained model in the All of Us data enclave, demonstrating model extensibility in multiple environments. This case study in ML-based phenotype reuse illustrates how open-source software best practices and cross-site collaboration can de-black-box phenotyping algorithms, prevent unnecessary rework, and promote open science in informatics.
Emily R. Pfaff, Andrew T. Girvin, Miles Crosskey, Srushti Gangireddy, Hiral Master, Wei-Qi Wei, Vern Eric Kerchberger, Mark G. Weiner, Paul A. Harris, Melissa A. Basford, Chris Lunt, Christopher G. Chute, Richard A. Moffitt, Melissa A. Haendel
J. Am. Medical Informatics Assoc.8
2022 Deep Learning vs Traditional Models for Predicting Hospital Readmission among Patients with Diabetes
Ameen Abdel Hai, Mark G. Weiner, Anuradha Paranjape, Alice Livshits, Jeremiah R. Brown, Zoran Obradovic, Daniel J. Rubin
AMIA2
2022 The Informatics of RECOVER: Understanding the Post Acute Sequelae of SARS-CoV-2 Infection
Mark G. Weiner, L. Charles Bailey, Richard R. Moffitt, Shawn N. Murphy
AMIA1
2021 Comparing Automated Extraction to Manual Chart Review for COVID-Specific Research Data Abstraction: A Case Study
Andrew L. Yin, Winston L. Guo, Evan Sholle, Mangala Rajan, Laura C. Pinheiro, Parag Goyal, Justin Choi, Mark N. Alshak, Graham T. Wehmeyer, Mark G. Weiner, Monika M. Safford, Thomas R. Campion Jr., Curtis L. Cole
AMIA11
2021 Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers
abstract
Our goal is to summarize the collective experience of 15 organizations in dealing with uncoordinated efforts that result in unnecessary delays in understanding, predicting, preparing for, containing, and mitigating the COVID-19 pandemic in the US. Response efforts involve the collection and analysis of data corresponding to healthcare organizations, public health departments, socioeconomic indicators, as well as additional signals collected directly from individuals and communities. We focused on electronic health record (EHR) data, since EHRs can be leveraged and scaled to improve clinical care, research, and to inform public health decision-making. We outline the current challenges in the data ecosystem and the technology infrastructure that are relevant to COVID-19, as witnessed in our 15 institutions. The infrastructure includes registries and clinical data networks to support population-level analyses. We propose a specific set of strategic next steps to increase interoperability, overall organization, and efficiencies.
Subha Madhavan, Lisa Bastarache, Jeffrey S. Brown, Atul J. Butte, David A. Dorr, Peter J. Embí, Charles P. Friedman, Kevin B. Johnson, Jason H. Moore, Isaac S. Kohane, Philip R. O. Payne, Jessica D. Tenenbaum, Mark G. Weiner, Adam B. Wilcox, Lucila Ohno-Machado
J. Am. Medical Informatics Assoc.13
2021 Extracting social determinants of health from electronic health records using natural language processing: a systematic review
abstract
OBJECTIVE: Social determinants of health (SDoH) are nonclinical dispositions that impact patient health risks and clinical outcomes. Leveraging SDoH in clinical decision-making can potentially improve diagnosis, treatment planning, and patient outcomes. Despite increased interest in capturing SDoH in electronic health records (EHRs), such information is typically locked in unstructured clinical notes. Natural language processing (NLP) is the key technology to extract SDoH information from clinical text and expand its utility in patient care and research. This article presents a systematic review of the state-of-the-art NLP approaches and tools that focus on identifying and extracting SDoH data from unstructured clinical text in EHRs. MATERIALS AND METHODS: A broad literature search was conducted in February 2021 using 3 scholarly databases (ACL Anthology, PubMed, and Scopus) following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. A total of 6402 publications were initially identified, and after applying the study inclusion criteria, 82 publications were selected for the final review. RESULTS: Smoking status (n = 27), substance use (n = 21), homelessness (n = 20), and alcohol use (n = 15) are the most frequently studied SDoH categories. Homelessness (n = 7) and other less-studied SDoH (eg, education, financial problems, social isolation and support, family problems) are mostly identified using rule-based approaches. In contrast, machine learning approaches are popular for identifying smoking status (n = 13), substance use (n = 9), and alcohol use (n = 9). CONCLUSION: NLP offers significant potential to extract SDoH data from narrative clinical notes, which in turn can aid in the development of screening tools, risk prediction models, and clinical decision support systems.
Braja Gopal Patra, Mohit Manoj Sharma, Veer Vekaria, Prakash Adekkanattu, Olga V. Patterson, Benjamin S. Glicksberg, Lauren A. Lepow, Euijung Ryu, Joanna M. Biernacka, Al'ona Furmanchuk, Thomas J. George, William R. Hogan, Yonghui Wu 0001, Xi Yang 0015, Jiang Bian 0001, Myrna Weissman, Priya Wickramaratne, J. John Mann, Mark Olfson, Thomas R. Campion Jr., Mark G. Weiner, Jyotishman Pathak
J. Am. Medical Informatics Assoc.21
2021 A predictive model of clinical deterioration among hospitalized COVID-19 patients by harnessing hospital course trajectories
Elizabeth Mauer, Jihui Lee, Justin Choi, Hongzhe Zhang, Katherine L. Hoffman, Imaani J. Easthausen, Mangala Rajan, Mark G. Weiner, Rainu Kaushal, Monika M. Safford, Peter A. D. Steel, Samprit Banerjee
J. Biomed. Informatics8
2018 Applying Predictive Analytics on Administrative and Perioperative Data to Assess Physician Decision Making and Post-Operative Testing for Acute Myocardial Infarction
Victor J. Lei, Mark D. Neuman, Mark G. Weiner, ThaiBinh Luong, Alex M. Bain, Daniel E. Polsky, Kevin G. Volpp, John H. Holmes, Amol S. Navathe
AMIA3
2018 Interactive Cost-benefit Analysis: Providing Real-World Financial Context to Predictive Analytics
Mark G. Weiner, Wasiq Sheikh, Harold P. Lehmann
AMIA1
2017 Collaborative Pharming
Mark G. Weiner, Jennifer Boehne, Terese Kornet, Ross Koppel
AMIA1
2016 Informatics to Transform Med Wreck to Medication Reconciliation
Mark G. Weiner, Charlene R. Weir, Terrence Adam, Edgar Y. Chou
AMIA1
2014 There is Nothing as Practical as a Good Theory: Building the PCORNet Clinical Data Research Network
Charles D. Borromeo, Bari Dzomba, Mark G. Weiner, Harold P. Lehmann
AMIA3
2013 Research Informatics : Re-engineering the Research Enterprise
Mark G. Weiner, Philip R. O. Payne, Peter J. Embí, Shawn N. Murphy
AMIA1
2012 An Electronic System for Managing a Radiation Oncology Quality Assurance Process Using REDCap
Peter Gabriel, Jarod Finlay, Mark G. Weiner
AMIA3
2012 HDD Terminology and Information Model Browsing Tools
Senthil K. Nachimuthu, Susan Matney, Mark G. Weiner, John H. Holmes, Stanley M. Huff, Lee Min Lau
AMIA3
2012 NETs Fishing in the Clinical Data Warehouse
Marie Synnestvedt, Mark G. Weiner, Bonnie Bennet, Hillary Faust
AMIA2
2012 An automated transition to ICD-10 encoding
Rob Wynden, Henry Grause, Ketty Mobed, Hari Krishna Rekapalli, Prakash Lakshminarayanan, Mark G. Weiner
AMIA6
2011 Detecting pregnancy use of non-hormonal category X medications in electronic medical records
abstract
OBJECTIVES: To determine whether a rule-based algorithm applied to an outpatient electronic medical record (EMR) can identify patients who are pregnant and prescribed medications proved to cause birth defects. DESIGN: A descriptive study using the University of Pennsylvania Health System outpatient EMR to simulate a prospective algorithm to identify exposures during pregnancy to category X medications, soon enough to intervene and potentially prevent the exposure. A subsequent post-hoc algorithm was also tested, working backwards from pregnancy endpoints, to search for possible exposures that should have been detected. MEASUREMENTS: Category X medications prescribed to pregnant patients. RESULTS: The alert simulation identified 2201 pregnancies with 16,969 pregnancy months (excluding abortions and ectopic pregnancies). Of these, 30 appeared to have an order for a non-hormone category X medication during pregnancy. However, none of the 30 'exposed pregnancies' were confirmed as true exposures in medical records review. The post-hoc algorithm identified 5841 pregnancies with 64 exposed pregnancies in 52,569 risk months, only one of which was a confirmed case. CONCLUSIONS: Category X medications may indeed be used in pregnancy, although rarely. However, most patients identified by the algorithm as exposed in pregnancy were not truly exposed. Therefore, implementing an electronic warning without evaluation would have inconvenienced prescribers, possibly hurting some patients (leading to non-use of needed drugs), with no benefit. These data demonstrate that computerized physician order entry interventions should be selected and evaluated carefully even before their use, using alert simulations such as that performed here, rather than just taken off the shelf and accepted as credible without formal evaluation.
Brian L. Strom, Rita Schinnar, Joshua Jones, Warren B. Bilker, Mark G. Weiner, Sean Hennessy, Charles E. Leonard, Peter F. Cronholm, Eric A. Pifer
J. Am. Medical Informatics Assoc.5
2006 Caregiving Burden Responses Differ for Internet and Telephone Data Collection
Mary Segal, Mark G. Weiner
AMIA2
2006 Assessing the accuracy of diagnostic codes in administrative databases: The impact of the sampling frame on sensitivity and specificity
Mark G. Weiner, Jennifer H. Garvin, Thomas R. Ten Have
AMIA1
2003 Derivation of Malignancy Status from ICD-9 Codes
Mark G. Weiner, Alice Livshits, Carol Carozzoni, Erin McMenamin, Gene Gibson, Alison W. Loren, Sean Hennessy
AMIA1
2002 Information Systems Developments to Detect and Analyze Chemotherapy-associated Adverse Drug Events
Mark G. Weiner, Alice Livshits, Carol Carozzoni, Erin McMenamin, Gene Gibson, Alison W. Loren, Sean Hennessy
AMIA1
2001 Web-based, Interactive Receiver Operating Characteristics (ROC) Analysis
Mark G. Weiner, Robert M. Centor
AMIA1
2001 Metadata Tables to Enable Dynamic Data Modeling and Web Interface Design: The SEER Example
Mark G. Weiner, Micah Sherr, Abigail Cohen
AMIA1
1999 Web-Based Linear Regression Analysis of Remote Datasets
Mark G. Weiner, Abigail Cohen, Meena Seshamani, Alice Livshits, Alan Hillman
AMIA1
1998 Virtual clinical trials: case control experiments utilizing a health services research workstation
Mark G. Weiner, Alan Hillman
AMIA1