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Monique Zahn-Zabal

dblp:55/2525 · DBLP profile ↗
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2ranked-venue papers
0as first author
0since 2021 · last 2020
0000-0001-7961-6091ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › genome annotation
sequence annotation visualization
0.412020
The Feature-Viewer: a visualization tool for positional annotations on a sequence · Bioinform. 2020
Bioinformatics and computational biology › proteomics
peptide identification
0.312017
The neXtProt peptide uniqueness checker: a tool for the proteomics community · Bioinform. 2017
Bioinformatics and computational biology
proteomics
0.312017
The neXtProt peptide uniqueness checker: a tool for the proteomics community · Bioinform. 2017
Bioinformatics and computational biology › biological database
protein sequence database
0.112017
The neXtProt peptide uniqueness checker: a tool for the proteomics community · Bioinform. 2017

Methods — techniques the papers use, named apart from their topics

web-based visualization library · 0.4sequence indexing · 0.3
YearPublicationVenuePosition
2020 The Feature-Viewer: a visualization tool for positional annotations on a sequence
abstract
SUMMARY: The Feature-Viewer is a lightweight library for the visualization of biological data mapped to a protein or nucleotide sequence. It is designed for ease of use while allowing for a full customization. The library is already used by several biological data resources and allows intuitive visual mapping of a full spectra of sequence features for different usages. AVAILABILITY AND IMPLEMENTATION: The Feature-Viewer is open source, compatible with state-of-the-art development technologies and responsive, also for mobile viewing. Documentation and usage examples are available online.
Lisanna Paladin, Mathieu Schaeffer, Pascale Gaudet, Monique Zahn-Zabal, Pierre-André Michel, Damiano Piovesan, Silvio C. E. Tosatto, Amos Bairoch
Bioinform.4
2017 The neXtProt peptide uniqueness checker: a tool for the proteomics community
abstract
SUMMARY: The neXtProt peptide uniqueness checker allows scientists to define which peptides can be used to validate the existence of human proteins, i.e. map uniquely versus multiply to human protein sequences taking into account isobaric substitutions, alternative splicing and single amino acid variants. AVAILABILITY AND IMPLEMENTATION: The pepx program is available at https://github.com/calipho-sib/pepx and can be launched from the command line or through a cgi web interface. Indexing requires a sequence file in FASTA format. The peptide uniqueness checker tool is freely available on the web at https://www.nextprot.org/tools/peptide-uniqueness-checker and from the neXtProt API at https://api.nextprot.org/. CONTACT: [email protected].
Mathieu Schaeffer, Alain Gateau, Daniel Dinis Teixeira, Pierre-André Michel, Monique Zahn-Zabal, Lydie Lane
Bioinform.5