Julien Abinahed

dblp:55/5759 · also Julien Abi-Nahed · DBLP profile ↗
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18ranked-venue papers
1as first author
5since 2021 · last 2023
0000-0002-6386-4813ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 14 · 1 first-author · 4 since 2021Graphics, computer vision, multimedia, augmented reality and games · 6 · 1 first-authorSystems, architecture and hardware · 2 · 1 since 2021Artificial intelligence and machine learning · 1 · 1 since 2021Human-computer interaction and ubiquitous computing · 1 · 1 since 2021
YearPublicationVenuePosition
2023 Tele-Mentoring Using Augmented Reality: A Feasibility Study to Assess Teaching of Laparoscopic Suturing Skills
abstract
The work assesses the efficacy of computer based remote tele-mentoring system (i.e. when the mentor and mentee are physically separated) for teaching minimally invasive surgical skills. The visual cues used for tele-mentoring comprises real-time virtual surgical instruments' motion augmented onto the operative field and remotely controlled by the mentor. In the feasibility study, the surgical task of laparoscopic intracorporeal suturing was simulated among 18 mentor-mentee pairs. Three modes of mentoring were used. Mode-I included traditional learning using pre-recorded videos (in absence of a mentor). Mode-II used traditional in-person hands-on mentoring. In Mode-III, a tele-mentoring prototype was used that connected a mentee with a remote mentor. Error count and duration were recorded for a learning stage followed by a testing stage for the three modes. The results show the error count for Mode-III reduces significantly as compared to Mode-I in the learning stage. Similarly, the error count for Mode-III also reduces significantly as compared to Mode-I in the testing stage. The errors count for Mode-III were equivalent to that of Mode-II for both learning and teaching stages. Furthermore, in Mode-III the duration reduces from learning to testing stage exhibiting the learning effect. Thus, computer based remote tele-mentoring is effective and more convenient to demonstrate surgical sub-steps consisting of tool-tissue interaction facilitating surgical skill transfer.
Dehlela Shabir, Shidin Balakrishnan, Jhasketan Padhan, Julien Abinahed, Elias Yaacoub, Amr Mohamed 0001, Zhigang Deng 0001, Abdulla Al-Ansari, Panagiotis Tsiamyrtzis, Nikhil V. Navkar
CBMS4
2022 Dynamic Guidance Virtual Fixtures for Guiding Robotic Interventions: Intraoperative MRI-guided Transapical Cardiac Intervention Paradigm
abstract
The advent of intraoperative real-time image guidance has led to the emergence of new surgical interventional paradigms including image-guided robot assistance. Most often the use of an intraoperative imaging modality is limited to visual perception of the area of procedure. In this work, we propose a system for performing interventions with real-time Magnetic Resonance Imaging (rtMRI). The described computational core, processes on-the-fly rtMRI and generates dynamic guidance virtual fixture that in turn is used to update visualization and a force-feedback interface. The system was experimentally tested by applying it to a simulated Transapical Aortic Valve Implantation with a virtual robotic manipulator. The study results demonstrate significant improvement in the surgical task by decreasing the duration of the procedure and increasing safety in the presence of cardiac and breathing motion.
Jhasketan Padhan, Nikolaos V. Tsekos, Abdulla Al-Ansari, Julien Abinahed, Zhigang Deng 0001, Nikhil V. Navkar
BIBE4
2022 Benchmarking Network Performance of Augmented Reality Based Surgical Telementoring Systems
abstract
Telementoring in surgery facilitates the transfer of surgical knowledge from the mentor to the mentee. Augmented Reality (AR) further assists this transfer by overlaying visual cues (e.g., in the form of virtual surgical instrument motion) generated by the mentor onto the operative field of the mentee. In this work, we present a benchmark for comparing such AR based surgical telementoring systems. The results compare the network performances of these systems across different types of surgery (open or minimally invasive), based on the locations of the mentor and the mentee (inter- or intra- country), and finally the underlying networking protocols (RTMP versus WebRTC).
Dehlela Shabir, Malek Anabtawi, Nihal Abdurahiman, May Trinh, Jhasketan Padhan, Abdulla Al-Ansari, Julien Abinahed, Zhigang Deng 0001, Elias Yaacoub, Amr Mohamed 0001, Nikhil V. Navkar
BIBE7
2022 Towards Developing a Liver Segmentation Method for Hepatocellular Carcinoma Treatment Planning
abstract
The delineation of liver difficult due to its similar intensity distributions in CT images. Additionally, there have been other challenges such that the variability in shape, size, and proximity to the other neighboring organs. The blurred liver edges and low contrast on the CT image make the segmentation further challenging. Furthermore, the patient movement during CT data acquisition along with spatial averaging lead to reconstruction artifacts; these are all reflected on the CT image complicating the segmentation task. In this paper, we have proposed a UNet-based automatic liver segmentation approach to delineate the boundaries between the liver and other abdominal organs. The algorithm is tested on publicly available datasets. The average values of Dice similarity coefficient (DC), Relative absolute volume difference (RAVD), Average symmetric surface distance (ASSD), Maximum symmetric surface distance (MSSD), Hausdorff distance (HD), and Precision are found to be 0.95±0.02, 0.04±0.02, 1.03±0.39, 1.15±0.5, 2.85±1.89, and 0.91±0.12, respectively.
Snigdha Mohanty, Julien Abinahed, Abdulla Al-Ansari, Subhashree Mishra, Sudhansu Sekhar Singh, Sarada Dakua
INDIN2
2021 Comparative Study of Extractive Text Summarization Techniques
abstract
Text Summarization is the process of generating a concise and meaningful summary of a text. To better help identify relevant information and consume relevant information faster, automatic text summarizing methods are needed to address the growing amount of text data available online. Text Summarization techniques are classified into abstractive and extractive summarization. The extractive summarization technique focuses on important information like sentences or phrases which are extracted from a given text file or original document and stack them together to create a summary. In this study, we review and compare the performance of three extraction-based summarization techniques which are Conceptual method, Text Rank and Sentence Scoring. Furthermore, we evaluate the quality of summarization by comparing individual methods on unsummarized text with their corresponding human made gold standard summaries.
Ahammed Waseem Palliyali, Maaz Abdulaziz Al-Khalifa, Saad Farooq, Julien Abinahed, Abdulla Al-Ansari, Ali Jaoua
AICCSA4
2020 Evaluation of Interventional Planning Software Features for MR-guided Transrectal Prostate Biopsies
abstract
This work presents an interventional planning software to be used in conjunction with a robotic manipulator to perform transrectal MR guided prostate biopsies. The interventional software was designed taking in consideration a generic manipulator used under the two modes of operation: side-firing and end-firing of the biopsy needle. Studies were conducted with urologists using the software to plan virtual biopsies. The results show features of software relevant for operating efficiently under the two modes of operation.
Jose D. Velazco-Garcia, Nikhil V. Navkar, Shidin Balakrishnan, Julien Abinahed, Abdulla Al-Ansari, Adham Darweesh, Khalid Al-Rumaihi, Eftychios G. Christoforou, Ernst L. Leiss, Mansour A. Karkoub, Panagiotis Tsiamyrtzis, Nikolaos V. Tsekos
BIBE4
2019 Preliminary Evaluation of Robotic Transrectal Biopsy System on an Interventional Planning Software
abstract
Prostate biopsy is considered as a definitive way for diagnosing prostate malignancies. Urologists are currently moving towards MR-guided prostate biopsies over conventional transrectal ultrasound-guided biopsies for prostate cancer detection. Recently, robotic systems have started to emerge as an assistance tool for urologists to perform MR-guided prostate biopsies. However, these robotic assistance systems are designed for a specific clinical environment and cannot be adapted to modifications or changes applied to the clinical setting and/or workflow. This work presents the preliminary design of a cable-driven manipulator developed to be used in both MR scanners and MR-ultrasound fusion systems. The proposed manipulator design and functionality are evaluated on a simulated virtual environment. The simulation is created on an in-house developed interventional planning software to evaluate the ergonomics and usability. The results show that urologists can benefit from the proposed design of the manipulator and planning software to accurately perform biopsies of targeted areas in the prostate.
Jose D. Velazco-Garcia, Ernst L. Leiss, Mansour A. Karkoub, Panagiotis Tsiamyrtzis, Nikolaos V. Tsekos, Nikhil V. Navkar, Shidin Balakrishnan, Julien Abinahed, Abdulla Al-Ansari, Georges Younes 0003, Adham Darweesh, Khalid Al-Rumaihi, Eftychios G. Christoforou
BIBE8
2019 Hemelb Acceleration and Visualization for Cerebral Aneurysms
abstract
A weakness in the wall of a cerebral artery causing a dilation or ballooning of the blood vessel is known as a cerebral aneurysm. Optimal treatment requires fast and accurate diagnosis of the aneurysm. HemeLB is a fluid dynamics solver for complex geometries developed to provide neurosurgeons with information related to the flow of blood in and around aneurysms. On a cost efficient platform, HemeLB could be employed in hospitals to provide surgeons with the simulation results in real-time. In this work, we developed an improved version of HemeLB for GPU implementation and result visualization. A visualization platform for smooth interaction with end users is also presented. Finally, a comprehensive evaluation of this implementation is reported. The results demonstrate that the proposed implementation achieves a maximum performance of 15,168,964 site updates per second, and is capable of speeding up HemeLB for deployment in hospitals and clinical investigations.
Sahar Soheilian Esfahani, Peter V. Coveney, Xiaojun Zhai, Minsi Chen, Abbes Amira, Faycal Bensaali, Julien Abinahed, Sarada Dakua, Georges Younes 0003, Robin A. Richardson
ICIP7
2019 Zynq SoC based acceleration of the lattice Boltzmann method
abstract
Summary Cerebral aneurysm is a life‐threatening condition. It is a weakness in a blood vessel that may enlarge and bleed into the surrounding area. In order to understand the surrounding environmental conditions during the interventions or surgical procedures, a simulation of blood flow in cerebral arteries is needed. One of the effective simulation approaches is to use the lattice Boltzmann (LB) method. Due to the computational complexity of the algorithm, the simulation is usually performed on high performance computers. In this paper, efficient hardware architectures of the LB method on a Zynq system‐on‐chip (SoC) are designed and implemented. The proposed architectures have first been simulated in Vivado HLS environment and later implemented on a ZedBoard using the software‐defined SoC (SDSoC) development environment. In addition, a set of evaluations of different hardware architectures of the LB implementation is discussed in this paper. The experimental results show that the proposed implementation is able to accelerate the processing speed by a factor of 52 compared to a dual‐core ARM processor‐based software implementation.
Xiaojun Zhai, Abbes Amira, Faycal Bensaali, AlMaha Al-Shibani, Asma Al-Nassr, Asmaa El-Sayed, Mohammad Eslami, Sarada Dakua, Julien Abinahed
Concurr. Comput. Pract. Exp.9
2017 Towards a Modular, Customizable Robotic System for Needle-Based Image-Guided Interventions: Preliminary Designs, Implementation, and Testing
abstract
Needle-based image-guided interventions (NB-IGI) are well established practices that are rapidly expanding to a wider range of therapeutic and diagnostic interventions due to their impact on clinical outcomes. In parallel, a number of robotic manipulators are emerging to increase accuracy, decrease inter-operator variabilities, and reduce the duration of the procedure. Most current systems are application-specific, thereby are appropriate for a limited number of procedures and further exacerbating the already rising costs of healthcare. In order to expand clinical usage of robotic NB-IGI, and eventually reduce the burden on healthcare costs, this paper proposes a modular, customizable robotic systems concept. The concept includes simplified hardware and control techniques, and initial results demonstrate that accuracy is within clinically acceptable limits. Preliminary designs, implementations, and assessments of the proposed system demonstrate its potential and clinical value.
Nikhil V. Navkar, Leonardo Barbosa, Shidin Balakrishnan, Julien Abinahed, Walid El Ansari, Khalid Al-Rumaihi, Adham Darweesh, Abdulla Al-Ansari, Nikolaos V. Tsekos, Mansour A. Karkoub, Mohamed Gharib
BIBE4
2016 Pathological liver segmentation using stochastic resonance and cellular automata
Sarada Dakua, Julien Abinahed, Abdulla Al-Ansari
J. Vis. Commun. Image Represent.2
2016 Constrained Statistical Modelling of Knee Flexion From Multi-Pose Magnetic Resonance Imaging
abstract
Reconstruction of the anterior cruciate ligament (ACL) through arthroscopy is one of the most common procedures in orthopaedics. It requires accurate alignment and drilling of the tibial and femoral tunnels through which the ligament graft is attached. Although commercial computer-assisted navigation systems exist to guide the placement of these tunnels, most of them are limited to a fixed pose without due consideration of dynamic factors involved in different knee flexion angles. This paper presents a new model for intraoperative guidance of arthroscopic ACL reconstruction with reduced error particularly in the ligament attachment area. The method uses 3D preoperative data at different flexion angles to build a subject-specific statistical model of knee pose. To circumvent the problem of limited training samples and ensure physically meaningful pose instantiation, homogeneous transformations between different poses and local-deformation finite element modelling are used to enlarge the training set. Subsequently, an anatomical geodesic flexion analysis is performed to extract the subject-specific flexion characteristics. The advantages of the method were also tested by detailed comparison to standard Principal Component Analysis (PCA), nonlinear PCA without training set enlargement, and other state-of-the-art articulated joint modelling methods. The method yielded sub-millimetre accuracy, demonstrating its potential clinical value.
Mihaela Constantinescu, Su-Lin Lee, Nikhil V. Navkar, Weimin Yu, Saifedeen Al-Rawas, Julien Abinahed, Guoyan Zheng, Jennifer Keegan, Abdulla Al-Ansari, Nabil Jomaah, Philippe Landreau, Guang-Zhong Yang
IEEE Trans. Medical Imaging6
2016 Simultaneous Multi-Structure Segmentation and 3D Nonrigid Pose Estimation in Image-Guided Robotic Surgery
abstract
In image-guided robotic surgery, segmenting the endoscopic video stream into meaningful parts provides important contextual information that surgeons can exploit to enhance their perception of the surgical scene. This information provides surgeons with real-time decision-making guidance before initiating critical tasks such as tissue cutting. Segmenting endoscopic video is a challenging problem due to a variety of complications including significant noise attributed to bleeding and smoke from cutting, poor appearance contrast between different tissue types, occluding surgical tools, and limited visibility of the objects' geometries on the projected camera views. In this paper, we propose a multi-modal approach to segmentation where preoperative 3D computed tomography scans and intraoperative stereo-endoscopic video data are jointly analyzed. The idea is to segment multiple poorly visible structures in the stereo/multichannel endoscopic videos by fusing reliable prior knowledge captured from the preoperative 3D scans. More specifically, we estimate and track the pose of the preoperative models in 3D and consider the models' non-rigid deformations to match with corresponding visual cues in multi-channel endoscopic video and segment the objects of interest. Further, contrary to most augmented reality frameworks in endoscopic surgery that assume known camera parameters, an assumption that is often violated during surgery due to non-optimal camera calibration and changes in camera focus/zoom, our method embeds these parameters into the optimization hence correcting the calibration parameters within the segmentation process. We evaluate our technique on synthetic data, ex vivo lamb kidney datasets, and in vivo clinical partial nephrectomy surgery with results demonstrating high accuracy and robustness.
Masoud S. Nosrati, Rafeef Abugharbieh, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Ghassan Hamarneh
IEEE Trans. Medical Imaging4
2015 Automatic segmentation of occluded vasculature via pulsatile motion analysis in endoscopic robot-assisted partial nephrectomy video
Alborz Amir-Khalili, Ghassan Hamarneh, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh
Medical Image Anal.4
2014 Auto Localization and Segmentation of Occluded Vessels in Robot-Assisted Partial Nephrectomy
Alborz Amir-Khalili, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Ghassan Hamarneh, Rafeef Abugharbieh
MICCAI (1)3
2014 Automatic Labelling of Tumourous Frames in Free-Hand Laparoscopic Ultrasound Video
Jeremy Kawahara, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh
MICCAI (2)3
2014 Efficient Multi-organ Segmentation in Multi-view Endoscopic Videos Using Pre-operative Priors
Masoud S. Nosrati, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh
MICCAI (2)3
2006 Robust Active Shape Models: A Robust, Generic and Simple Automatic Segmentation Tool
Julien Abinahed, Marie-Pierre Jolly, Guang-Zhong Yang
MICCAI (2)1