Makoto Yamada

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106ranked-venue papers
25as first author
34since 2021 · last 2025
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 81 · 17 first-author · 29 since 2021Graphics, computer vision, multimedia, augmented reality and games · 21 · 10 first-author · 1 since 2021Databases, data management, data science and information retrieval · 14 · 2 first-author · 6 since 2021Applied, interdisciplinary, general and emerging computing · 4 · 1 since 2021Systems, architecture and hardware · 3Human-computer interaction and ubiquitous computing · 3Theory of computation · 1
YearPublicationVenuePosition
2025 Fast unsupervised ground metric learning with tree-Wasserstein distance
abstract
The performance of unsupervised methods such as clustering depends on the choice of distance metric between features, or ground metric. Commonly, ground metrics are decided with heuristics or learned via supervised algorithms. However, since many interesting datasets are unlabelled, unsupervised ground metric learning approaches have been introduced. One promising option employs Wasserstein singular vectors (WSVs), which emerge when computing optimal transport distances between features and samples simultaneously. WSVs are effective, but can be prohibitively computationally expensive in some applications: $\mathcal{O}(n^2m^2(n \log(n) + m \log(m))$ for $n$ samples and $m$ features. In this work, we propose to augment the WSV method by embedding samples and features on trees, on which we compute the tree-Wasserstein distance (TWD). We demonstrate theoretically and empirically that the algorithm converges to a better approximation of the standard WSV approach than the best known alternatives, and does so with $\mathcal{O}(n^3+m^3+mn)$ complexity. In addition, we prove that the initial tree structure can be chosen flexibly, since tree geometry does not constrain the richness of the approximation up to the number of edge weights. This proof suggests a fast and recursive algorithm for computing the tree parameter basis set, which we find crucial to realising the efficiency gains at scale. Finally, we employ the tree-WSV algorithm to several single-cell RNA sequencing genomics datasets, demonstrating its scalability and utility for unsupervised cell-type clustering problems. These results poise unsupervised ground metric learning with TWD as a low-rank approximation of WSV with the potential for widespread application.
Kira Michaela Düsterwald, Samo Hromadka, Makoto Yamada
ICLR3
2025 PhiNets: Brain-inspired Non-contrastive Learning Based on Temporal Prediction Hypothesis
abstract
Predictive coding has been established as a promising neuroscientific theory to describe the mechanism of information processing in the retina or cortex. This theory hypothesises that cortex predicts sensory inputs at various levels of abstraction to minimise prediction errors. Inspired by predictive coding, Chen et al. (2024) proposed another theory, temporal prediction hypothesis, to claim that sequence memory residing in hippocampus has emerged through predicting input signals from the past sensory inputs. Specifically, they supposed that the CA3 predictor in hippocampus creates synaptic delay between input signals, which is compensated by the following CA1 predictor. Though recorded neural activities were replicated based on the temporal prediction hypothesis, its validity has not been fully explored. In this work, we aim to explore the temporal prediction hypothesis from the perspective of self-supervised learning (SSL). Specifically, we focus on non-contrastive learning, which generates two augmented views of an input image and predicts one from another. Non-contrastive learning is intimately related to the temporal prediction hypothesis because the synaptic delay is implicitly created by StopGradient. Building upon a popular non-contrastive learner, SimSiam, we propose PhiNet, an extension of SimSiam to have two predictors explicitly corresponding to the CA3 and CA1, respectively. Through studying the PhiNet model, we discover two findings. First, meaningful data representations emerge in PhiNet more stably than in SimSiam. This is initially supported by our learning dynamics analysis: PhiNet is more robust to the representational collapse. Second, PhiNet adapts more quickly to newly incoming patterns in online and continual learning scenarios. For practitioners, we additionally propose an extension called X-PhiNet integrated with a momentum encoder, excelling in continual learning. All in all, our work reveals that the temporal prediction hypothesis is a reasonable model in terms of the robustness and adaptivity.
Satoki Ishikawa, Makoto Yamada, Han Bao 0002, Yuki Takezawa
ICLR2
2025 Learning Structured Representations by Embedding Class Hierarchy with Fast Optimal Transport
abstract
To embed structured knowledge within labels into feature representations, prior work (Zeng et al., 2022) proposed to use the Cophenetic Correlation Coefficient (CPCC) as a regularizer during supervised learning. This regularizer calculates pairwise Euclidean distances of class means and aligns them with the corresponding shortest path distances derived from the label hierarchy tree. However, class means may not be good representatives of the class conditional distributions, especially when they are multi-mode in nature. To address this limitation, under the CPCC framework, we propose to use the Earth Mover's Distance (EMD) to measure the pairwise distances among classes in the feature space. We show that our exact EMD method generalizes previous work, and recovers the existing algorithm when class-conditional distributions are Gaussian in the feature space. To further improve the computational efficiency of our method, we introduce the Optimal Transport-CPCC family by exploring four EMD approximation variants. Our most efficient OT-CPCC variant runs in linear time in the size of the dataset, while maintaining competitive performance across datasets and tasks. The code is available at https://github.com/uiuctml/OTCPCC.
Siqi Zeng 0001, Sixian Du, Makoto Yamada, Han Zhao 0002
ICLR3
2024 Fast 1-Wasserstein distance approximations using greedy strategies
abstract
Among numerous linear approximation methods proposed for optimal transport (OT), tree-based methods appear to be fairly reliable, notably for language processing applications. Inspired by these tree methods, we introduce several greedy heuristics aiming to compute even faster approximations of OT. We first explicitly establish the equivalence between greedy matching and optimal transport for tree metrics, and then we show that tree greedy matching can be reduced to greedy matching on a one-dimensional line. Next, we propose two new greedy-based algorithms in one dimension: the $k$-Greedy and 1D-ICT algorithms. This novel approach provides Wasserstein approximations with accuracy similar to the original tree methods on text datasets while being faster in practice. Finally, these algorithms are applicable beyond tree approximations: using sliced projections of the original data still provides fairly good accuracy while eliminating the need for embedding the data in a fixed and rigid tree structure. This property makes these approaches even more versatile than the original tree OT methods.
Guillaume Houry, Han Bao 0002, Han Zhao 0002, Makoto Yamada
AISTATS4
2024 Towards Understanding Jailbreak Attacks in LLMs: A Representation Space Analysis
abstract
Large language models (LLMs) are susceptible to a type of attack known as jailbreaking, which misleads LLMs to output harmful contents.Although there are diverse jailbreak attack strategies, there is no unified understanding on why some methods succeed and others fail.This paper explores the behavior of harmful and harmless prompts in the LLM's representation space to investigate the intrinsic properties of successful jailbreak attacks.We hypothesize that successful attacks share some similar properties: They are effective in moving the representation of the harmful prompt towards the direction to the harmless prompts.We leverage hidden representations into the objective of existing jailbreak attacks to move the attacks along the acceptance direction, and conduct experiments to validate the above hypothesis using the proposed objective.We hope this study provides new insights into understanding how LLMs understand harmfulness information.1 * These authors contributed equally to this work.1 Our code is available at https://github.com/ yuplin2333/representation-space-jailbreak.
Yuping Lin, Han Xu 0002, Yue Xing 0002, Makoto Yamada, Hui Liu 0031, Jiliang Tang
EMNLP5
2024 Structural Fairness-aware Active Learning for Graph Neural Networks
abstract
Graph Neural Networks (GNNs) have seen significant achievements in semi-supervised node classification. Yet, their efficacy often hinges on access to high-quality labeled node samples, which may not always be available in real-world scenarios. While active learning is commonly employed across various domains to pinpoint and label high-quality samples based on data features, graph data present unique challenges due to their intrinsic structures that render nodes non-i.i.d. Furthermore, biases emerge from the positioning of labeled nodes; for instance, nodes closer to the labeled counterparts often yield better performance. To better leverage graph structure and mitigate structural bias in active learning, we present a unified optimization framework (SCARCE), which is also easily incorporated with node features. Extensive experiments demonstrate that the proposed method not only improves the GNNs performance but also paves the way for more fair results.
Haoyu Han 0001, Li Ma 0012, Mohamad Ali Torkamani, Hui Liu 0031, Jiliang Tang, Makoto Yamada
ICLR7
2024 Learning Structured Representations with Hyperbolic Embeddings
abstract
Most real-world datasets consist of a natural hierarchy between classes or an inherent label structure that is either already available or can be constructed cheaply. However, most existing representation learning methods ignore this hierarchy, treating labels as permutation invariant. Recent work [Zeng et al., 2022] proposes using this structured information explicitly, but the use of Euclidean distance may distort the underlying semantic context [Chen et al., 2013]. In this work, motivated by the advantage of hyperbolic spaces in modeling hierarchical relationships, we propose a novel approach HypStructure: a Hyperbolic Structured regularization approach to accurately embed the label hierarchy into the learned representations. HypStructure is a simple-yet-effective regularizer that consists of a hyperbolic tree-based representation loss along with a centering loss, and can be combined with any standard task loss to learn hierarchy-informed features. Extensive experiments on several large-scale vision benchmarks demonstrate the efficacy of HypStructure in reducing distortion and boosting generalization performance especially under low dimensional scenarios. For a better understanding of structured representation, we perform eigenvalue analysis that links the representation geometry to improved Out-of-Distribution (OOD) detection performance seen empirically.
Aditya Sinha, Siqi Zeng 0001, Makoto Yamada, Han Zhao 0002
NeurIPS3
2024 Parameter-free Clipped Gradient Descent Meets Polyak
abstract
Gradient descent and its variants are de facto standard algorithms for training machine learning models. As gradient descent is sensitive to its hyperparameters, we need to tune the hyperparameters carefully using a grid search. However, the method is time-consuming, particularly when multiple hyperparameters exist. Therefore, recent studies have analyzed parameter-free methods that adjust the hyperparameters on the fly. However, the existing work is limited to investigations of parameter-free methods for the stepsize, and parameter-free methods for other hyperparameters have not been explored. For instance, although the gradient clipping threshold is a crucial hyperparameter in addition to the stepsize for preventing gradient explosion issues, none of the existing studies have investigated parameter-free methods for clipped gradient descent. Therefore, in this study, we investigate the parameter-free methods for clipped gradient descent. Specifically, we propose Inexact Polyak Stepsize, which converges to the optimal solution without any hyperparameters tuning, and its convergence rate is asymptotically independent of $L$ under $L$-smooth and $(L_0, L_1)$-smooth assumptions of the loss function, similar to that of clipped gradient descent with well-tuned hyperparameters. We numerically validated our convergence results using a synthetic function and demonstrated the effectiveness of our proposed methods using LSTM, Nano-GPT, and T5.
Yuki Takezawa, Han Bao 0002, Ryoma Sato, Kenta Niwa, Makoto Yamada
NeurIPS5
2024 Implicit neural representation for change detection
abstract
Identifying changes in a pair of 3D aerial LiDAR point clouds, obtained during two distinct time periods over the same geographic region presents a significant challenge due to the disparities in spatial coverage and the presence of noise in the acquisition system. The most commonly used approaches to detecting changes in point clouds are based on supervised methods which necessitate extensive labelled data often unavailable in real-world applications. To address these issues, we propose an unsupervised approach that comprises two components: Implcit Neural Represenation (INR) for continuous shape reconstruction and a Gaussian Mixture Model for categorising changes. INR offers a grid-agnostic representation for encoding bi-temporal point clouds, with unmatched spatial support that can be regularised to enhance high-frequency details and reduce noise. The reconstructions at each timestamp are compared at arbitrary spatial scales, leading to a significant increase in detection capabilities. We apply our method to a benchmark dataset comprising simulated LiDAR point clouds for urban sprawling. This dataset encompasses diverse challenging scenarios, varying in resolutions, input modalities and noise levels. This enables a comprehensive multi-scenario evaluation, comparing our method with the current state-of-the-art approach. We outperform the previous methods by a margin of 10% in the intersection over union metric. In addition, we put our techniques to practical use by applying them in a real-world scenario to identify instances of illicit excavation of archaeological sites and validate our results by comparing them with findings from field experts.
Peter Naylor, Diego Di Carlo, Arianna Traviglia, Makoto Yamada, Marco Fiorucci
WACV4
2024 Bilaterally Normalized Scale-Consistent Sinkhorn Distance for Few-Shot Image Classification
abstract
Few-shot image classification aims at exploring transferable features from base classes to recognize images of the unseen novel classes with only a few labeled images. Existing methods usually compare the support features and query features, which are implemented by either matching the global feature vectors or matching the local feature maps at the same position. However, few labeled images fail to capture all the diverse context and intraclass variations, leading to mismatch issues for existing methods. On one hand, due to the misaligned position and cluttered background, existing methods suffer from the object mismatch issue. On the other hand, due to the scale inconsistency between images, existing methods suffer from the scale mismatch issue. In this article, we propose the bilaterally normalized scale-consistent Sinkhorn distance (BSSD) to solve these issues. First, instead of same-position matching, we use the Sinkhorn distance to find an optimal matching between images, mitigating the object mismatch caused by misaligned position. Meanwhile, we propose the intraimage and interimage attentions as the bilateral normalization on the Sinkhorn distance to suppress the object mismatch caused by background clutter. Second, local feature maps are enhanced with the multiscale pooling strategy, making the Sinkhorn distance possible to find a consistent matching scale between images. Experimental results show the effectiveness of the proposed approach, and we achieve the state-of-the-art on three few-shot benchmarks.
Yanbin Liu 0003, Linchao Zhu, Makoto Yamada, Yi Yang 0001
IEEE Trans. Neural Networks Learn. Syst.4
2023 Nyström Method for Accurate and Scalable Implicit Differentiation
abstract
The essential difficulty of gradient-based bilevel optimization using implicit differentiation is to estimate the inverse Hessian vector product with respect to neural network parameters. This paper proposes to tackle this problem by the Nyström method and the Woodbury matrix identity, exploiting the low-rankness of the Hessian. Compared to existing methods using iterative approximation, such as conjugate gradient and the Neumann series approximation, the proposed method avoids numerical instability and can be efficiently computed in matrix operations without iterations. As a result, the proposed method works stably in various tasks and is faster than iterative approximations. Throughout experiments including large-scale hyperparameter optimization and meta learning, we demonstrate that the Nyström method consistently achieves comparable or even superior performance to other approaches. The source code is available from https://github.com/moskomule/hypergrad.
Ryuichiro Hataya, Makoto Yamada
AISTATS2
2023 Large-scale similarity search with Optimal Transport
abstract
Wasserstein distance is a powerful tool for comparing probability distributions and is widely used for document classification and retrieval tasks in NLP.In particular, it is known as the word mover's distance (WMD) in the NLP community.WMD exhibits excellent performance for various NLP tasks; however, one of its limitations is its computational cost and thus is not useful for large-scale distribution comparisons.In this study, we propose a simple and effective nearest neighbor search based on the Wasserstein distance.Specifically, we employ the L1 embedding method based on the treebased Wasserstein approximation and subsequently used the nearest neighbor search to efficiently find the k-nearest neighbors.Through benchmark experiments, we demonstrate that the proposed approximation has comparable performance to the vanilla Wasserstein distance and can be computed three orders of magnitude faster than the vanilla Wasserstein distance.
Cléa Laouar, Yuki Takezawa, Makoto Yamada
EMNLP3
2023 A linear time approximation of Wasserstein distance with word embedding selection
abstract
Wasserstein distance, which can be computed by solving the optimal transport problem, is a powerful method for measuring the dissimilarity between documents.In the NLP community, it is referred to as word mover's distance (WMD).One of the key challenges of Wasserstein distance is its computational cost since it needs cubic time.Although the Sinkhorn algorithm is a powerful tool to speed up to compute the Wasserstein distance, it still requires square time.Recently, a linear time approximation of the Wasserstein distance including the sliced Wasserstein and the tree-Wasserstein distance (TWD) has been proposed.However, a linear time approximation method suffers when the dimensionality of word vectors is high.In this study, we propose a method to combine feature selection and tree approximation of Wasserstein distance to handle high-dimensional problems.More specifically, we use multiple word embeddings and automatically select useful word embeddings in a tree approximation of Wasserstein distance.To this end, we approximate Wasserstein distance for each word vector by tree approximation technique, and select the discriminative (i.e., large Wasserstein distance) word embeddings by solving an entropic regularized maximization problem.Through our experiments on document classification, our proposed method achieved high performance.
Sho Otao, Makoto Yamada
EMNLP2
2023 Identifying Visitor's Paintings Appreciation for AI Audio Guide in Museums
Mari Saito, Takato Okudo, Makoto Yamada, Seiji Yamada
ICAART (2)3
2023 Robust Graph Dictionary Learning
Weijie Liu 0006, Jiahao Xie 0001, Chao Zhang 0029, Makoto Yamada, Nenggan Zheng, Hui Qian 0001
ICLR4
2023 Optimal Transport for Change Detection on Lidar Point Clouds
abstract
Unsupervised change detection between airborne LiDAR data points, taken at separate times over the same location, can be difficult due to unmatching spatial support and noise from the acquisition system. Most current approaches to detect changes in point clouds rely heavily on the computation of Digital Elevation Models (DEM) images and supervised methods. Obtaining a DEM leads to LiDAR informational loss due to pixelisation, and supervision requires large amounts of labelled data often unavailable in real-world scenarios. We propose an unsupervised approach based on the computation of the transport of 3D LiDAR points over two temporal supports. The method is based on unbalanced optimal transport and can be generalised to any change detection problem with LiDAR data. We apply our approach to publicly available datasets for monitoring urban sprawling in various noise and resolution configurations that mimic several sensors used in practice. Our method allows for unsupervised multi-class classification and outperforms the previous state-of-the-art unsupervised approaches by a significant margin.
Marco Fiorucci, Peter Naylor, Makoto Yamada
IGARSS3
2023 FsNet: Feature Selection Network on High-dimensional Biological Data
abstract
Biological data, including gene expression data, are generally high-dimensional and require efficient, generalizable, and scalable machine-learning methods to discover complex nonlinear patterns. Recent advances in machine learning can be attributed to deep neural networks (DNNs), which perform various tasks in terms of computer vision and natural language processing. However, standard DNNs are inappropriate for high-dimensional datasets generated in biology because they consider numerous parameters, which in turn require numerous samples. In this paper, we propose a DNN-based, nonlinear feature selection method, called the feature selection network (FsNet), for high-dimensional and small sample data. Specifically, FsNet comprises a selection layer that selects features and a reconstruction layer that stabilizes the training. Because a large number of parameters in the selection and reconstruction layers can easily result in overfitting under a limited number of samples, we utilized two tiny networks to predict the large virtual weight matrices of the selection and reconstruction layers. Experimental results on several real-world high-dimensional biological datasets demonstrate the efficacy of the proposed method.
Dinesh Singh 0001, Héctor Climente-González, Mathis Petrovich, Eiryo Kawakami, Makoto Yamada
IJCNN5
2023 Beyond Exponential Graph: Communication-Efficient Topologies for Decentralized Learning via Finite-time Convergence
abstract
Decentralized learning has recently been attracting increasing attention for its applications in parallel computation and privacy preservation. Many recent studies stated that the underlying network topology with a faster consensus rate (a.k.a. spectral gap) leads to a better convergence rate and accuracy for decentralized learning. However, a topology with a fast consensus rate, e.g., the exponential graph, generally has a large maximum degree, which incurs significant communication costs. Thus, seeking topologies with both a fast consensus rate and small maximum degree is important. In this study, we propose a novel topology combining both a fast consensus rate and small maximum degree called the Base-$\left(k+1\right)$ Graph. Unlike the existing topologies, the Base-$\left(k+1\right)$ Graph enables all nodes to reach the exact consensus after a finite number of iterations for any number of nodes and maximum degree $k$. Thanks to this favorable property, the Base-$\left(k+1\right)$ Graph endows Decentralized SGD (DSGD) with both a faster convergence rate and more communication efficiency than the exponential graph. We conducted experiments with various topologies, demonstrating that the Base-$\left(k+1\right)$ Graph enables various decentralized learning methods to achieve higher accuracy with better communication efficiency than the existing topologies. Our code is available at https://github.com/yukiTakezawa/BaseGraph.
Yuki Takezawa, Ryoma Sato, Han Bao 0002, Kenta Niwa, Makoto Yamada
NeurIPS5
2023 GraphLIME: Local Interpretable Model Explanations for Graph Neural Networks
abstract
Graph structured data has wide applicability in various domains such as physics, chemistry, biology, computer vision, and social networks, to name a few. Recently, graph neural networks (GNN) were shown to be successful in effectively representing graph structured data because of their good performance and generalization ability. However, explaining the effectiveness of GNN models is a challenging task because of the complex nonlinear transformations made over the iterations. In this paper, we propose GraphLIME, a local interpretable model explanation for graphs using the Hilbert-Schmidt Independence Criterion (HSIC) Lasso, which is a nonlinear feature selection method. GraphLIME is a generic GNN-model explanation framework that learns a nonlinear interpretable model locally in the subgraph of the node being explained. Through experiments on two real-world datasets, the explanations of GraphLIME are found to be of extraordinary degree and more descriptive in comparison to the existing explanation methods.
Makoto Yamada, Yuan Tian 0016, Dinesh Singh 0001, Yi Chang 0001
IEEE Trans. Knowl. Data Eng.2
2022 Feature screening with kernel knockoffs
abstract
This article analyses three feature screening procedures: Kendall’s Tau and Spearman Rho (TR), Hilbert-Schmidt Independence Criterion (HSIC) and conditional Maximum Mean Discrepancy (cMMD), where the latter is a modified version of the standard MMD for categorical classification. These association measures are not based on any specific underlying model, such as the linear regression. We provide the conditions for which the sure independence screening (SIS) property is satisfied under a lower bound assumption on the minimum signal strength of the association measure. The SIS property for the HSIC and cMMD is established for given bounded and symmetric kernels. Within the high-dimensional setting, we propose a two-step approach to control the false discovery rate (FDR) using the knockoff filtering. The performances of the association measures are assessed through simulated and real data experiments and compared with existing competing screening methods.
Benjamin Poignard, Peter Naylor, Héctor Climente-González, Makoto Yamada
AISTATS4
2022 Fixed Support Tree-Sliced Wasserstein Barycenter
abstract
The Wasserstein barycenter has been widely studied in various fields, including natural language processing, and computer vision. However, it requires a high computational cost to solve the Wasserstein barycenter problem because the computation of the Wasserstein distance requires a quadratic time with respect to the number of supports. By contrast, the Wasserstein distance on a tree, called the tree-Wasserstein distance, can be computed in linear time and allows for the fast comparison of a large number of distributions. In this study, we propose a barycenter under the tree-Wasserstein distance, called the fixed support tree-Wasserstein barycenter (FS-TWB) and its extension, called the fixed support tree-sliced Wasserstein barycenter (FS-TSWB). More specifically, we first show that the FS-TWB and FS-TSWB problems are convex optimization problems and can be solved by using the projected subgradient descent. Moreover, we propose a more efficient algorithm to compute the subgradient and objective function value by using the properties of tree-Wasserstein barycenter problems. Through real-world experiments, we show that, by using the proposed algorithm, the FS-TWB and FS-TSWB can be solved two orders of magnitude faster than the original Wasserstein barycenter.
Yuki Takezawa, Ryoma Sato, Zornitsa Kozareva, Sujith Ravi, Makoto Yamada
AISTATS5
2022 Twin Papers: A Simple Framework of Causal Inference for Citations via Coupling
abstract
The research process includes many decisions, e.g., how to entitle and where to publish the paper. In this paper, we introduce a general framework for investigating the effects of such decisions. The main difficulty in investigating the effects is that we need to know counterfactual results, which are not available in reality. The key insight of our framework is inspired by the existing counterfactual analysis using twins, where the researchers regard twins as counterfactual units. The proposed framework regards a pair of papers that cite each other as twins. Such papers tend to be parallel works, on similar topics, and in similar communities. We investigate twin papers that adopted different decisions, observe the progress of the research impact brought by these studies, and estimate the effect of decisions by the difference in the impacts of these studies. We release our code and data, which we believe are highly beneficial owing to the scarcity of the dataset on counterfactual studies.
Ryoma Sato, Makoto Yamada, Hisashi Kashima
CIKM2
2022 Re-evaluating Word Mover's Distance
abstract
The word mover’s distance (WMD) is a fundamental technique for measuring the similarity of two documents. As the crux of WMD, it can take advantage of the underlying geometry of the word space by employing an optimal transport formulation. The original study on WMD reported that WMD outperforms classical baselines such as bag-of-words (BOW) and TF-IDF by significant margins in various datasets. In this paper, we point out that the evaluation in the original study could be misleading. We re-evaluate the performances of WMD and the classical baselines and find that the classical baselines are competitive with WMD if we employ an appropriate preprocessing, i.e., L1 normalization. In addition, we introduce an analogy between WMD and L1-normalized BOW and find that not only the performance of WMD but also the distance values resemble those of BOW in high dimensional spaces.
Ryoma Sato, Makoto Yamada, Hisashi Kashima
ICML2
2022 Feature-Robust Optimal Transport for High-Dimensional Data
Mathis Petrovich, Chao Liang 0002, Ryoma Sato, Yanbin Liu 0003, Yao-Hung Tsai, Linchao Zhu, Yi Yang 0001, Ruslan Salakhutdinov, Makoto Yamada
ECML/PKDD (5)9
2022 Feature selection for discovering distributional treatment effect modifiers
abstract
Finding the features relevant to the difference in treatment effects is essential to unveil the underlying causal mechanisms. Existing methods seek such features by measuring how greatly the feature attributes affect the degree of the {\it conditional average treatment effect} (CATE). However, these methods may overlook important features because CATE, a measure of the average treatment effect, cannot detect differences in distribution parameters other than the mean (e.g., variance). To resolve this weakness of existing methods, we propose a feature selection framework for discovering {\it distributional treatment effect modifiers}. We first formulate a feature importance measure that quantifies how strongly the feature attributes influence the discrepancy between potential outcome distributions. Then we derive its computationally efficient estimator and develop a feature selection algorithm that can control the type I error rate to the desired level. Experimental results show that our framework successfully discovers important features and outperforms the existing mean-based method.
Yoichi Chikahara, Makoto Yamada, Hisashi Kashima
UAI2
2022 Constant Time Graph Neural Networks
abstract
The recent advancements in graph neural networks (GNNs) have led to state-of-the-art performances in various applications, including chemo-informatics, question-answering systems, and recommender systems. However, scaling up these methods to huge graphs, such as social networks and Web graphs, remains a challenge. In particular, the existing methods for accelerating GNNs either are not theoretically guaranteed in terms of the approximation error or incurred at least a linear time computation cost. In this study, we reveal the query complexity of the uniform node sampling scheme for Message Passing Neural Networks, including GraphSAGE, graph attention networks (GATs), and graph convolutional networks (GCNs). Surprisingly, our analysis reveals that the complexity of the node sampling method is completely independent of the number of the nodes, edges, and neighbors of the input and depends only on the error tolerance and confidence probability while providing a theoretical guarantee for the approximation error. To the best of our knowledge, this is the first article to provide a theoretical guarantee of approximation for GNNs within constant time. Through experiments with synthetic and real-world datasets, we investigated the speed and precision of the node sampling scheme and validated our theoretical results.
Ryoma Sato, Makoto Yamada, Hisashi Kashima
ACM Trans. Knowl. Discov. Data2
2021 Flow-based Alignment Approaches for Probability Measures in Different Spaces
abstract
Gromov-Wasserstein (GW) is a powerful tool to compare probability measures whose supports are in different metric spaces. However, GW suffers from a computational drawback since it requires to solve a complex non-convex quadratic program. In this work, we consider a specific family of cost metrics, namely, tree metrics for supports of each probability measure, to develop efficient and scalable discrepancies between the probability measures. Leveraging a tree structure, we propose to align flows from a root to each support instead of pair-wise tree metrics of supports, i.e., flows from a support to another support, in GW. Consequently, we propose a novel discrepancy, named Flow-based Alignment (FlowAlign), by matching the flows of the probability measures. FlowAlign is computationally fast and scalable for large-scale applications. Further exploring the tree structure, we propose a variant of FlowAlign, named Depth-based Alignment (DepthAlign), by aligning the flows hierarchically along each depth level of the tree structures. Theoretically, we prove that both FlowAlign and DepthAlign are pseudo-metrics. We also derive tree-sliced variants of the proposed discrepancies for applications without prior knowledge about tree structures for probability measures, computed by averaging FlowAlign/DepthAlign using random tree metrics, adaptively sampled from supports of probability measures. Empirically, we test our proposed approaches against other variants of GW baselines on a few benchmark tasks.
Tam Le, Nhat Ho, Makoto Yamada
AISTATS3
2021 Post-selection inference with HSIC-Lasso
abstract
Detecting influential features in non-linear and/or high-dimensional data is a challenging and increasingly important task in machine learning. Variable selection methods have thus been gaining much attention as well as post-selection inference. Indeed, the selected features can be significantly flawed when the selection procedure is not accounted for. We propose a selective inference procedure using the so-called model-free "HSIC-Lasso" based on the framework of truncated Gaussians combined with the polyhedral lemma. We then develop an algorithm, which allows for low computational costs and provides a selection of the regularisation parameter. The performance of our method is illustrated by both artificial and real-world data based experiments, which emphasise a tight control of the type-I error, even for small sample sizes.
Tobias Freidling, Benjamin Poignard, Héctor Climente-González, Makoto Yamada
ICML4
2021 Optimal Transport Kernels for Sequential and Parallel Neural Architecture Search
abstract
Neural architecture search (NAS) automates the design of deep neural networks. One of the main challenges in searching complex and non-continuous architectures is to compare the similarity of networks that the conventional Euclidean metric may fail to capture. Optimal transport (OT) is resilient to such complex structure by considering the minimal cost for transporting a network into another. However, the OT is generally not negative definite which may limit its ability to build the positive-definite kernels required in many kernel-dependent frameworks. Building upon tree-Wasserstein (TW), which is a negative definite variant of OT, we develop a novel discrepancy for neural architectures, and demonstrate it within a Gaussian process surrogate model for the sequential NAS settings. Furthermore, we derive a novel parallel NAS, using quality k-determinantal point process on the GP posterior, to select diverse and high-performing architectures from a discrete set of candidates. Empirically, we demonstrate that our TW-based approaches outperform other baselines in both sequential and parallel NAS.
Tam Le, Makoto Yamada, Michael A. Osborne
ICML3
2021 Supervised Tree-Wasserstein Distance
abstract
To measure the similarity of documents, the Wasserstein distance is a powerful tool, but it requires a high computational cost. Recently, for fast computation of the Wasserstein distance, methods for approximating the Wasserstein distance using a tree metric have been proposed. These tree-based methods allow fast comparisons of a large number of documents; however, they are unsupervised and do not learn task-specific distances. In this work, we propose the Supervised Tree-Wasserstein (STW) distance, a fast, supervised metric learning method based on the tree metric. Specifically, we rewrite the Wasserstein distance on the tree metric by the parent-child relationships of a tree, and formulate it as a continuous optimization problem using a contrastive loss. Experimentally, we show that the STW distance can be computed fast, and improves the accuracy of document classification tasks. Furthermore, the STW distance is formulated by matrix multiplications, runs on a GPU, and is suitable for batch processing. Therefore, we show that the STW distance is extremely efficient when comparing a large number of documents.
Yuki Takezawa, Ryoma Sato, Makoto Yamada
ICML3
2021 Adversarial Regression with Doubly Non-negative Weighting Matrices
abstract
Many machine learning tasks that involve predicting an output response can be solved by training a weighted regression model. Unfortunately, the predictive power of this type of models may severely deteriorate under low sample sizes or under covariate perturbations. Reweighting the training samples has aroused as an effective mitigation strategy to these problems. In this paper, we propose a novel and coherent scheme for kernel-reweighted regression by reparametrizing the sample weights using a doubly non-negative matrix. When the weighting matrix is confined in an uncertainty set using either the log-determinant divergence or the Bures-Wasserstein distance, we show that the adversarially reweighted estimate can be solved efficiently using first-order methods. Numerical experiments show that our reweighting strategy delivers promising results on numerous datasets.
Tam Le, Truyen Nguyen, Makoto Yamada, Jose H. Blanchet
NeurIPS3
2021 Dynamic Sasvi: Strong Safe Screening for Norm-Regularized Least Squares
abstract
A recently introduced technique, called safe screening,'' for a sparse optimization problem allows us to identify irrelevant variables in the early stages of optimization. In this paper, we first propose a flexible framework for safe screening based on the Fenchel--Rockafellar duality and then derive a strong safe screening rule for norm-regularized least squares using the proposed framework. We refer to the proposed screening rule for norm-regularized least squares asdynamic Sasvi'' because it can be interpreted as a generalization of Sasvi. Unlike the original Sasvi, it does not require the exact solution of a more strongly regularized problem; hence, it works safely in practice. We show that our screening rule always eliminates more features compared with the existing state-of-the-art methods.
Hiroaki Yamada 0006, Makoto Yamada
NeurIPS2
2021 LSMI-Sinkhorn: Semi-supervised Mutual Information Estimation with Optimal Transport
Yanbin Liu 0003, Makoto Yamada, Yao-Hung Tsai, Tam Le, Ruslan Salakhutdinov, Yi Yang 0001
ECML/PKDD (1)2
2021 Random Features Strengthen Graph Neural Networks
abstract
Graph neural networks (GNNs) are powerful machine learning models for various graph learning tasks. Recently, the limitations of the expressive power of various GNN models have been revealed. For example, GNNs cannot distinguish some non-isomorphic graphs and they cannot learn efficient graph algorithms. In this paper, we demonstrate that GNNs become powerful just by adding a random feature to each node. We prove that the random features enable GNNs to learn almost optimal polynomial-time approximation algorithms for the minimum dominating set problem and maximum matching problem in terms of approximation ratios. The main advantage of our method is that it can be combined with off-the-shelf GNN models with slight modifications. Through experiments, we show that the addition of random features enables GNNs to solve various problems that normal GNNs, including the graph convolutional networks (GCNs) and graph isomorphism networks (GINs), cannot solve.
Ryoma Sato, Makoto Yamada, Hisashi Kashima
SDM2
2020 Unsupervised Nonlinear Feature Selection from High-Dimensional Signed Networks
abstract
With the rapid development of social media services in recent years, relational data are explosively growing. The signed network, which consists of a mixture of positive and negative links, is an effective way to represent the friendly and hostile relations among nodes, which can represent users or items. Because the features associated with a node of a signed network are usually incomplete, noisy, unlabeled, and high-dimensional, feature selection is an important procedure to eliminate irrelevant features. However, existing network-based feature selection methods are linear methods, which means they can only select features that having the linear dependency on the output values. Moreover, in many social data, most nodes are unlabeled; therefore, selecting features in an unsupervised manner is generally preferred. To this end, in this paper, we propose a nonlinear unsupervised feature selection method for signed networks, called SignedLasso. This method can select a small number of important features with nonlinear associations between inputs and output from a high-dimensional data. More specifically, we formulate unsupervised feature selection as a nonlinear feature selection problem with the Hilbert-Schmidt Independence Criterion Lasso (HSIC Lasso), which can find a small number of features in a nonlinear manner. Then, we propose the use of a deep learning-based node embedding to represent node similarity without label information and incorporate the node embedding into the HSIC Lasso. Through experiments on two real world datasets, we show that the proposed algorithm is superior to existing linear unsupervised feature selection methods.
Tingyu Xia, Huiyan Sun, Makoto Yamada, Yi Chang 0001
AAAI4
2020 More Powerful Selective Kernel Tests for Feature Selection
abstract
Refining one’s hypotheses in light of data is a commonplace scientific practice, however,this approach introduces selection bias and can lead to specious statisticalanalysis.One approach of addressing this phenomena is via conditioning on the selection procedure, i.e., how we have used the data to generate our hypotheses, and prevents information to be used again after selection.Many selective inference (a.k.a. post-selection inference) algorithms typically take this approach but will “over-condition”for sake of tractability. While this practice obtains well calibrated $p$-values,it can incur a major loss in power. In our work, we extend two recent proposals for selecting features using the Maximum Mean Discrepancyand Hilbert Schmidt Independence Criterion to condition on the minimalconditioning event. We show how recent advances inmultiscale bootstrap makesthis possible and demonstrate our proposal over a range of synthetic and real world experiments.Our results show that our proposed test is indeed more powerful in most scenarios.
Jen Ning Lim, Makoto Yamada, Wittawat Jitkrittum, Yoshikazu Terada, Shigeyuki Matsui, Hidetoshi Shimodaira
AISTATS2
2020 Sparse Hilbert-Schmidt Independence Criterion Regression
abstract
Feature selection is a fundamental problem for machine learning and statistics, and it has been widely studied over the past decades. However, the majority of feature selection algorithms are based on linear models, and the nonlinear feature selection problem has not been well studied compared to linear models, in particular for the high-dimensional case. In this paper, we propose the sparse Hilbert–Schmidt Independence Criterion (SpHSIC) regression, which is a versatile nonlinear feature selection algorithm based on the HSIC and is a continuous optimization variant of the well-known minimum redundancy maximum relevance (mRMR) feature selection algorithm. More specifically, the SpHSIC consists of two parts: the convex HSIC loss function on the one hand and the regularization term on the other hand, where we consider the Lasso, Bridge, MCP, and SCAD penalties. We prove that the sparsity based HSIC regression estimator satisfies the oracle property; that is, the sparsity-based estimator recovers the true underlying sparse model and is asymptotically normally distributed. On the basis of synthetic and real-world experiments, we illustrate this theoretical property and highlight the fact that the proposed algorithm performs well in the high-dimensional setting.
Benjamin Poignard, Makoto Yamada
AISTATS2
2020 Semantic Correspondence as an Optimal Transport Problem
abstract
Establishing dense correspondences across semantically similar images is a challenging task. Due to the large intra-class variation and background clutter, two common issues occur in current approaches. First, many pixels in a source image are assigned to one target pixel, i.e., many to one matching. Second, some object pixels are assigned to the background pixels, i.e., background matching. We solve the first issue by global feature matching, which maximizes the total matching correlations between images to obtain a global optimal matching matrix. The row sum and column sum constraints are enforced on the matching matrix to induce a balanced solution, thus suppressing the many to one matching. We solve the second issue by applying a staircase function on the class activation maps to re-weight the importance of pixels into four levels from foreground to background. The whole procedure is combined into a unified optimal transport algorithm by converting the maximization problem to the optimal transport formulation and incorporating the staircase weights into optimal transport algorithm to act as empirical distributions. The proposed algorithm achieves state-of-the-art performance on four benchmark datasets. Notably, a 26\% relative improvement is achieved on the large-scale SPair-71k dataset.
Yanbin Liu 0003, Linchao Zhu, Makoto Yamada, Yi Yang 0001
CVPR3
2020 Simultaneous Link Prediction on Unaligned Networks Using Graph Embedding and Optimal Transport
abstract
Link prediction is an extensively studied topic and various methods have been proposed to tackle the task in both heuristic and more sophisticated statistical learning approaches. However, most of them focus on the setting of one single graph. Combining information on multiple graphs with similar topological structures can improve the performance and robustness of link prediction; nevertheless, the alignment between nodes of different networks is not always available, or is only partially known. This study considers the link prediction problem on two unaligned networks simultaneously. A new framework is proposed to integrate link prediction using graph embedding and node alignment using optimal transport. The integrated objective is optimized at once via an iterative algorithm. A showcase of the proposed framework using LINE embedding method is discussed with experiments on three real datasets. The results demonstrate that the integrated formulation shows better link prediction performance over single-graph link prediction methods as well as existing methods that do not directly aim at link prediction. The framework is flexible and theoretically able to integrate with different graph embedding methods, which is demonstrated in additional experiments using node2vec.
Luu Huu Phuc, Koh Takeuchi 0001, Makoto Yamada, Hisashi Kashima
DSAA3
2020 Topological Bayesian Optimization with Persistence Diagrams
abstract
Finding an optimal parameter of a black-box function is important for searching stable material structures and finding optimal neural network structures, and Bayesian optimization algorithms are widely used for the purpose. However, most of existing Bayesian optimization algorithms can only handle vector data and cannot handle complex structured data. In this paper, we propose the topological Bayesian optimization, which can efficiently find an optimal solution from structured data using \emph{topological information}. More specifically, in order to apply Bayesian optimization to structured data, we extract useful topological information from a structure and measure the proper similarity between structures. To this end, we utilize persistent homology, which is a topological data analysis method that was recently applied in machine learning. Moreover, we propose the Bayesian optimization algorithm that can handle multiple types of topological information by using a linear combination of kernels for persistence diagrams. Through experiments, we show that topological information extracted by persistent homology contributes to a more efficient search for optimal structures compared to the random search baseline and the graph Bayesian optimization algorithm.
Tatsuya Shiraishi, Tam Le, Hisashi Kashima, Makoto Yamada
ECAI4
2020 Fast Unbalanced Optimal Transport on a Tree
abstract
This study examines the time complexities of the unbalanced optimal transport problems from an algorithmic perspective for the first time. We reveal which problems in unbalanced optimal transport can/cannot be solved efficiently. Specifically, we prove that the Kantorovich Rubinstein distance and optimal partial transport in Euclidean metric cannot be computed in strongly subquadratic time under the strong exponential time hypothesis. Then, we propose an algorithm that solves a more general unbalanced optimal transport problem exactly in quasi-linear time on a tree metric. The proposed algorithm processes a tree with one million nodes in less than one second. Our analysis forms a foundation for the theoretical study of unbalanced optimal transport algorithms and opens the door to the applications of unbalanced optimal transport to million-scale datasets.
Ryoma Sato, Makoto Yamada, Hisashi Kashima
NeurIPS2
2020 Neural Methods for Point-wise Dependency Estimation
abstract
Since its inception, the neural estimation of mutual information (MI) has demonstrated the empirical success of modeling expected dependency between high-dimensional random variables. However, MI is an aggregate statistic and cannot be used to measure point-wise dependency between different events. In this work, instead of estimating the expected dependency, we focus on estimating point-wise dependency (PD), which quantitatively measures how likely two outcomes co-occur. We show that we can naturally obtain PD when we are optimizing MI neural variational bounds. However, optimizing these bounds is challenging due to its large variance in practice. To address this issue, we develop two methods (free of optimizing MI variational bounds): Probabilistic Classifier and Density-Ratio Fitting. We demonstrate the effectiveness of our approaches in 1) MI estimation, 2) self-supervised representation learning, and 3) cross-modal retrieval task.
Yao-Hung Tsai, Han Zhao 0002, Makoto Yamada, Louis-Philippe Morency, Ruslan Salakhutdinov
NeurIPS3
2020 Scaled Coupled Norms and Coupled Higher-Order Tensor Completion
abstract
has been proposed as a convex solution to coupled tensor completion. Coupled norms have been designed by combining low-rank inducing tensor norms with the matrix trace norm. Though coupled norms have shown good performances, they have two major limitations: they do not have a method to control the regularization of coupled modes and uncoupled modes, and they are not optimal for couplings among higher-order tensors. In this letter, we propose a method that scales the regularization of coupled components against uncoupled components to properly induce the low-rankness on the coupled mode. We also propose coupled norms for higher-order tensors by combining the square norm to coupled norms. Using the excess risk-bound analysis, we demonstrate that our proposed methods lead to lower risk bounds compared to existing coupled norms. We demonstrate the robustness of our methods through simulation and real-data experiments.
Kishan Wimalawarne, Makoto Yamada, Hiroshi Mamitsuka
Neural Comput.2
2019 Learning to Sample Hard Instances for Graph Algorithms
abstract
\textit{Hard instances}, which require a long time for a specific algorithm to solve, help (1) analyze the algorithm for accelerating it and (2) build a good benchmark for evaluating the performance of algorithms. There exist several efforts for automatic generation of hard instances. For example, evolutionary algorithms have been utilized to generate hard instances. However, they generate only finite number of hard instances. The merit of such methods is limited because it is difficult to extract meaningful patterns from small number of instances. We seek for a probabilistic generator of hard instances. Once the generative distribution of hard instances is obtained, we can sample a variety of hard instances to build a benchmark, and we can extract meaningful patterns of hard instances from sampled instances. The existing methods for modeling the hard instance distribution rely on parameters or rules that are found by domain experts; however, they are specific to the problem. Hence, it is challenging to model the distribution for general cases. In this paper, we focus on graph problems. We propose \textsc{HiSampler}, the hard instance sampler, to model the hard instance distribution of graph algorithms. \textsc{HiSampler} makes it possible to obtain the distribution of hard instances without hand-engineered features. To the best of our knowledge, this is the first method to learn the distribution of hard instances using machine learning. Through experiments, we demonstrate that our proposed method can generate instances that are a few to several orders of magnitude harder than the random-based approach in many settings. In particular, our method outperforms rule-based algorithms in the 3-coloring problem.
Ryoma Sato, Makoto Yamada, Hisashi Kashima
ACML2
2019 Transformer Dissection: An Unified Understanding for Transformer's Attention via the Lens of Kernel
abstract
Yao-Hung Hubert Tsai, Shaojie Bai, Makoto Yamada, Louis-Philippe Morency, Ruslan Salakhutdinov. Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing (EMNLP-IJCNLP). 2019.
Yao-Hung Tsai, Shaojie Bai, Makoto Yamada, Louis-Philippe Morency, Ruslan Salakhutdinov
EMNLP/IJCNLP (1)3
2019 Post Selection Inference with Incomplete Maximum Mean Discrepancy Estimator
Makoto Yamada, Denny Wu, Yao-Hung Tsai, Hirofumi Ohta, Ruslan Salakhutdinov, Ichiro Takeuchi, Kenji Fukumizu
ICLR (Poster)1
2019 Tree-Sliced Variants of Wasserstein Distances
abstract
Optimal transport (\OT) theory defines a powerful set of tools to compare probability distributions. \OT~suffers however from a few drawbacks, computational and statistical, which have encouraged the proposal of several regularized variants of OT in the recent literature, one of the most notable being the \textit{sliced} formulation, which exploits the closed-form formula between univariate distributions by projecting high-dimensional measures onto random lines. We consider in this work a more general family of ground metrics, namely \textit{tree metrics}, which also yield fast closed-form computations and negative definite, and of which the sliced-Wasserstein distance is a particular case (the tree is a chain). We propose the tree-sliced Wasserstein distance, computed by averaging the Wasserstein distance between these measures using random tree metrics, built adaptively in either low or high-dimensional spaces. Exploiting the negative definiteness of that distance, we also propose a positive definite kernel, and test it against other baselines on a few benchmark tasks.
Tam Le, Makoto Yamada, Kenji Fukumizu, Marco Cuturi
NeurIPS2
2019 Kernel Stein Tests for Multiple Model Comparison
abstract
We address the problem of non-parametric multiple model comparison: given $l$ candidate models, decide whether each candidate is as good as the best one(s) or worse than it. We propose two statistical tests, each controlling a different notion of decision errors. The first test, building on the post selection inference framework, provably controls the number of best models that are wrongly declared worse (false positive rate). The second test is based on multiple correction, and controls the proportion of the models declared worse but are in fact as good as the best (false discovery rate). We prove that under appropriate conditions the first test can yield a higher true positive rate than the second. Experimental results on toy and real (CelebA, Chicago Crime data) problems show that the two tests have high true positive rates with well-controlled error rates. By contrast, the naive approach of choosing the model with the lowest score without correction leads to more false positives.
Jen Ning Lim, Makoto Yamada, Bernhard Schölkopf, Wittawat Jitkrittum
NeurIPS2
2019 Approximation Ratios of Graph Neural Networks for Combinatorial Problems
abstract
In this paper, from a theoretical perspective, we study how powerful graph neural networks (GNNs) can be for learning approximation algorithms for combinatorial problems. To this end, we first establish a new class of GNNs that can solve a strictly wider variety of problems than existing GNNs. Then, we bridge the gap between GNN theory and the theory of distributed local algorithms. We theoretically demonstrate that the most powerful GNN can learn approximation algorithms for the minimum dominating set problem and the minimum vertex cover problem with some approximation ratios with the aid of the theory of distributed local algorithms. We also show that most of the existing GNNs such as GIN, GAT, GCN, and GraphSAGE cannot perform better than with these ratios. This paper is the first to elucidate approximation ratios of GNNs for combinatorial problems. Furthermore, we prove that adding coloring or weak-coloring to each node feature improves these approximation ratios. This indicates that preprocessing and feature engineering theoretically strengthen model capabilities.
Ryoma Sato, Makoto Yamada, Hisashi Kashima
NeurIPS2
2019 Effect of Cutting Maneuvers on Center of Foot Pressure Movement in University Tennis Players
abstract
The knee anterior cruciate ligament (ACL) injury is caused by abnormal turning force to knee joint. In particular, cutting maneuvers often cause ACL injury. Therefore, analyze cutting maneuvers is important for preventing ACL injury. In the previous study, there are many things used force plates to measure foot pressure, motion capture using marker, and analyze electromyographic. Till now, there is no study to analyze center of foot pressure (COP). In the measurement of COP distribution, we use the insole type measuring device in this study. The insole type can be attached to the shoes used daily and measured in various environments. Therefore, it can be performed in various places in which the competition is carried out, and it can deal with various action. The purpose of this study is to analyze the motion of cutting maneuvers. The changes of COP distribution by changing angle of cutting maneuvers are clarified. In this study, we defined parameter and compared cutting maneuvers from the values. Our measurement system has 6-axis inertial sensor that attached to the instep. We estimated the timing of direction change and running cycle more accurately by measurement data. The angle of the cutting operation is increased, or non-dominant foot or female, the value of the parameter is large.
Naotaka Tomita, Kouki Nagamune, Makoto Yamada
SMC3
2019 Block HSIC Lasso: model-free biomarker detection for ultra-high dimensional data
abstract
MOTIVATION: Finding non-linear relationships between biomolecules and a biological outcome is computationally expensive and statistically challenging. Existing methods have important drawbacks, including among others lack of parsimony, non-convexity and computational overhead. Here we propose block HSIC Lasso, a non-linear feature selector that does not present the previous drawbacks. RESULTS: We compare block HSIC Lasso to other state-of-the-art feature selection techniques in both synthetic and real data, including experiments over three common types of genomic data: gene-expression microarrays, single-cell RNA sequencing and genome-wide association studies. In all cases, we observe that features selected by block HSIC Lasso retain more information about the underlying biology than those selected by other techniques. As a proof of concept, we applied block HSIC Lasso to a single-cell RNA sequencing experiment on mouse hippocampus. We discovered that many genes linked in the past to brain development and function are involved in the biological differences between the types of neurons. AVAILABILITY AND IMPLEMENTATION: Block HSIC Lasso is implemented in the Python 2/3 package pyHSICLasso, available on PyPI. Source code is available on GitHub (https://github.com/riken-aip/pyHSICLasso). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Héctor Climente-González, Chloé-Agathe Azencott, Samuel Kaski, Makoto Yamada
Bioinform.4
2018 Post Selection Inference with Kernels
abstract
Finding a set of statistically significant features from complex data (e.g., nonlinear and/or multi-dimensional output data) is important for scientific discovery and has a number of practical applications including biomarker discovery. In this paper, we propose a kernel-based post-selection inference (PSI) algorithm that can find a set of statistically significant features from non-linearly related data. Specifically, our PSI algorithm is based on independence measures, and we call it the Hilbert-Schmidt Independence Criterion (HSIC)-based PSI algorithm (hsicInf). The novelty of hsicInf is that it can handle non-linearity and/or multi-variate/multi-class outputs through kernels. Through synthetic experiments, we show that hsicInf can find a set of statistically significant features for both regression and classification problems. We applied hsicInf to real-world datasets and show that it can successfully identify important features.
Makoto Yamada, Yuta Umezu, Kenji Fukumizu, Ichiro Takeuchi
AISTATS1
2018 Learning Unsupervised Word Translations Without Adversaries
abstract
Word translation, or bilingual dictionary induction, is an important capability that impacts many multilingual language processing tasks.Recent research has shown that word translation can be achieved in an unsupervised manner, without parallel seed dictionaries or aligned corpora.However, state of the art methods for unsupervised bilingual dictionary induction are based on generative adversarial models, and as such suffer from their well known problems of instability and hyperparameter sensitivity.We present a statistical dependency-based approach to bilingual dictionary induction that is unsupervised -no seed dictionary or parallel corpora required; and introduces no adversary -therefore being much easier to train.Our method performs comparably to adversarial alternatives and outperforms prior non-adversarial methods.
Tanmoy Mukherjee, Makoto Yamada, Timothy M. Hospedales
EMNLP2
2018 Intra-/inter-user adaptation framework for wearable gesture sensing device
abstract
The photo reflective sensor (PRS), a tiny distant-measurement module, is a popular electronic component widely used in wearable user-interfaces. An unavoidable issue of such wearable PRS devices in practical use is the need of user-independent training to have high gesture recognition accuracy. Each new user has to re-train a device by providing new training data (we call the inter-user setup). Even worse, re-training is also necessary ideally every time when the same user re-wears the device (we call the intra-user setup). In this paper, we propose a domain adaptation framework to reduce this training cost of users. Specifically, we adapt a pre-trained convolutional neural network (CNN) for both inter-user and intra-user setups to maintain the recognition accuracy high. We demonstrate, with an actual PRS device, that our framework significantly improves the average classification accuracy of the intra-user and inter-user setups up to 87.43% and 80.06% against the baseline (non-adapted) setups with the accuracy 68.96% and 63.26% respectively.
Kosuke Kikui, Yuta Itoh 0001, Makoto Yamada, Yuta Sugiura, Maki Sugimoto
UbiComp3
2018 Persistence Fisher Kernel: A Riemannian Manifold Kernel for Persistence Diagrams
abstract
Algebraic topology methods have recently played an important role for statistical analysis with complicated geometric structured data such as shapes, linked twist maps, and material data. Among them, \textit{persistent homology} is a well-known tool to extract robust topological features, and outputs as \textit{persistence diagrams} (PDs). However, PDs are point multi-sets which can not be used in machine learning algorithms for vector data. To deal with it, an emerged approach is to use kernel methods, and an appropriate geometry for PDs is an important factor to measure the similarity of PDs. A popular geometry for PDs is the \textit{Wasserstein metric}. However, Wasserstein distance is not \textit{negative definite}. Thus, it is limited to build positive definite kernels upon the Wasserstein distance \textit{without approximation}. In this work, we rely upon the alternative \textit{Fisher information geometry} to propose a positive definite kernel for PDs \textit{without approximation}, namely the Persistence Fisher (PF) kernel. Then, we analyze eigensystem of the integral operator induced by the proposed kernel for kernel machines. Based on that, we derive generalization error bounds via covering numbers and Rademacher averages for kernel machines with the PF kernel. Additionally, we show some nice properties such as stability and infinite divisibility for the proposed kernel. Furthermore, we also propose a linear time complexity over the number of points in PDs for an approximation of our proposed kernel with a bounded error. Throughout experiments with many different tasks on various benchmark datasets, we illustrate that the PF kernel compares favorably with other baseline kernels for PDs.
Tam Le, Makoto Yamada
NeurIPS2
2018 A Wearable Measurement System for Sole Pressure to Calculate Center of Pressure in Sports Activity
abstract
Sole pressure has been analyzed and reported in recent years in medical and sports fields. However, these studies used a force plate or wired pressure sensor systems which has to be limited to a measurement area. Therefore, it cannot be applied to general sports motion like a marathon. This study set a goal to develop a wearable measurement system for sole pressure to calculate center of pressure (COP) in sports activity. To avoid influence of sports performance, the system should be compact and lightweight. The proposed system is 28.5 g and rigidly hold on shoes. The proposed system was applied to one healthy person. Turning motions in normal step and cross step were measured. The analyzed COP shows the difference of steps. Therefore, this system could be used in real sports motion. A future work is to examine the accuracy and repeatability of the sensors.
Kouki Nagamune, Makoto Yamada
SMC2
2018 Convex Coupled Matrix and Tensor Completion
abstract
We propose a set of convex low-rank inducing norms for coupled matrices and tensors (hereafter referred to as coupled tensors), in which information is shared between the matrices and tensors through common modes. More specifically, we first propose a mixture of the overlapped trace norm and the latent norms with the matrix trace norm, and then, propose a completion model regularized using these norms to impute coupled tensors. A key advantage of the proposed norms is that they are convex and can be used to find a globally optimal solution, whereas existing methods for coupled learning are nonconvex. We also analyze the excess risk bounds of the completion model regularized using our proposed norms and show that they can exploit the low-rankness of coupled tensors, leading to better bounds compared to those obtained using uncoupled norms. Through synthetic and real-data experiments, we show that the proposed completion model compares favorably with existing ones.
Kishan Wimalawarne, Makoto Yamada, Hiroshi Mamitsuka
Neural Comput.2
2018 Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data
abstract
Machine learning methods are used to discover complex nonlinear relationships in biological and medical data. However, sophisticated learning models are computationally unfeasible for data with millions of features. Here, we introduce the first feature selection method for nonlinear learning problems that can scale up to large, ultra-high dimensional biological data. More specifically, we scale up the novel Hilbert-Schmidt Independence Criterion Lasso (HSIC Lasso) to handle millions of features with tens of thousand samples. The proposed method is guaranteed to find an optimal subset of maximally predictive features with minimal redundancy, yielding higher predictive power and improved interpretability. Its effectiveness is demonstrated through applications to classify phenotypes based on module expression in human prostate cancer patients and to detect enzymes among protein structures. We achieve high accuracy with as few as 20 out of one million features-a dimensionality reduction of 99.998 percent. Our algorithm can be implemented on commodity cloud computing platforms. The dramatic reduction of features may lead to the ubiquitous deployment of sophisticated prediction models in mobile health care applications.
Makoto Yamada, Jiliang Tang, Jose Lugo-Martinez, Ermin Hodzic, Raunak Shrestha, Avishek Saha, Hua Ouyang, Dawei Yin 0001, Hiroshi Mamitsuka, Süleyman Cenk Sahinalp, Predrag Radivojac, Filippo Menczer, Yi Chang 0001
IEEE Trans. Knowl. Data Eng.1
2018 Optimizing Whole-Page Presentation for Web Search
abstract
Modern search engines aggregate results from different verticals : webpages, news, images, video, shopping, knowledge cards, local maps, and so on. Unlike “ten blue links,” these search results are heterogeneous in nature and not even arranged in a list on the page. This revolution directly challenges the conventional “ranked list” formulation in ad hoc search. Therefore, finding proper presentation for a gallery of heterogeneous results is critical for modern search engines. We propose a novel framework that learns the optimal page presentation to render heterogeneous results onto search result page (SERP). Page presentation is broadly defined as the strategy to present a set of items on SERP, much more expressive than a ranked list. It can specify item positions, image sizes, text fonts, and any other styles as long as variations are within business and design constraints. The learned presentation is content aware, i.e., tailored to specific queries and returned results. Simulation experiments show that the framework automatically learns eye-catchy presentations for relevant results. Experiments on real data show that simple instantiations of the framework already outperform leading algorithm in federated search result presentation. It means the framework can learn its own result presentation strategy purely from data, without even knowing the “probability ranking principle.”
Yue Wang 0035, Dawei Yin 0001, Luo Jie, Pengyuan Wang 0001, Makoto Yamada, Yi Chang 0001, Qiaozhu Mei
ACM Trans. Web5
2017 Localized Lasso for High-Dimensional Regression
abstract
We introduce the localized Lasso, which learns models that both are interpretable and have a high predictive power in problems with high dimensionality d and small sample size n. More specifically, we consider a function defined by local sparse models, one at each data point. We introduce sample-wise network regularization to borrow strength across the models, and sample-wise exclusive group sparsity (a.k.a., l12 norm) to introduce diversity into the choice of feature sets in the local models. The local models are interpretable in terms of similarity of their sparsity patterns. The cost function is convex, and thus has a globally optimal solution. Moreover, we propose a simple yet efficient iterative least-squares based optimization procedure for the localized Lasso, which does not need a tuning parameter, and is guaranteed to converge to a globally optimal solution. The solution is empirically shown to outperform alternatives for both simulated and genomic personalized/precision medicine data.
Makoto Yamada, Koh Takeuchi 0001, Tomoharu Iwata, John Shawe-Taylor, Samuel Kaski
AISTATS1
2017 Convex Factorization Machine for Toxicogenomics Prediction
abstract
We introduce the convex factorization machine (CFM), which is a convex variant of the widely used Factorization Machines (FMs). Specifically, we employ a linear+quadratic model and regularize the linear term with the ℓ2-regularizer and the quadratic term with the trace norm regularizer. Then, we formulate the CFM optimization as a semidefinite programming problem and propose an efficient optimization procedure with Hazan's algorithm. A key advantage of CFM over existing FMs is that it can find a globally optimal solution, while FMs may get a poor locally optimal solution since the objective function of FMs is non-convex. In addition, the proposed algorithm is simple yet effective and can be implemented easily. Finally, CFM is a general factorization method and can also be used for other factorization problems, including multi-view matrix factorization and tensor completion problems, in various domains including toxicogenomics and bioinformatics. Through synthetic and traditionally used movielens datasets, we first show that the proposed CFM achieves results competitive to FMs. We then show in a toxicogenomics prediction task that CFM predicts the toxic outcomes of a collection of drugs better than a state-of-the-art tensor factorization method.
Makoto Yamada, Wenzhao Lian, Amit Goyal 0001, Kishan Wimalawarne, Suleiman A. Khan, Samuel Kaski, Hiroshi Mamitsuka, Yi Chang 0001
KDD1
2016 Timeline Summarization from Social Media with Life Cycle Models
Yi Chang 0001, Jiliang Tang, Dawei Yin 0001, Makoto Yamada, Yan Liu 0002
IJCAI4
2016 A Robust Convex Formulation for Ensemble Clustering
Junning Gao, Makoto Yamada, Samuel Kaski, Hiroshi Mamitsuka, Shanfeng Zhu
IJCAI2
2016 Multi-view Anomaly Detection via Robust Probabilistic Latent Variable Models
abstract
We propose probabilistic latent variable models for multi-view anomaly detection, which is the task of finding instances that have inconsistent views given multi-view data. With the proposed model, all views of a non-anomalous instance are assumed to be generated from a single latent vector. On the other hand, an anomalous instance is assumed to have multiple latent vectors, and its different views are generated from different latent vectors. By inferring the number of latent vectors used for each instance with Dirichlet process priors, we obtain multi-view anomaly scores. The proposed model can be seen as a robust extension of probabilistic canonical correlation analysis for noisy multi-view data. We present Bayesian inference procedures for the proposed model based on a stochastic EM algorithm. The effectiveness of the proposed model is demonstrated in terms of performance when detecting multi-view anomalies.
Tomoharu Iwata, Makoto Yamada
NIPS2
2016 Beyond Ranking: Optimizing Whole-Page Presentation
abstract
Modern search engines aggregate results from different verticals: webpages, news, images, video, shopping, knowledge cards, local maps, etc. Unlike "ten blue links", these search results are heterogeneous in nature and not even arranged in a list on the page. This revolution directly challenges the conventional "ranked list" formulation in ad hoc search. Therefore, finding proper presentation for a gallery of heterogeneous results is critical for modern search engines.
Yue Wang 0035, Dawei Yin 0001, Luo Jie, Pengyuan Wang 0001, Makoto Yamada, Yi Chang 0001, Qiaozhu Mei
WSDM5
2016 Lifecycle Modeling for Buzz Temporal Pattern Discovery
abstract
In social media analysis, one critical task is detecting a burst of topics or buzz , which is reflected by extremely frequent mentions of certain keywords in a short-time interval. Detecting buzz not only provides useful insights into the information propagation mechanism, but also plays an essential role in preventing malicious rumors. However, buzz modeling is a challenging task because a buzz time-series often exhibits sudden spikes and heavy tails, wherein most existing time-series models fail. In this article, we propose novel buzz modeling approaches that capture the rise and fade temporal patterns via Product Lifecycle (PLC) model, a classical concept in economics. More specifically, we propose to model multiple peaks in buzz time-series with PLC mixture or PLC group mixture and develop a probabilistic graphical model (K-Mixture of Product Lifecycle ( K-MPLC ) to automatically discover inherent lifecycle patterns within a collection of buzzes. Furthermore, we effectively utilize the model parameters of PLC mixture or PLC group mixture for burst prediction. Our experimental results show that our proposed methods significantly outperform existing leading approaches on buzz clustering and buzz-type prediction.
Yi Chang 0001, Makoto Yamada, Antonio Ortega, Yan Liu 0002
ACM Trans. Knowl. Discov. Data2
2015 Consistent Collective Matrix Completion under Joint Low Rank Structure
abstract
We address the collective matrix completion problem of jointly recovering a collection of matrices with shared structure from partial (and potentially noisy) observations. To ensure well–posedness of the problem, we impose a joint low rank structure, wherein each component matrix is low rank and the latent space of the low rank factors corresponding to each entity is shared across the entire collection. We first develop a rigorous algebra for representing and manipulating collective–matrix structure, and identify sufficient conditions for consistent estimation of collective matrices. We then propose a tractable convex estimator for solving the collective matrix completion problem, and provide the first non–trivial theoretical guarantees for consistency of collective matrix completion. We show that under reasonable assumptions stated in Sec. 3.1, with high probability, the proposed estimator exactly recovers the true matrices whenever sample complexity requirements dictated by Theorem 1 are met. The sample complexity requirement derived in the paper are optimum up to logarithmic factors, and significantly improve upon the requirements obtained by trivial extensions of standard matrix completion. Finally, we propose a scalable approximate algorithm to solve the proposed convex program, and corroborate our results through simulated and real life experiments.
Suriya Gunasekar, Makoto Yamada, Dawei Yin 0001, Yi Chang 0001
AISTATS2
2015 Cross-Domain Matching with Squared-Loss Mutual Information
abstract
The goal of cross-domain matching (CDM) is to find correspondences between two sets of objects in different domains in an unsupervised way. CDM has various interesting applications, including photo album summarization where photos are automatically aligned into a designed frame expressed in the Cartesian coordinate system, and temporal alignment which aligns sequences such as videos that are potentially expressed using different features. In this paper, we propose an information-theoretic CDM framework based on squared-loss mutual information (SMI). The proposed approach can directly handle non-linearly related objects/sequences with different dimensions, with the ability that hyper-parameters can be objectively optimized by cross-validation. We apply the proposed method to several real-world problems including image matching, unpaired voice conversion, photo album summarization, cross-feature video and cross-domain video-to-mocap alignment, and Kinect-based action recognition, and experimentally demonstrate that the proposed method is a promising alternative to state-of-the-art CDM methods.
Makoto Yamada, Leonid Sigal, Michalis Raptis, Machiko Toyoda, Yi Chang 0001, Masashi Sugiyama
IEEE Trans. Pattern Anal. Mach. Intell.1
2014 Ups and Downs in Buzzes: Life Cycle Modeling for Temporal Pattern Discovery
abstract
In social media analysis, one critical task is detecting burst of topics or buzz, which is reflected by extremely frequent mentions of certain key words in a short time interval. Detecting buzz not only provides useful insights into the information propagation mechanism, but also plays an essential role in preventing malicious rumors. However, buzz modeling is a challenging task because a buzz time-series usually exhibits sudden spikes and heavy tails, which fails most existing time-series models. To deal with buzz time-series sequences, we propose a novel time-series modeling approach which captures the rise and fade temporal patterns via Product Life Cycle (PLC) models, a classical concept in economics. More specifically, we propose a mixture of PLC models to capture the multiple peaks in buzz time-series and furthermore develop a probabilistic graphical model (K-MPLC) to automatically discover inherent life cycle patterns within a collection of buzzes. Our experiment results show that our proposed method significantly outperforms existing state-of-the-art approaches on buzzes clustering.
Yi Chang 0001, Makoto Yamada, Antonio Ortega, Yan Liu 0002
ICDM2
2014 Domain Adaptation for Structured Regression
Makoto Yamada, Leonid Sigal, Yi Chang 0001
Int. J. Comput. Vis.1
2014 Least-squares independence regression for non-linear causal inference under non-Gaussian noise
Makoto Yamada, Masashi Sugiyama, Jun Sese
Mach. Learn.1
2014 Information-Theoretic Semi-Supervised Metric Learning via Entropy Regularization
abstract
We propose a general information-theoretic approach to semi-supervised metric learning called SERAPH (SEmi-supervised metRic leArning Paradigm with Hypersparsity) that does not rely on the manifold assumption. Given the probability parameterized by a Mahalanobis distance, we maximize its entropy on labeled data and minimize its entropy on unlabeled data following entropy regularization. For metric learning, entropy regularization improves manifold regularization by considering the dissimilarity information of unlabeled data in the unsupervised part, and hence it allows the supervised and unsupervised parts to be integrated in a natural and meaningful way. Moreover, we regularize SERAPH by trace-norm regularization to encourage low-dimensional projections associated with the distance metric. The nonconvex optimization problem of SERAPH could be solved efficiently and stably by either a gradient projection algorithm or an EM-like iterative algorithm whose M-step is convex. Experiments demonstrate that SERAPH compares favorably with many well-known metric learning methods, and the learned Mahalanobis distance possesses high discriminability even under noisy environments.
Gang Niu 0001, Bo Dai 0001, Makoto Yamada, Masashi Sugiyama
Neural Comput.3
2014 Information-Maximization Clustering Based on Squared-Loss Mutual Information
abstract
Information-maximization clustering learns a probabilistic classifier in an unsupervised manner so that mutual information between feature vectors and cluster assignments is maximized. A notable advantage of this approach is that it involves only continuous optimization of model parameters, which is substantially simpler than discrete optimization of cluster assignments. However, existing methods still involve nonconvex optimization problems, and therefore finding a good local optimal solution is not straightforward in practice. In this letter, we propose an alternative information-maximization clustering method based on a squared-loss variant of mutual information. This novel approach gives a clustering solution analytically in a computationally efficient way via kernel eigenvalue decomposition. Furthermore, we provide a practical model selection procedure that allows us to objectively optimize tuning parameters included in the kernel function. Through experiments, we demonstrate the usefulness of the proposed approach.
Masashi Sugiyama, Gang Niu 0001, Makoto Yamada, Manabu Kimura, Hirotaka Hachiya
Neural Comput.3
2014 High-Dimensional Feature Selection by Feature-Wise Kernelized Lasso
abstract
The goal of supervised feature selection is to find a subset of input features that are responsible for predicting output values. The least absolute shrinkage and selection operator (Lasso) allows computationally efficient feature selection based on linear dependency between input features and output values. In this letter, we consider a feature-wise kernelized Lasso for capturing nonlinear input-output dependency. We first show that with particular choices of kernel functions, nonredundant features with strong statistical dependence on output values can be found in terms of kernel-based independence measures such as the Hilbert-Schmidt independence criterion. We then show that the globally optimal solution can be efficiently computed; this makes the approach scalable to high-dimensional problems. The effectiveness of the proposed method is demonstrated through feature selection experiments for classification and regression with thousands of features.
Makoto Yamada, Wittawat Jitkrittum, Leonid Sigal, Eric P. Xing, Masashi Sugiyama
Neural Comput.1
2014 Covariate Shift Adaptation for Discriminative 3D Pose Estimation
abstract
Discriminative, or (structured) prediction, methods have proved effective for variety of problems in computer vision; a notable example is 3D monocular pose estimation. All methods to date, however, relied on an assumption that training (source) and test (target) data come from the same underlying joint distribution. In many real cases, including standard data sets, this assumption is flawed. In the presence of training set bias, the learning results in a biased model whose performance degrades on the (target) test set. Under the assumption of covariate shift, we propose an unsupervised domain adaptation approach to address this problem. The approach takes the form of training instance reweighting, where the weights are assigned based on the ratio of training and test marginals evaluated at the samples. Learning with the resulting weighted training samples alleviates the bias in the learned models. We show the efficacy of our approach by proposing weighted variants of kernel regression (KR) and twin Gaussian processes (TGP). We show that our weighted variants outperform their unweighted counterparts and improve on the state-of-the-art performance in the public (HumanEva) data set.
Makoto Yamada, Leonid Sigal, Michalis Raptis
IEEE Trans. Pattern Anal. Mach. Intell.1
2013 Clustering-based anomaly detection in multi-view data
abstract
This paper proposes a simple yet effective anomaly detection method for multi-view data. The proposed approach detects anomalies by comparing the neighborhoods in different views. Specifically, clustering is performed separately in the different views and affinity vectors are derived for each object from the clustering results. Then, the anomalies are detected by comparing affinity vectors in the multiple views. An advantage of the proposed method over existing methods is that the tuning parameters can be determined effectively from the given data. Through experiments on synthetic and benchmark datasets, we show that the proposed method outperforms existing methods.
Alejandro Marcos Alvarez, Makoto Yamada, Akisato Kimura, Tomoharu Iwata
CIKM2
2013 Change-Point Detection with Feature Selection in High-Dimensional Time-Series Data
Makoto Yamada, Akisato Kimura, Futoshi Naya, Hiroshi Sawada
IJCAI1
2013 Image context discovery from socially curated contents
abstract
This paper proposes a novel method of discovering a set of image contents sharing a specific context (attributes or implicit meaning) with the help of image collections obtained from social curation platforms. Socially curated contents are promising to analyze various kinds of multimedia information, since they are manually filtered and organized based on specific individual preferences, interests or perspectives. Our proposed method fully exploits the process of social curation: (1) How image contents are manually grouped together by users, and (2) how image contents are distributed in the platform. Our method reveals the fact that image contents with a specific context are naturally grouped together and every image content includes really various contexts that cannot necessarily be verbalized by texts.% A preliminary experiment with a small collection of a million of images yields a promising result.
Akisato Kimura, Katsuhiko Ishiguro, Makoto Yamada, Alejandro Marcos Alvarez, Kaori Kataoka, Kazuhiko Murasaki
ACM Multimedia3
2013 Relative Density-Ratio Estimation for Robust Distribution Comparison
abstract
Divergence estimators based on direct approximation of density ratios without going through separate approximation of numerator and denominator densities have been successfully applied to machine learning tasks that involve distribution comparison such as outlier detection, transfer learning, and two-sample homogeneity test. However, since density-ratio functions often possess high fluctuation, divergence estimation is a challenging task in practice. In this letter, we use relative divergences for distribution comparison, which involves approximation of relative density ratios. Since relative density ratios are always smoother than corresponding ordinary density ratios, our proposed method is favorable in terms of nonparametric convergence speed. Furthermore, we show that the proposed divergence estimator has asymptotic variance independent of the model complexity under a parametric setup, implying that the proposed estimator hardly overfits even with complex models. Through experiments, we demonstrate the usefulness of the proposed approach.
Makoto Yamada, Taiji Suzuki, Takafumi Kanamori, Hirotaka Hachiya, Masashi Sugiyama
Neural Comput.1
2013 Change-point detection in time-series data by relative density-ratio estimation
Song Liu 0002, Makoto Yamada, Nigel Collier, Masashi Sugiyama
Neural Networks2
2012 No Bias Left behind: Covariate Shift Adaptation for Discriminative 3D Pose Estimation
Makoto Yamada, Leonid Sigal, Michalis Raptis
ECCV (4)1
2012 Information-theoretic Semi-supervised Metric Learning via Entropy Regularization
Gang Niu 0001, Bo Dai 0001, Makoto Yamada, Masashi Sugiyama
ICML3
2011 Direct Density-Ratio Estimation with Dimensionality Reduction via Hetero-Distributional Subspace Analysis
abstract
Methods for estimating the ratio of two probability density functions have been actively explored recently since they can be used for various data processing tasks such as non-stationarity adaptation, outlier detection, feature selection, and conditional probability estimation. In this paper, we propose a new density-ratio estimator which incorporates dimensionality reduction into the density-ratio estimation procedure. Through experiments, the proposed method is shown to compare favorably with existing density-ratio estimators in terms of both accuracy and computational costs.
Makoto Yamada, Masashi Sugiyama
AAAI1
2011 Stackable ROADM with optical amplifier for use in IP-over-CWDM networks
abstract
A stackable module with a bidirectional CWDM amplifier has been proposed to introduce the optical amplifier into an S-ROADM for use in an IP-over-CWDM ring network, and the performance was evaluated experimentally. Packet transfer changes were monitored during the lightpath reconfigurations, including 2 lightpaths which needed optical amplifications. The result clarified that the lightpaths were reconfigured successfully, including the remote activation of the amplifiers. As a result, the stackable feature of the amplifier module enables us to provide the cost-effective introduction into the network on an implement-it-when-necessary based service in a fully compatible way with the existing stackable ROADM modules, when constructing the S-ROADM with an amplifier. Therefore, the amplifier module can be used in the same way as the ROADM modules to construct the S-ROADM, providing manually adding capability of the amplifier to in-service networks. Thus, the amplifier module has a big advantage to use it flexibly and economically in the IP-over-CWDM networks.
Md. Nooruzzaman, Nguyen Thi Thanh Thuy, Raja Zahilah Raja Mohd Radzi, Osanori Koyama, Makoto Yamada, Yutaka Katsuyama
APCC5
2011 Monitored power pre-checking scheme for optical amplification management in lightpath reconfigurable IP-over-CWDM networks
abstract
A monitored power pre-checking scheme has been proposed and implemented for the effective amplification management during lightpath reconfigurations in IP-over-CWDM networks with ROADMs. The pre-checking performance was examined in an experimental IP-over-CWDM network by reconfiguring lightpaths. As a result, the pre-checking function worked properly, and the lightpaths were reconfigured successfully even for a longer lightpath than the allowable distance, including the amplification management performance. The pre-checking function provides an effective management performance to judge which lightpaths should be amplified, before the reconfiguration.
Raja Zahilah Raja Mohd Radzi, Md. Nooruzzaman, Nguyen Thi Thanh Thuy, Osanori Koyama, Makoto Yamada, Yutaka Katsuyama
APCC5
2011 Automatic audio tag classification via semi-supervised canonical density estimation
abstract
We propose a novel semi-supervised method for building a statistical model that represents the relationship between sounds and text labels ("tags"). The proposed method, named semi-supervised canonical density estimation, makes use of unlabeled sound data in two ways: 1) a low-dimensional latent space representing topics of sounds is extracted by a semi-supervised variant of canonical correlation analysis, and 2) topic models are learned by multi-class extension of semi-supervised kernel density estimation in the topic space. Real-world audio tagging experiments indicate that our pro posed method improves the accuracy even when only a small number of labeled sounds are available.
Jun Takagi, Yasunori Ohishi, Akisato Kimura, Masashi Sugiyama, Makoto Yamada, Hirokazu Kameoka
ICASSP5
2011 On Information-Maximization Clustering: Tuning Parameter Selection and Analytic Solution
Masashi Sugiyama, Makoto Yamada, Manabu Kimura, Hirotaka Hachiya
ICML2
2011 Large-Scale Subjective Evaluations of Speech Rate Control Methods for HMM-Based Speech Synthesizers
abstract
Three speech rate control methods for HMM-based speech synthesis were compared by large-scale subjective evaluations. The methods are 1) synthesizing speech sounds based on HMMs trained from corpora at a target speech rate, 2) stretching or shrinking utterance durations proportionally in waveform generation, and 3) determining state durations based on ML criterion under a restriction of utterance duration. The results indicated that the proportional shrinking had significant advantages for fast rate, whereas HMMs trained from slow speech sounds had a slight advantage for slow rate. We also found an advantage of proportionally shrunk speech from a synthesizer trained from slow speech corpora.
Tsuneo Kato, Makoto Yamada, Nobuyuki Nishizawa, Keiichiro Oura, Keiichi Tokuda
INTERSPEECH2
2011 Relative Density-Ratio Estimation for Robust Distribution Comparison
abstract
Divergence estimators based on direct approximation of density-ratios without going through separate approximation of numerator and denominator densities have been successfully applied to machine learning tasks that involve distribution comparison such as outlier detection, transfer learning, and two-sample homogeneity test. However, since density-ratio functions often possess high fluctuation, divergence estimation is still a challenging task in practice. In this paper, we propose to use relative divergences for distribution comparison, which involves approximation of relative density-ratios. Since relative density-ratios are always smoother than corresponding ordinary density-ratios, our proposed method is favorable in terms of the non-parametric convergence speed. Furthermore, we show that the proposed divergence estimator has asymptotic variance independent of the model complexity under a parametric setup, implying that the proposed estimator hardly overfits even with complex models. Through experiments, we demonstrate the usefulness of the proposed approach.
Makoto Yamada, Taiji Suzuki, Takafumi Kanamori, Hirotaka Hachiya, Masashi Sugiyama
NIPS1
2011 Direct density-ratio estimation with dimensionality reduction via least-squares hetero-distributional subspace search
Masashi Sugiyama, Makoto Yamada, Paul von Bünau, Taiji Suzuki, Takafumi Kanamori, Motoaki Kawanabe
Neural Networks2
2010 Dependence Minimizing Regression with Model Selection for Non-Linear Causal Inference under Non-Gaussian Noise
abstract
The discovery of non-linear causal relationship under additive non-Gaussian noise models has attracted considerable attention recently because of their high flexibility. In this paper, we propose a novel causal inference algorithm called least-squares independence regression (LSIR). LSIR learns the additive noise model through minimization of an estimator of the squared-loss mutual information between inputs and residuals. A notable advantage of LSIR over existing approaches is that tuning parameters such as the kernel width and the regularization parameter can be naturally optimized by cross-validation, allowing us to avoid overfitting in a data-dependent fashion. Through experiments with real-world datasets, we show that LSIR compares favorably with the state-of-the-art causal inference method.
Makoto Yamada, Masashi Sugiyama
AAAI1
2010 Automatic audio tagging using covariate shift adaptation
abstract
Automatically annotating or tagging unlabeled audio files has several applications, such as database organization and recommender systems. We are interested in the case where the system is trained using clean high-quality audio files, but most of the files that need to be automatically tagged during the test phase are heavily compressed and noisy, for instance if they were captured on a mobile device. In this situation we assume the audio files follow a covariate shift model in the acoustic feature space, i.e., the feature distributions are different in the training and test phases, but the conditional distribution of labels given features remains unchanged. Our method uses a specially designed audio similarity measure as input to a set of weighted logistic regressors, which attempt to alleviate the influence of covariate shift. Results on a freely available database of sound files contributed and labeled by non-expert users, demonstrate effective automatic tagging performance.
Gordon Wichern, Makoto Yamada, Harvey D. Thornburg, Masashi Sugiyama, Andreas Spanias
ICASSP2
2010 Direct importance estimation with probabilistic principal component analyzers
abstract
The importance estimation problem (estimating the ratio of two probability density functions) has recently gathered a great deal of attention for use in various applications, e.g., outlier detection and covariate shift adaptation. In this paper, we propose a new importance estimation method using mixtures of probabilistic principal component analyzers (PPCAs). Our method employs the framework of the Kullback-Leibler importance estimation procedure (KLIEP) using using linear or kernel models. The proposed approach entitled PPCA mixture KLIEP (PM-KLIEP) can improve importance estimation accuracy with correlated and rank-deficient data. Through experiments, we show the validity of the proposed approach.
Makoto Yamada, Masashi Sugiyama, Gordon Wichern
ICASSP1
2010 Acceleration of sequence kernel computation for real-time speaker identification
abstract
The sequence kernel has been shown to be a promising kernel function for learning from sequential data such as speech and DNA. However, it is not scalable to massive datasets due to its high computational cost. In this paper, we propose a method of approximating the sequence kernel that is shown to be computationally very efficient. More specifically, we formulate the problem of approximating the sequence kernel as the problem of obtaining a pre-image in a reproducing kernel Hilbert space. The effectiveness of the proposed approximation is demonstrated in text-independent speaker identification experiments with 10 male speakers-our approach provides significant reduction in computation time with limited performance degradation. Based on the proposed method, we develop a real-time kernel-based speaker identification system using Virtual Studio Technology (VST).
Makoto Yamada, Masashi Sugiyama, Gordon Wichern, Tomoko Matsui
ICASSP1
2010 Semi-supervised speaker identification under covariate shift
Makoto Yamada, Masashi Sugiyama, Tomoko Matsui
Signal Process.1
2009 Covariate shift adaptation for semi-supervised speaker identification
abstract
In this paper, we propose a novel semisupervised speaker identification method that can alleviate the influence of non-stationarity such as session dependent variation, the recording environment change, and physical condition/emotion. We assume that the utterance variation follows the covariate shift model, where only the utterance sample distribution changes in the training and test phases. Our method consists of weighted versions of kernel logistic regression and cross-validation and is theoretically shown to have the capability of alleviating the influence of covariate shift. We experimentally show through text-independent speaker identification simulations that the proposed method is promising in dealing with variations in session dependent utterance variation.
Makoto Yamada, Masashi Sugiyama, Tomoko Matsui
ICASSP1
2009 A semi-blind source separation method with a less amount of computation suitable for tiny DSP modules
Kazunobu Kondo, Makoto Yamada, Hideki Kenmochi
INTERSPEECH2
2006 Kernel Wiener Filter with Distance Constraint
abstract
In this paper, we introduce a non-iterative nonlinear kernel Wiener filtering method using kernel canonical correlation analysis (CCA) framework. This approach is based upon the theory of reproducing kernel Hubert spaces. A method is proposed to find approximate Wiener filtered signal in the original signal space by solving an optimization problem in the higher dimensional space. Unlike the conventional iterative approaches which rely on nonlinear optimization problem, our proposed method directly finds the pre-image using distance constraints in the higher mapped domain. The signal estimation and reconstruction capability of the new method is demonstrated and benchmarked on the United States Postal Service (USPS) digits database. Moreover, a comparison with the conventional kernel Wiener filter is presented
Makoto Yamada, Mahmood R. Azimi-Sadjadi
ICASSP (3)1
2005 Relation between kernel CCA and kernel FDA
abstract
In this paper, relation between multi-class linear and kernel Fisher discriminant analysis (FDA) and linear and kernel canonical correlation analysis (CCA) is established. It is shown that in a multi-class classification problem, the CCA between feature vectors (or a nonlinearly mapped version of them) as one-channel and the class label vectors as the second channel is equivalent to multi-class FDA. The multi-class Fisher distance is found to be decomposed into a sum of terms, each of which is determined by a canonical correlation. This result is extended to the kernel formulation without explicit computation of the nonlinear mappings. A simple example is presented to numerically verify the results.
Makoto Yamada, Ali Pezeshki, Mahmood R. Azimi-Sadjadi
IJCNN1
2005 Improvement of rejection performance of keyword spotting using anti-keywords derived from large vocabulary considering acoustical similarity to keywords
Makoto Yamada, Tsuneo Kato, Masaki Naito, Hisashi Kawai
INTERSPEECH1
2001 Packet communications with slotted ALOHA in a mobile cellular system
abstract
We present a simple uplink access technique for packet data communications in a mobile environment. This technique is an application of a random-access communication scheme with slotted ALOHA to a wireless cellular system. All base stations connected to a control station use a common frequency and have synchronized slots. Mobile terminals can transmit packets at any time and do not require slot reservation, handover control, or transmission power control. This system can perform base station diversity reception with selective combining or with maximal ratio combining (MRC) in the uplink. Computer simulation shows that throughput is much improved when base stations use adaptive array antennas. In addition, the effects of the limitation of retransmissions on throughput and service fairness for all mobile terminals are analyzed.
Makoto Yamada, Yoshitaka Hara, Yukiyoshi Kamio, Sliinsuke Hara
VTC Fall1
2000 Acquisition of direct-sequence spread-spectrum signal with parallel matched filters
abstract
A new synchronization acquisition detector for a direct-sequence spread-spectrum (DS-SS) signal is described and evaluated. The detector uses a parallel set of matched filters with multi-valued code-weights as filter-coefficients. It selects the largest sample in a similar way to the conventional parallel acquisition detector, but it uses a much more precise decision scheme. Since the detector uses matched filters with multi-valued coefficients, it can take the synchronized average of each sample to decide whether the acquisition is established or not for shorter duration than the conventional detector. Computer simulation shows that the proposed detector outperforms conventional parallel acquisition detector because its decision mode is very accurate and its synchronized average scheme improves the signal-to-noise ratio (SNR).
Makoto Yamada, Yukiyoshi Kamio, Yoshio Wada
PIMRC1
1996 Development of a mechanotherapy unit for examining the possibility of an intelligent massage robot
abstract
A new approach for developing an intelligent massage robot is presented. Massage is popular as a form of body conditioning and was been mechanized in our country. However, conventional machines have some drawbacks to be improved on providing a certain comfort close to human therapies. We focus on ways to realize kneading massage actions which are considered to be the most difficult for machines. The action is first shown in a physical manner and the control is discussed based on a position/force hybrid controller. Then, some related problems are made apparent which have led to a new concept using a learning or adaptive mechanism. Finally, experiments using a test bed called the MTU (mechanotherapy unit) have proven that there is a good possibility of developing an innovative massage robot.
Masao Kume, Yoshitosi Morita, Yutaka Yamauchi, Hideaki Aoki, Makoto Yamada, Kazuyoshi Tsukamoto
IROS5
1996 An environment for supporting cooperative operation over multiple networks
abstract
If a service extends over multiple networks, network operators of these networks should be able to negotiate service provision and contract establishment with each other. We have developed a support environment allowing such negotiation for a target service of network management of an ATM virtual path network. Network resource information of each network is protected against other network operators' tampering by classifying it according to the level of access permission. User friendly graphical objects in this environment facilitate the use of underlying management functions to manipulate the networks. A videoconferencing system is attached to the environment to help interaction among the operators. With all these features, this environment enables network providers to cooperate with each other to set up VP trails in quick response to customer's demands.
Tatsuo Nohara, Hiroki Tanaka, Hiroshi Ishii 0002, Osamu Miyagashi, Makoto Yamada
NOMS5
1995 Development of a transfer supporting equipment
abstract
The transfer supporting equipment lifts the sick and disabled from beds, and transports them to the bathroom, toilet or elsewhere. At present, such nursing tasks are almost always manually performed, but the awkward positions involved put tremendous physical strain on the attendants. The equipment described not only takes the load off nurses, but restores the mobility of the sick and handicapped. Its superb nursing capability will become invaluable to the aged society in Japan. We developed the patient-care robot under a joint commission from the NEDO and the AIST-MITI. And now, to advance the reliability and simplification of this robot system, we are developing a transfer supporting equipment for a popular utility.
Kazushige Kakutani, Tsunehito Iwaki, Daizo Takaoka, Makoto Yamada, Kazuyoshi Tsukamoto
IROS (3)4
1988 Cleaning robot control
abstract
A small and lightweight cleaning robot powered from the AC power supply is produced for testing purposes. The robot provides a cable-length control function which prevents tangling of the cables during traveling, an ultrasonic sensor function which detects obstacles and dodges them, and a distance measuring function which makes it possible to run parallel to the wall. In a simple room with few obstacles, the robot can travel even if it does not incorporate information but in areas with complicated placement of obstacles, it is necessary to teach the robot the obstacle positions and the room size in advance.>
Fumio Yasutomi, Makoto Yamada, Kazuyoshi Tsukamoto
ICRA2