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David P. Remsen

dblp:57/6179 · DBLP profile ↗
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2ranked-venue papers
0as first author
0since 2021 · last 2009
0000-0003-1289-0840ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Environmental and earth informatics · 100%
Databases, data mining, and information retrieval
1 paper
Information retrieval · 100%

Topics — the 1 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Environmental and earth informatics
biodiversity informatics
0.112007
uBioRSS: Tracking taxonomic literature using RSS · Bioinform. 2007

Methods — techniques the papers use, named apart from their topics

named entity recognition · 0.1
YearPublicationVenuePosition
2009 Location, location, location: utilizing pipelines and services to more effectively georeference the world's biodiversity data
abstract
BACKGROUND: Increasing the quantity and quality of data is a key goal of biodiversity informatics, leading to increased fitness for use in scientific research and beyond. This goal is impeded by a legacy of geographic locality descriptions associated with biodiversity records that are often heterogeneous and not in a map-ready format. The biodiversity informatics community has developed best practices and tools that provide the means to do retrospective georeferencing (e.g., the BioGeomancer toolkit), a process that converts heterogeneous descriptions into geographic coordinates and a measurement of spatial uncertainty. Even with these methods and tools, data publishers are faced with the immensely time-consuming task of vetting georeferenced localities. Furthermore, it is likely that overlap in georeferencing effort is occurring across data publishers. Solutions are needed that help publishers more effectively georeference their records, verify their quality, and eliminate the duplication of effort across publishers. RESULTS: We have developed a tool called BioGeoBIF, which incorporates the high throughput and standardized georeferencing methods of BioGeomancer into a beginning-to-end workflow. Custodians who publish their data to the Global Biodiversity Information Facility (GBIF) can use this system to improve the quantity and quality of their georeferences. BioGeoBIF harvests records directly from the publishers' access points, georeferences the records using the BioGeomancer web-service, and makes results available to data managers for inclusion at the source. Using a web-based, password-protected, group management system for each data publisher, we leave data ownership, management, and vetting responsibilities with the managers and collaborators of each data set. We also minimize the georeferencing task, by combining and storing unique textual localities from all registered data access points, and dynamically linking that information to the password protected record information for each publisher. CONCLUSION: We have developed one of the first examples of services that can help create higher quality data for publishers mediated through the Global Biodiversity Information Facility and its data portal. This service is one step towards solving many problems of data quality in the growing field of biodiversity informatics. We envision future improvements to our service that include faster results returns and inclusion of more georeferencing engines.
Andrew W. Hill, Robert P. Guralnick, Paul Flemons, Reed Beaman, John Wieczorek, Ajay Ranipeta, Vishwas Chavan, David P. Remsen
BMC Bioinform.8
2007 uBioRSS: Tracking taxonomic literature using RSS
abstract
UNLABELLED: Web content syndication through standard formats such as RSS and ATOM has become an increasingly popular mechanism for publishers, news sources and blogs to disseminate regularly updated content. These standardized syndication formats deliver content directly to the subscriber, allowing them to locally aggregate content from a variety of sources instead of having to find the information on multiple websites. The uBioRSS application is a 'taxonomically intelligent' service customized for the biological sciences. It aggregates syndicated content from academic publishers and science news feeds, and then uses a taxonomic Named Entity Recognition algorithm to identify and index taxonomic names within those data streams. The resulting name index is cross-referenced to current global taxonomic datasets to provide context for browsing the publications by taxonomic group. This process, called taxonomic indexing, draws upon services developed specifically for biological sciences, collectively referred to as 'taxonomic intelligence'. Such value-added enhancements can provide biologists with accelerated and improved access to current biological content. AVAILABILITY: http://names.ubio.org/rss/
Patrick R. Leary, David P. Remsen, Catherine N. Norton, Indra Neil Sarkar
Bioinform.2