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Rose Oughtred

dblp:58/6841 · DBLP profile ↗
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2ranked-venue papers
0as first author
0since 2021 · last 2004
0000-0002-6475-3373ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › structural bioinformatics
protein structure determination
0.012004
TargetDB: a target registration database for structural genomics projects · Bioinform. 2004
Bioinformatics and computational biology
structural bioinformatics
0.012004
Ligand Depot: a data warehouse for ligands bound to macromolecules · Bioinform. 2004
Bioinformatics and computational biology › genomics
structural genomics
0.012004
TargetDB: a target registration database for structural genomics projects · Bioinform. 2004
YearPublicationVenuePosition
2004 TargetDB: a target registration database for structural genomics projects
abstract
UNLABELLED: TargetDB is a centralized target registration database that includes protein target data from the NIH structural genomics centers and a number of international sites. TargetDB, which is hosted by the Protein Data Bank (RCSB PDB), provides status information on target sequences and tracks their progress through the various stages of protein production and structure determination. A simple search form permits queries based on contributing site, target ID, protein name, sequence, status and other data. The progress of individual targets or entire structural genomics projects may be tracked over time, and target data from all contributing centers may also be downloaded in the XML format. AVAILABILITY: TargetDB is available at http://targetdb.pdb.org/
Li Chen 0022, Rose Oughtred, Helen M. Berman, John D. Westbrook
Bioinform.2
2004 Ligand Depot: a data warehouse for ligands bound to macromolecules
abstract
UNLABELLED: Ligand Depot is an integrated data resource for finding information about small molecules bound to proteins and nucleic acids. The initial release (version 1.0, November, 2003) focuses on providing chemical and structural information for small molecules found as part of the structures deposited in the Protein Data Bank. Ligand Depot accepts keyword-based queries and also provides a graphical interface for performing chemical substructure searches. A wide variety of web resources that contain information on small molecules may also be accessed through Ligand Depot. AVAILABILITY: Ligand Depot is available at http://ligand-depot.rutgers.edu/. Version 1.0 supports multiple operating systems including Windows, Unix, Linux and the Macintosh operating system. The current drawing tool works in Internet Explorer, Netscape and Mozilla on Windows, Unix and Linux.
Zukang Feng, Li Chen 0022, Himabindu Maddula, Ozgur Akcan, Rose Oughtred, Helen M. Berman, John D. Westbrook
Bioinform.5