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Henrik Bjørn Nielsen

dblp:64/2526 · DBLP profile ↗
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2ranked-venue papers
2as first author
0since 2021 · last 2005
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 2 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
gene expression analysis		 0.112005
Implementation of a gene expression index calculation method based on the PDNN model · Bioinform. 2005
Bioinformatics and computational biology
microarray probe design		 0.012002
Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays · Bioinform. 2002
Bioinformatics and computational biology › gene expression analysis
microarray data analysis		 0.012005
Implementation of a gene expression index calculation method based on the PDNN model · Bioinform. 2005
Bioinformatics and computational biology › genomics
primer design		 0.012002
Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays · Bioinform. 2002

Methods — techniques the papers use, named apart from their topics

PDNN model · 0.1
YearPublicationVenuePosition
2005 Implementation of a gene expression index calculation method based on the PDNN model
abstract
UNLABELLED: Gene expression index calculations from Affymetrix GeneChips have been dominated by the Affymetrix MAS, dChip, and RMA methods. A new method to estimate the gene expression value utilizing the probe sequence information named position-dependent nearest-neighbor (PDNN) has been suggested by Zhang et al. (2003). Here we describe an open source implementation of the PDNN method for the statistical language R. AVAILABILITY: The package can be downloaded from http://www.bioconductor.org/repository/devel/package/html/affypdnn.html CONTACT: [email protected].
Henrik Bjørn Nielsen, Laurent Gautier, Steen Knudsen
 Bioinform.1
2002 Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays
abstract
Abstract Summary: PROBEWIZ designs PCR primers for amplifying probes for cDNA arrays. The probes are designed to have minimal homology to other expressed sequences from a given organism. The primer selection is based on user-defined penalties for homology, primer quality, and proximity to the 3′end. Availability: PROBEWIZ is accessible from http://www.cbs.dtu.dk/services/DNAarray/probewiz.html Contact: [email protected]; [email protected]
Henrik Bjørn Nielsen, Steen Knudsen
 Bioinform.1