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Sung-Keun Rhee

dblp:68/912 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2005
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › microbiology
microbial ecology		 0.112005
Design of long oligonucleotide probes for functional gene detection in a microbial community · Bioinform. 2005
Bioinformatics and computational biology › gene expression analysis
oligonucleotide probe design		 0.112005
Design of long oligonucleotide probes for functional gene detection in a microbial community · Bioinform. 2005
Bioinformatics and computational biology › computational microbiology › microbiome analysis
microbial community analysis		 0.012005
Design of long oligonucleotide probes for functional gene detection in a microbial community · Bioinform. 2005

Methods — techniques the papers use, named apart from their topics

probe design algorithm · 0.1hierarchical clustering · 0.1
YearPublicationVenuePosition
2005 Design of long oligonucleotide probes for functional gene detection in a microbial community
abstract
MOTIVATION: Analysis of the functions of microorganisms and their dynamics in the environment is essential for understanding microbial ecology. For analysis of highly similar sequences of a functional gene family using microarrays, the previous long oligonucleotide probe design strategies have not been useful in generating probes. RESULTS: We developed a Hierarchical Probe Design (HPD) program that designs both sequence-specific probes and hierarchical cluster-specific probes from sequences of a conserved functional gene based on the clustering tree of the genes, specifically for analyses of functional gene diversity in environmental samples. HPD was tested on datasets for the nirS and pmoA genes. Our results showed that HPD generated more sequence-specific probes than several popular oligonucleotide design programs. With a combination of sequence-specific and cluster-specific probes, HPD generated a probe set covering all the sequences of each test set. AVAILABILITY: http://brcapp.kribb.re.kr/HPD/
Won-Hyong Chung, Sung-Keun Rhee, Xiu-Feng Wan, Jin-Woo Bae, Zhe-Xue Quan, Yong-Ha Park
 Bioinform.2