Omolola Ogunyemi

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33ranked-venue papers
8as first author
4since 2021 · last 2025
0000-0002-1388-244XORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 33 · 8 first-author · 4 since 2021Artificial intelligence and machine learning · 2 · 2 first-authorHuman-computer interaction and ubiquitous computing · 2 · 2 first-author
YearPublicationVenuePosition
2025 Developing and sustaining inclusive language in biomedical informatics communications: an AMIA Board of Directors endorsed paper on the Inclusive Language and Context Style Guidelines
abstract
OBJECTIVES: In 2023, AMIA's Inclusive Language and Context Style Guidelines (the "Guidelines") were approved by the Board of Directors and made a publicly available resource. This work began in 2021 through AMIA's DEI Task Force and subsequent DEI Committee; many members provided input, feedback, and time to create the Guidelines. In this paper, the authors provide a transparent account of the origin, development, contents, and dissemination of the Guidelines and share plans for their future development and use. MATERIALS AND METHODS: Our approach to drafting, refining, and distributing the Guidelines included consulting existing language guides, AMIA member reviews, external expert reviews, webinars, and workshops. Through an iterative approach to drafting and refining the Guidelines, the authors consulted relevant language guidelines and many experts throughout and beyond the AMIA community. RESULTS: The Inclusive Language Context Guidelines were formally approved by the AMIA Board of Directors on February 15, 2023. The Guidelines included four principles to be considered in scientific communications: Plurality, Precision, Transparency, and Destigmatization. DISCUSSION: A moment of vulnerability where an AMIA member raised concerns about the use of harmful language during a presentation resulted in the creation of a principled approach to support inclusive language within biomedical and health informatics communications. We envision that the Guidelines will support health equity by challenging dominant public narratives around health, fostering stronger interdisciplinary collaboration and critical thinking about the impact of language, and creating a more welcoming environment for the broader AMIA community. This work could not have been completed without the support of many AMIA members and other researchers in biomedical and health informatics. The Guidelines are a living document that will continue to be updated with input and feedback from the AMIA community into the future.
Oliver J. Bear Don't Walk IV, Shefali Haldar, Duo Helen Wei, Hu Huang 0004, Rebecca L. Rivera, Jungwei Fan 0001, Vipina Kuttichi Keloth, Tiffany I. Leung, Pooja M. Desai, Diane M. Korngiebel, Lisa Grossman Liu, Adrienne Pichon, Vignesh Subbian, Tony Solomonides, Laura K. Wiley, Omolola Ogunyemi, Gretchen Purcell Jackson, Irene Dankwa-Mullan, Lisa Dirks, Avery Rose Everhart, Andrea G. Parker, Bradley E. Iott, Clair A. Kronk, Randi E. Foraker, Krista G. Martin, Tara Anand, Salvatore G. Volpe, Nathan Yung, Rubina F. Rizvi, Robert James Lucero, Tiffani J. Bright
J. Am. Medical Informatics Assoc.16
2022 DRRisk: A Web-based tool to Assess the Risk of Diabetic Retinopathy through Machine Learning on Electronic Health Records
Meghal Gandhi, Lauren Daskivich, Omolola Ogunyemi
AMIA3
2021 Career Development Issues for Women in Biomedical Informatics within Professional Organizations
Donghua Tao, Duo Helen Wei, Rubina F. Rizvi, Deepti Pandita, Bushra Alghamdi, Polina V. Kukhareva, Margarita Sordo, William R. Hersh, Omolola Ogunyemi, Kelly Evans, Gretchen Purcell Jackson
AMIA9
2021 The Women in AMIA-led Podcast: Rebranding and Social Media Optimization to Focus on Diversity
Karmen S. Williams, Mindy K. Ross, María Adela Grando, Tiffany Harman, Rachael Howe, Kelly Evans, Wendy M. Ingram, Davina J. Zamanzadeh, Leyla B. Warsame, Zubin Khan, Anita C. Murcko, Omolola Ogunyemi
AMIA12
2019 Providing Data Security Guidance for Researchers
Douglas S. Bell, Spencer L. SooHoo, Ann S. Chang, Alex A. Bui, Marianne Zachariah, Ross Fleischmann, Omolola Ogunyemi, Robert A. Jenders
AMIA7
2019 2018 Salary Survey of AMIA Members: Factors Associated with Higher Salaries
Yan Cheng 0004, April F. Mohanty, Omolola Ogunyemi, Catherine Arnott Smith, Gondy Leroy, Qing T. Zeng
AMIA3
2018 Lexically Grounded Ontologic Frames for Medical NLP
Ricky K. Taira, Omolola Ogunyemi, Hyeon-Eui Kim
AMIA2
2017 "My work will surely speak for itself: " Visibility, Networking, and Self Promotion in Informatics
Wendy W. Chapman, Murielle S. Beene, Omolola Ogunyemi, Genevieve B. Melton, Laura K. Wiley
AMIA3
2016 Understanding the Knowledge Gap Experienced by U.S. Safety Net Patients in Teleretinal Screening
Sheba M. George, Erin Moran Hayes, Allison Fish, Lauren Patty Daskovich, Omolola Ogunyemi
AMIA5
2016 A Pilot Evaluation of the NIH Common Data Elements for Standardizing the Data Collected in Clinical Research Studies
Marianne Zachariah, Amanda L. Do, Jennifer Imaa, Omolola Ogunyemi, Liz Y. Chen, Spencer L. SooHoo, Kevin Dawson, Robert A. Jenders, Douglas S. Bell
AMIA4
2015 Machine Learning Approaches for Detecting Diabetic Retinopathy from Clinical and Public Health Records
Omolola Ogunyemi, Dulcie Kermah
AMIA1
2013 A CDMS for Tuberculosis with GIS and mHealth Functionalities
Romulo de Castro Jr., Sukrit Mukherjee, Omolola Ogunyemi, Paul Robinson, Sebastien Delta, Raquel Ecarma, John McDonough, Preciosa M. Coloma
AMIA3
2013 mHealth for the CDU Electronic Disease Registry to Improve Chronic Care (CEDRIC)
Sukrit Mukherjee, Omolola Ogunyemi, John McDonough, Romulo de Castro Jr.
AMIA2
2013 Teleretinal Screening for Diabetic Retinopathy in Six Los Angeles Urban Safety-Net Clinics: Final Study Results
Omolola Ogunyemi, Lauren Daskivich, Sheba M. George, Senait Teklehaimanot, Richard Baker 0004
AMIA1
2012 GEOCEDRIC: Spatially Enabling an Electronic Chronic Disease Management System for Urban Safety Net Populations
Paul Robinson, Sukrit Mukherjee, Omolola Ogunyemi, Sheba M. George, Suzie Baldwin, Melvin Dayrit
AMIA3
2009 A comparison of methods for assessing penetrating trauma on retrospective multi-center data
Bilal A. Ahmed, Michael E. Matheny, Phillip L. Rice, John R. Clarke, Omolola Ogunyemi
J. Biomed. Informatics5
2006 Methods for reasoning from geometry about anatomic structures injured by penetrating trauma
Omolola Ogunyemi
J. Biomed. Informatics1
2005 Evaluating the Discriminatory Power of a Computer-based System for Assessing Penetrating Trauma on Retrospective Multi-Center Data
Michael E. Matheny, Omolola Ogunyemi, Phillip L. Rice, John R. Clarke
AMIA2
2004 Review Paper: The InterMed Approach to Sharable Computer-interpretable Guidelines: A Review
abstract
InterMed is a collaboration among research groups from Stanford, Harvard, and Columbia Universities. The primary goal of InterMed has been to develop a sharable language that could serve as a standard for modeling computer-interpretable guidelines (CIGs). This language, called GuideLine Interchange Format (GLIF), has been developed in a collaborative manner and in an open process that has welcomed input from the larger community. The goals and experiences of the InterMed project and lessons that the authors have learned may contribute to the work of other researchers who are developing medical knowledge-based tools. The lessons described include (1) a work process for multi-institutional research and development that considers different viewpoints, (2) an evolutionary lifecycle process for developing medical knowledge representation formats, (3) the role of cognitive methodology to evaluate and assist in the evolutionary development process, (4) development of an architecture and (5) design principles for sharable medical knowledge representation formats, and (6) a process for standardization of a CIG modeling language.
Mor Peleg, Aziz A. Boxwala, Samson W. Tu, Qing T. Zeng, Omolola Ogunyemi, Dongwen Wang, Vimla L. Patel, Robert A. Greenes, Edward H. Shortliffe
J. Am. Medical Informatics Assoc.5
2004 GLIF3: a representation format for sharable computer-interpretable clinical practice guidelines
Aziz A. Boxwala, Mor Peleg, Samson W. Tu, Omolola Ogunyemi, Qing T. Zeng, Dongwen Wang, Vimla L. Patel, Robert A. Greenes, Edward H. Shortliffe
J. Biomed. Informatics4
2004 Design and implementation of the GLIF3 guideline execution engine
Dongwen Wang, Mor Peleg, Samson W. Tu, Aziz A. Boxwala, Omolola Ogunyemi, Qing T. Zeng, Robert A. Greenes, Vimla L. Patel, Edward H. Shortliffe
J. Biomed. Informatics5
2003 GELLO: An Object-Oriented Query and Expression Language for Clinical Decision Support: AMIA 2003 Open Source Expo
Margarita Sordo, Omolola Ogunyemi, Aziz A. Boxwala, Robert A. Greenes
AMIA2
2002 Using New Object Oriented Expression Language (GELLO) to Encode Arden Syntax's Medical Logic Modules
Yaron Denekamp, Omolola Ogunyemi, Aziz A. Boxwala, Robert A. Greenes
AMIA2
2002 Health Information Retrieval Tool (HIRT)
Mra Thinzar Nyun, Omolola Ogunyemi, Qing T. Zeng
AMIA2
2002 Research Paper: Combining Geometric and Probabilistic Reasoning for Computer-based Penetrating-Trauma Assessment
abstract
OBJECTIVE: To ascertain whether three-dimensional geometric and probabilistic reasoning methods can be successfully combined for computer-based assessment of conditions arising from ballistic penetrating trauma to the chest and abdomen. DESIGN: The authors created a computer system (TraumaSCAN) that integrates three-dimensional geometric reasoning about anatomic likelihood of injury with probabilistic reasoning about injury consequences using Bayesian networks. Preliminary evaluation of TraumaSCAN was performed via a retrospective study testing performance of the system on data from 26 cases of actual gunshot wounds. MEASUREMENTS: Areas under the receiver operating characteristics (ROC) curve were calculated for each condition modeled in TraumaSCAN that was present in the 26 cases. The comprehensiveness and relevance of the TraumaSCAN diagnosis for the 26 cases were used to assess the overall performance of the system. To test the ability of TraumaSCAN to handle limited findings, these measurements were calculated both with and without input of observed findings into the Bayesian network. RESULTS: For the 11 conditions assessed, the worst area under the ROC curve with no observed findings input into the Bayesian network was 0.542 (95% CI, 0.146-0.937), the median was 0.883 (95% CI, 0.713-1.000), and the best was 1.00 (95% CI, 1.000-1.000). The worst area under the ROC curve with all observed findings input into the Bayesian network was 0.835 (95% CI, 0.602-1.000), the median was 0.941 (95% CI, 0.827-1.000), and the best was 0.992 (95% CI, 0.965-1.000). A comparison of the areas under the curve obtained with and without input of observed findings into the Bayesian network showed that there were significant differences for 2 of the 11 conditions assessed. CONCLUSION: A computer-based method that combines geometric and probabilistic reasoning shows promise as a tool for assessing ballistic penetrating trauma to the chest and abdomen.
Omolola Ogunyemi, John R. Clarke, Nachman Ash, Bonnie L. Webber
J. Am. Medical Informatics Assoc.1
2001 Finding appropriate clinical trials: evaluating encoded eligibility criteria with incomplete data
Nachman Ash, Omolola Ogunyemi, Qing T. Zeng, Lucila Ohno-Machado
AMIA2
2001 Using features of Arden Syntax with object-oriented medical data models for guideline modeling
Mor Peleg, Omolola Ogunyemi, Samson W. Tu, Aziz A. Boxwala, Qing T. Zeng, Robert A. Greenes, Edward H. Shortliffe
AMIA2
2001 Toward a Representation Format for Sharable Clinical Guidelines
Aziz A. Boxwala, Samson W. Tu, Mor Peleg, Qing T. Zeng, Omolola Ogunyemi, Robert A. Greenes, Edward H. Shortliffe, Vimla L. Patel
J. Biomed. Informatics5
2000 TraumaSCAN: assessing penetrating trauma with geometric and probabilistic reasoning
Omolola Ogunyemi, John R. Clarke, Bonnie L. Webber, Norman I. Badler
AMIA1
2000 GLIF3: the evolution of a guideline representation format
Mor Peleg, Aziz A. Boxwala, Omolola Ogunyemi, Qing T. Zeng, Samson W. Tu, Ronilda C. Lacson, Elmer V. Bernstam, Nachman Ash, Kris Mork, Lucila Ohno-Machado, Edward H. Shortliffe, Robert A. Greenes
AMIA3
2000 Using Bayesian Networks for Diagnostic Reasoning in Penetrating Injury Assessment
abstract
Describes a method for diagnostic reasoning under uncertainty that is used in TraumaSCAN, a computer-based system for assessing penetrating trauma. Uncertainty in assessing penetrating injuries arises from two different sources: the actual extent of damage associated with a particular injury mechanism may not be easily discernable, and there may be incomplete information about patient findings (signs, symptoms and test results) which provide clues about the extent of the injury. Bayesian networks are used in TraumaSCAN for diagnostic reasoning because they provide a mathematically sound means of making probabilistic inferences about the injury in the face of uncertainty. We also present a comparison of TraumaSCAN's results in assessing 26 actual gunshot wound cases with those of TraumAID, a validated rule-based expert system for the diagnosis and treatment of penetrating trauma.
Omolola Ogunyemi, John R. Clarke, Bonnie L. Webber
CBMS1
1998 Probabilistically Predicting Penetrating Injury for Decision Support
abstract
Examines an approach for integrating 3D structural reasoning, using computer models of the human anatomy, with diagnostic reasoning based on Bayesian networks in order to probabilistically predict injuries to anatomic structures from gunshot wounds. An interactive 3D graphical system has been created which allows the user to visualize different bullet path hypotheses and computes the probability that an anatomical structure associated with a given penetration path is injured. The probabilities derived are essential for mediating between structural reasoning and diagnostic reasoning.
Omolola Ogunyemi, Bonnie L. Webber, John R. Clarke
CBMS1
1997 Probabilistic predictions of penetrating injury to anatomic structures
Omolola Ogunyemi, Bonnie L. Webber, John R. Clarke
AMIA1