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Sean D. Murphy

dblp:71/4346 · DBLP profile ↗
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2ranked-venue papers
1as first author
1since 2021 · last 2023
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 2 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Computational science and engineering · 96% Bioinformatics and computational biology · 4%
Databases, data mining, and information retrieval
1 paper
Data integration and cleaning · 100%

Topics — the 5 heaviest of 6, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Computational science and engineering
computational reproducibility
0.712023
Renku: a platform for sustainable data science · NeurIPS 2023
Machine learning › Deep learning architectures and training
spiking neural network
0.011994
Model of a Biological Neuron as a Temporal Neural Network · NIPS 1994
Bioinformatics and computational biology
computational neuroscience
0.011994
Model of a Biological Neuron as a Temporal Neural Network · NIPS 1994
Bioinformatics and computational biology › computational neuroscience
neuron model
0.011994
Model of a Biological Neuron as a Temporal Neural Network · NIPS 1994
Integrated circuit design
VLSI design
0.011994
Model of a Biological Neuron as a Temporal Neural Network · NIPS 1994

Methods — techniques the papers use, named apart from their topics

reproducibility · 1.3provenance tracking · 1.3compartmental model · 0.0
YearPublicationVenuePosition
2023 Renku: a platform for sustainable data science
abstract
Data and code working together is fundamental to machine learning (ML), but the context around datasets and interactions between datasets and code are in general captured only rudimentarily. Context such as how the dataset was prepared and created, what source data were used, what code was used in processing, how the dataset evolved, and where it has been used and reused can provide much insight, but this information is often poorly documented. That is unfortunate since it makes datasets into black-boxes with potentially hidden characteristics that have downstream consequences. We argue that making dataset preparation more accessible and dataset usage easier to record and document would have significant benefits for the ML community: it would allow for greater diversity in datasets by inviting modification to published sources, simplify use of alternative datasets and, in doing so, make results more transparent and robust, while allowing for all contributions to be adequately credited. We present a platform, Renku, designed to support and encourage such sustainable development and use of data, datasets, and code, and we demonstrate its benefits through a few illustrative projects which span the spectrum from dataset creation to dataset consumption and showcasing.
Rok Roskar, Chandrasekhar Ramakrishnan, Michele Volpi, Fernando Pérez-Cruz, Lilian Gasser, Firat Özdemir, Patrick Paitz, Mohammad Alisafaee, Philipp Fischer 0004, Ralf Grubenmann, Eliza J. Harris, Tasko Olevski, Carl Remlinger, Luis Salamanca, Elisabet Capon Garcia, Lorenzo Cavazzi, Jakub Chrobasik, Darlin Cordoba Osnas, Alessandro Degano, Jimena Dupre, Wesley Johnson, Eike Kettner, Laura Kinkead, Sean D. Murphy, Flora Thiebaut, Olivier Verscheure
NeurIPS24
1994 Model of a Biological Neuron as a Temporal Neural Network
abstract
A biological neuron can be viewed as a device that maps a multidimen(cid:173) sional temporal event signal (dendritic postsynaptic activations) into a unidimensional temporal event signal (action potentials). We have designed a network, the Spatio-Temporal Event Mapping (STEM) architecture, which can learn to perform this mapping for arbitrary bio(cid:173) physical models of neurons. Such a network appropriately trained, called a STEM cell, can be used in place of a conventional compartmen(cid:173) tal model in simulations where only the transfer function is important, such as network simulations. The STEM cell offers advantages over compartmental models in terms of computational efficiency, analytical tractabili1ty, and as a framework for VLSI implementations of biologi(cid:173) cal neurons.
Sean D. Murphy, Edward W. Kairiss
NIPS1