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Rainer Pepperkok

dblp:77/6680 · DBLP profile ↗
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2ranked-venue papers
0as first author
1since 2021 · last 2021
0000-0002-9762-3583ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Medical and health informatics · 89% Bioinformatics and computational biology · 11%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Medical and health informatics
medical imaging
0.512021
BigDataProcessor2: a free and open-source Fiji plugin for inspection and processing of TB sized image data · Bioinform. 2021
Bioinformatics and computational biology › protein analysis › protein bioinformatics
protein annotation
0.012004
??Harvester??: a fast meta search engine of human protein resources · Bioinform. 2004
Bioinformatics and computational biology › data integration
database integration
0.012004
??Harvester??: a fast meta search engine of human protein resources · Bioinform. 2004

Methods — techniques the papers use, named apart from their topics

image processing · 0.5drift correction · 0.5chromatic correction · 0.5
YearPublicationVenuePosition
2021 BigDataProcessor2: a free and open-source Fiji plugin for inspection and processing of TB sized image data
abstract
SUMMARY: Modern bioimaging and related areas such as sensor technology have undergone tremendous development over the last few years. As a result, contemporary imaging techniques, particularly electron microscopy (EM) and light sheet microscopy, can frequently generate datasets attaining sizes of several terabytes (TB). As a consequence, even seemingly simple data operations such as cropping, chromatic- and drift-corrections and even visualisation, poses challenges when applied to thousands of time points or tiles. To address this we developed BigDataProcessor2-a Fiji plugin facilitating processing workflows for TB sized image datasets. AVAILABILITY AND IMPLEMENTATION: BigDataProcessor2 is available as a Fiji plugin via the BigDataProcessor update site. The application is implemented in Java and the code is publicly available on GitHub (https://github.com/bigdataprocessor/bigdataprocessor2). SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Christian Tischer 0001, Ashis Ravindran, Sabine Reither, Nicolas Chiaruttini, Rainer Pepperkok, Nils Norlin
Bioinform.5
2004 ??Harvester??: a fast meta search engine of human protein resources
abstract
SUMMARY: We have developed a Web-based tool named 'Harvester' that bulk-collects bioinformatic data on human proteins from various databases and prediction servers. The information on every single protein is assembled on a single HTML page as a combination of database screen-shots and plain text. A full text meta search engine, similar to Google trade mark, allows screening of the whole genome proteome for current protein functions and predictions in a few seconds. With Harvester it is now possible to compare and check the quality of different database entries and prediction algorithms on a single page. A feedback forum allows users to comment on Harvester and to report database inconsistencies. AVAILABILITY: The service is freely available to the academic community at http://harvester.embl.de.
Urban Liebel, Bjoern Kindler, Rainer Pepperkok
Bioinform.3