VLDB 2026 Research / reviewers in the wild / expert
Gozde Unal
dblp:78/3600 · also Gozde B. Unal, Gözde B. Ünal
· DBLP profile ↗
58ranked-venue papers
18as first author
13since 2021 · last 2026
0000-0001-5942-8966ORCID · verified
Domains — the database's venue-derived domains; a paper can count in several
Graphics, computer vision, multimedia, augmented reality and games · 33 · 13 first-author · 4 since 2021Applied, interdisciplinary, general and emerging computing · 21 · 3 first-author · 3 since 2021Artificial intelligence and machine learning · 19 · 5 first-author · 9 since 2021Human-computer interaction and ubiquitous computing · 1Theory of computation · 1
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | Disentanglement with factor quantized variational autoencodersabstractDisentangled representation learning aims to represent the underlying generative factors of a dataset in a latent representation independently of one another. In our work, we propose a discrete variational autoencoder (VAE) based model where the ground truth information about the generative factors are not provided to the model. We demonstrate the advantages of learning discrete representations over learning continuous representations in facilitating disentanglement. Furthermore, we propose incorporating an inductive bias into the model to further enhance disentanglement. Precisely, we propose scalar quantization of the latent variables in a latent representation with scalar values from a global codebook, and we add a total correlation term to the optimization as an inductive bias. Our method called FactorQVAE combines optimization based disentanglement approaches with discrete representation learning, and it outperforms the former disentanglement methods in terms of two disentanglement metrics (DCI and InfoMEC) while improving the reconstruction performance. Our code can be found at https://github.com/ituvisionlab/FactorQVAE . Gulcin Baykal, Melih Kandemir, Gozde Unal |
Neurocomputing | 3 |
| 2026 | BONBID-HIE 2023: Lesion Segmentation Challenge in BOston Neonatal Brain Injury Data for Hypoxic Ischemic EncephalopathyabstractHypoxic Ischemic Encephalopathy (HIE) represents a brain dysfunction, affecting approximately 1 to 5 per 1000 full-term neonates. The precise delineation and segmentation of HIE-related lesions in neonatal brain Magnetic Resonance Images (MRI) are pivotal in advancing outcome predictions, identifying patients at high risk, elucidating neurological manifestations, and assessing treatment efficacies. Despite its importance, the development of algorithms for segmenting HIE lesions from MRI volumes has been impeded by data scarcity. Addressing this critical gap, we organized the first BONBID-HIE challenge with diffusion MRI data (Apparent Diffusion Coefficient (ADC) maps) for HIE lesion segmentation, in conjunction with the MICCAI 2023. Totally 14 algorithms were submitted, employing a gamut of cutting-edge automatic machine-learning-based segmentation algorithms. Our comprehensive analysis of HIE lesion segmentation and submitted algorithms facilitates an in-depth evaluation of the current technological zenith, outlines directions for future advancements, and highlights persistent hurdles. To foster ongoing research and benchmarking, the annotated HIE dataset, developed algorithm dockers, and unified evaluation codes are accessible through a dedicated online platform (https://bonbid-hie2023.grand-challenge.org). Rina Bao, Anna N. Foster, Ya'Nan Song, Rutvi Vyas, Ankush Kesri, Imad Eddine Toubal, Elham Soltanikazemi, Gani Rahmon, Taci Kucukpinar, Mohamed Almansour, Mai-Lan Ho, Kannappan Palaniappan, Dean Ninalga, Chiranjeewee Prasad Koirala, Sovesh Mohapatra, Gottfried Schlaug, Marek Wodzinski, Henning Müller, David Gage Ellis, Michele R. Aizenberg, M. Arda Aydin, Elvin Abdinli, Gozde Unal, Nazanin Tahmasebi, Kumaradevan Punithakumar, Tian Song 0001, Sara V. Bates, Randy Hirschtick, Patricia Ellen Grant, Yangming Ou |
IEEE Trans. Medical Imaging | 23 |
| 2025 | UniMLR: Modeling Implicit Class Significance for Multi-Label RankingabstractExisting multi-label ranking (MLR) frameworks only exploit information deduced from the bipartition of labels into positive and negative sets. Therefore, they do not benefit from ranking among positive labels, which is the novel MLR approach we introduce in this paper. We propose UniMLR, a new MLR paradigm that models implicit class relevance/significance values as probability distributions using the ranking among positive labels, rather than treating them as equally important. This approach unifies ranking and classification tasks associated with MLR. Additionally, we address the challenges of scarcity and annotation bias in MLR datasets by introducing eight synthetic datasets (Ranked MNISTs) generated with varying significance-determining factors, providing an enriched and controllable experimental environment. We statistically demonstrate that our method accurately learns a representation of the positive rank order, which is consistent with the ground truth and proportional to the underlying significance values. Finally, we conduct comprehensive empirical experiments on both real-world and synthetic datasets, demonstrating the value of our proposed framework. Code is available at https://github.com/MrGranddy/UniMLR. Vahit Bugra Yesilkaynak, Emine Dari, Alican Mertan, Gozde Unal |
ECAI | 4 |
| 2024 | ∊-Mesh Attack: A Surface-based Adversarial Point Cloud Attack for Facial Expression RecognitionabstractPoint clouds and meshes are widely used 3D data structures for many computer vision applications. While the meshes represent the surfaces of an object, point cloud represents sampled points from the surface which is also the output of modern sensors such as LiDAR and RGB-D cameras. Due to the wide application area of point clouds and the recent advancements in deep neural networks, studies focusing on robust classification of the 3D point cloud data emerged. To evaluate the robustness of deep classifier networks, a common method is to use adversarial attacks where the gradient direction is followed to change the input slightly. The previous studies on adversarial attacks are generally evaluated on point clouds of daily objects. However, considering 3D faces, these adversarial attacks tend to affect the person's facial structure more than the desired amount and cause malformation. Specifically for facial expressions, even a small adversarial attack can have a significant effect on the face structure. In this paper, we suggest an adversarial attack called$\epsilon$-Mesh Attack, which operates on point cloud data via limiting perturbations to be on the mesh surface. We also parameterize our attack by$\epsilon$to scale the perturbation mesh. Our surface-based attack has tighter perturbation bounds compared to$L_{2}$and$L_{\infty}$norm bounded attacks that operate on unit-ball. Even though our method has additional constraints, our experiments on CoMA, Bosphorus and FaceWarehouse datasets show that$\epsilon$-Mesh Attack (Perpendicular) successfully confuses trained DGCNN and PointNet models 99.72% and 97.06% of the time, with indistinguishable facial deformations. The code is available at https://github.com/batuceng/e-mesh-attack. Batuhan Cengiz, Mert Gulsen, Yusuf Huseyin Sahin, Gozde Unal |
FG | 4 |
| 2024 | A Study Regarding Machine Unlearning on Facial Attribute DataabstractMachine learning (ML) models require large amounts of data and many of the stored data is used to train ML models. However, the ML models learn insights about the data during their training and this raises privacy concerns of the individuals regarding personal data. These concerns led to the introduction of legislation focusing on the “right to be forgotten” and machine unlearning has emerged to address these concerns. Although machine unlearning studies focus on data privacy issues generally, machine unlearning is also used to fix the mistrained machine learning models as well. Mistraining may occur due to problems in the data such as mislabeling. Machine unlearning can solve this problem by discarding the information regarding the problematic data. In this study, the effects of machine unlearning on facial attribute classification are discovered. Experimental results on CelebA dataset show the effectiveness of machine unlearning methods. The code repository can be accessed at https://github.com/ituvisionlab/face-attribute-unlearning. Emircan Gündogdu, Altay Unal, Gozde Unal |
FG | 3 |
| 2024 | EdVAE: Mitigating codebook collapse with evidential discrete variational autoencoders
Gulcin Baykal, Melih Kandemir, Gozde Unal |
Pattern Recognit. | 3 |
| 2023 | ProtoDiffusion: Classifier-Free Diffusion Guidance with Prototype Learning
Gulcin Baykal, Halil Faruk Karagoz, Taha Binhuraib, Gozde Unal |
ACML | 4 |
| 2022 | GAN-based Intrinsic Exploration for Sample Efficient Reinforcement LearningabstractIn this study, we address the problem of efficient exploration in reinforcement learning. Most common exploration approaches depend on random action selection, however these approaches do not work well in environments with sparse or no rewards. We propose Generative Adversarial Network-based Intrinsic Reward Module that learns the distribution of the observed states and sends an intrinsic reward that is computed as high for states that are out of distribution, in order to lead agent to unexplored states. We evaluate our approach in Super Mario Bros for a no reward setting and in Montezuma's Revenge for a sparse reward setting and show that our approach is indeed capable of exploring efficiently. We discuss a few weaknesses and conclude by discussing future works. Dogay Kamar, N. Kemal Ure, Gozde Unal |
ICAART (2) | 3 |
| 2022 | Evidential Turing Processes
Melih Kandemir, Abdullah Akgül, Manuel Haußmann, Gozde Unal |
ICLR | 4 |
| 2022 | ODFNet: Using orientation distribution functions to characterize 3D point clouds
Yusuf Huseyin Sahin, Alican Mertan, Gozde Unal |
Comput. Graph. | 3 |
| 2022 | Exploring DeshuffleGANs in Self-Supervised Generative Adversarial Networks
Gulcin Baykal, Furkan Ozcelik, Gozde Unal |
Pattern Recognit. | 3 |
| 2021 | CHAOS Challenge - combined (CT-MR) healthy abdominal organ segmentation
A. Emre Kavur, Naciye Sinem Gezer, Mustafa Baris, Sinem Aslan, Pierre-Henri Conze, Vladimir Groza, Duc Duy Pham, Soumick Chatterjee, Philipp Ernst, Savas Özkan, Bora Baydar, Dmitry A. Lachinov, Shuo Han 0001, Josef Pauli, Fabian Isensee, Matthias Perkonigg, Rachana Sathish, Ronnie Rajan, Debdoot Sheet, Gurbandurdy Dovletov, Oliver Speck, Andreas Nürnberger, Klaus H. Maier-Hein, Gozde Bozdagi Akar, Gozde Unal, Oguz Dicle, M. Alper Selver |
Medical Image Anal. | 25 |
| 2021 | Rethinking CNN-Based Pansharpening: Guided Colorization of Panchromatic Images via GANsabstractConvolutional neural network (CNN)-based approaches have shown promising results in the pansharpening of the satellite images in recent years. However, they still exhibit limitations in producing high-quality pansharpening outputs. To that end, we propose a new self-supervised learning framework, where we treat pansharpening as a colorization problem, which brings an entirely novel perspective and solution to the problem compared with the existing methods that base their solution solely on producing a super-resolution version of the multispectral image. Whereas the CNN-based methods provide a reduced-resolution panchromatic image as the input to their model along with the reduced-resolution multispectral images and, hence, learn to increase their resolution together, we instead provide the grayscale transformed multispectral image as the input and train our model to learn the colorization of the grayscale input. We further address the fixed downscale ratio assumption during training, which does not generalize well to the full-resolution scenario. We introduce a noise injection into the training by randomly varying the downsampling ratios. Those two critical changes, along with the addition of adversarial training in the proposed PanColorization generative adversarial network (PanColorGAN) framework, help overcome the spatial-detail loss and blur problems that are observed in CNN-based pansharpening. The proposed approach outperforms the previous CNN-based and traditional methods, as demonstrated in our experiments. Furkan Ozcelik, Ugur Alganci, Elif Sertel, Gozde Unal |
IEEE Trans. Geosci. Remote. Sens. | 4 |
| 2020 | A New Distributional Ranking Loss With Uncertainty: Illustrated in Relative Depth EstimationabstractWe propose a new approach for the problem of relative depth estimation from a single image. Instead of directly regressing over depth scores, we formulate the problem as estimation of a probability distribution over depth and aim to learn the parameters of the distributions which maximize the likelihood of the given data. To train our model, we propose a new ranking loss, Distributional Loss, which tries to increase the probability of farther pixel's depth being greater than the closer pixel's depth. Our proposed approach allows our model to output confidence in its estimation in the form of standard deviation of the distribution. We achieve state of the art results against a number of baselines while providing confidence in our estimations. Our analysis show that estimated confidence is actually a good indicator of accuracy. We investigate the usage of confidence information in a downstream task of metric depth estimation, to increase its performance. Alican Mertan, Yusuf Huseyin Sahin, Damien Jade Duff, Gozde Unal |
3DV | 4 |
| 2020 | Deshufflegan: A Self-Supervised Gan to Improve Structure LearningabstractGenerative Adversarial Networks (GANs) triggered an increased interest in problem of image generation due to their improved output image quality and versatility for expansion towards new methods. Numerous GAN-based works attempt to improve generation by architectural and loss-based extensions. We argue that one of the crucial points to improve the GAN performance in terms of realism and similarity to the original data distribution is to be able to provide the model with a capability to learn the spatial structure in data. To that end, we propose the DeshuffleGAN to enhance the learning of the discriminator and the generator, via a self-supervision approach. Specifically, we introduce a deshuffling task that solves a puzzle of randomly shuffled image tiles, which in turn helps the DeshuffleGAN learn to increase its expressive capacity for spatial structure and realistic appearance. We provide experimental evidence for the performance improvement in generated images, compared to the baseline methods, which is consistently observed over two different datasets. Gulcin Baykal, Gozde Unal |
ICIP | 2 |
| 2018 | Neighborhood resolved fiber orientation distributions (NRFOD) in automatic labeling of white matter fiber pathways
Devran Ugurlu, Zeynep Firat, Ugur Türe, Gozde Unal |
Medical Image Anal. | 4 |
| 2017 | The 19th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2016)
Sébastien Ourselin, Mert R. Sabuncu, William M. Wells III, Leo Joskowicz, Gozde Unal, Andreas K. Maier |
Medical Image Anal. | 5 |
| 2016 | Vessel Orientation Constrained Quantitative Susceptibility Mapping (QSM) ReconstructionabstractQSM is used to estimate the underlying tissue magnetic susceptibility and oxygen saturation in veins. This paper presents vessel orientation as a new regularization term to improve the accuracy of $$l_1$$ regularized QSM reconstruction in cerebral veins. For that purpose, the vessel tree is first extracted from an initial QSM reconstruction. In a second step, the vascular geometric prior is incorporated through an orthogonality constraint into the QSM reconstruction. Using a multi-orientation QSM acquisition as gold standard, we show that the QSM reconstruction obtained with the vessel anatomy prior provides up to 40 % RMSE reduction relative to the baseline $$l_1$$ regularizer approach. We also demonstrate in vivo OEF maps along venous veins based on segmentations from QSM. The utility of the proposed method is further supported by inclusion of a separate MRI venography scan to introduce more detailed vessel orientation information into the reconstruction, which provides significant improvement in vessel conspicuity. Suheyla Cetin, Berkin Bilgic, Audrey P. Fan, Samantha J. Holdsworth, Gozde Unal |
MICCAI (3) | 5 |
| 2016 | Landmarks inside the shape: Shape matching using image descriptors
Riza Alp Güler, Sibel Tari, Gozde Unal |
Pattern Recognit. | 3 |
| 2015 | Elucidating Intravoxel Geometry in Diffusion-MRI: Asymmetric Orientation Distribution Functions (AODFs) Revealed by a Cone Model
Suheyla Cetin, Evren Özarslan, Gozde Unal |
MICCAI (1) | 3 |
| 2015 | A Higher-Order Tensor Vessel Tractography for Segmentation of Vascular StructuresabstractA new vascular structure segmentation method, which is based on a cylindrical flux-based higher order tensor (HOT), is presented. On a vessel structure, the HOT naturally models branching points, which create challenges for vessel segmentation algorithms. In a general linear HOT model embedded in 3D, one has to work with an even order tensor due to an enforced antipodal-symmetry on the unit sphere. However, in scenarios such as in a bifurcation, the antipodally-symmetric tensor embedded in 3D will not be useful. In order to overcome that limitation, we embed the tensor in 4D and obtain a structure that can model asymmetric junction scenarios. During construction of a higher order tensor (e.g. third or fourth order) in 4D, the orientation vectors lie on the unit 3-sphere, in contrast to the unit 2-sphere in 3D tensor modeling. This 4D tensor is exploited in a seed-based vessel segmentation algorithm, where the principal directions of the 4D HOT is obtained by decomposition, and used in a HOT tractography approach. We demonstrate quantitative validation of the proposed algorithm on both synthetic complex tubular structures as well as real cerebral vasculature in Magnetic Resonance Angiography (MRA) datasets and coronary arteries from Computed Tomography Angiography (CTA) volumes. Suheyla Cetin, Gozde Unal |
IEEE Trans. Medical Imaging | 2 |
| 2015 | The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)abstractIn this paper we report the set-up and results of the Multimodal Brain Tumor Image Segmentation Benchmark (BRATS) organized in conjunction with the MICCAI 2012 and 2013 conferences. Twenty state-of-the-art tumor segmentation algorithms were applied to a set of 65 multi-contrast MR scans of low- and high-grade glioma patients-manually annotated by up to four raters-and to 65 comparable scans generated using tumor image simulation software. Quantitative evaluations revealed considerable disagreement between the human raters in segmenting various tumor sub-regions (Dice scores in the range 74%-85%), illustrating the difficulty of this task. We found that different algorithms worked best for different sub-regions (reaching performance comparable to human inter-rater variability), but that no single algorithm ranked in the top for all sub-regions simultaneously. Fusing several good algorithms using a hierarchical majority vote yielded segmentations that consistently ranked above all individual algorithms, indicating remaining opportunities for further methodological improvements. The BRATS image data and manual annotations continue to be publicly available through an online evaluation system as an ongoing benchmarking resource. Bjoern Menze, András Jakab, Stefan Bauer, Jayashree Kalpathy-Cramer, Keyvan Farahani, Justin S. Kirby, Yuliya Burren, Nicole Porz, Johannes Slotboom, Roland Wiest, Levente Lanczi, Elizabeth R. Gerstner, Marc-André Weber, Tal Arbel, Brian B. Avants, Nicholas Ayache, Patricia Buendia, D. Louis Collins, Nicolas Cordier, Jason J. Corso, Antonio Criminisi, Tilak Das, Hervé Delingette, Çagatay Demiralp, Christopher R. Durst, Michel Dojat, Senan Doyle, Joana Festa, Florence Forbes, Ezequiel Geremia, Ben Glocker, Polina Golland, Xiaotao Guo, Andac Hamamci, Khan M. Iftekharuddin, Raj Jena, Nigel M. John, Ender Konukoglu, Danial Lashkari, José Antonio Mariz, Raphael Meier, Sérgio Pereira, Doina Precup, Stephen J. Price, Tammy Riklin-Raviv, Syed M. S. Reza, Michael T. Ryan, Duygu Sarikaya, Lawrence H. Schwartz, Hoo-Chang Shin, Jamie Shotton, Carlos A. Silva 0002, Nuno J. Sousa, Nagesh K. Subbanna, Gábor Székely, Thomas J. Taylor, Owen M. Thomas, Nicholas J. Tustison, Gozde Unal, Flor Vasseur, Max Wintermark, Dong Hye Ye, Liang Zhao 0018, Binsheng Zhao, Darko Zikic, Marcel Prastawa, Mauricio Reyes 0001, Koenraad Van Leemput |
IEEE Trans. Medical Imaging | 59 |
| 2014 | Screened Poisson Hyperfields for Shape CodingabstractWe present a novel perspective on shape characterization using the screened Poisson equation. We discuss that the effect of the screening parameter is a change of measure of the underlying metric space. Screening also indicates a conditioned random walker biased by the choice of measure. A continuum of shape fields is created by varying the screening parameter or, equivalently, the bias of the random walker. In addition to creating a regional encoding of the diffusion with a different bias, we further break down the influence of boundary interactions by considering a number of independent random walks, each emanating from a certain boundary point, whose superposition yields the screened Poisson field. Probing the screened Poisson equation from these two complementary perspectives leads to a high-dimensional hyperfield: a rich characterization of the shape that encodes global, local, interior, and boundary interactions. To extract particular shape information as needed in a compact way from the hyperfield, we apply various decompositions either to unveil parts of a shape or parts of a boundary or to create consistent mappings. The latter technique involves lower-dimensional embeddings, which we call screened Poisson encoding maps (SPEM). The expressive power of the SPEM is demonstrated via illustrative experiments as well as a quantitative shape retrieval experiment over a public benchmark database on which the SPEM method shows a high-ranking performance among the existing state-of-the-art shape retrieval methods. Riza Alp Güler, Sibel Tari, Gozde Unal |
SIAM J. Imaging Sci. | 3 |
| 2013 | Standardized evaluation framework for evaluating coronary artery stenosis detection, stenosis quantification and lumen segmentation algorithms in computed tomography angiography
Hortense A. Kirisli, Michiel Schaap, Coert Metz, A. S. Dharampal, W. B. Meijboom, S. L. Papadopoulou, A. Dedic, K. Nieman, Michiel A. de Graaf, M. F. L. Meijs, M. J. Cramer, Alexander Broersen, Suheyla Cetin, Abouzar Eslami, Leonardo Floréz-Valencia, Kuo-Lung Lor, Bogdan J. Matuszewski, Imen Melki, Brian Mohr, Ilkay Öksüz, Rahil Khurram Shahzad, Chunliang Wang, Pieter H. Kitslaar, Gozde Unal, Amin Katouzian, Maciej Orkisz, Chung-Ming Chen, Frédéric Precioso, Laurent Najman, S. Masood, Devrim Ünay, Lucas J. van Vliet, Rodrigo Moreno, Roman Goldenberg, Erald Vuçini, Gabriel P. Krestin, Wiro J. Niessen, Theo van Walsum |
Medical Image Anal. | 24 |
| 2013 | Vessel Tractography Using an Intensity Based Tensor Model With Branch DetectionabstractIn this paper, we present a tubular structure segmentation method that utilizes a second order tensor constructed from directional intensity measurements, which is inspired from diffusion tensor image (DTI) modeling. The constructed anisotropic tensor which is fit inside a vessel drives the segmentation analogously to a tractography approach in DTI. Our model is initialized at a single seed point and is capable of capturing whole vessel trees by an automatic branch detection algorithm developed in the same framework. The centerline of the vessel as well as its thickness is extracted. Performance results within the Rotterdam Coronary Artery Algorithm Evaluation framework are provided for comparison with existing techniques. 96.4% average overlap with ground truth delineated by experts is obtained in addition to other measures reported in the paper. Moreover, we demonstrate further quantitative results over synthetic vascular datasets, and we provide quantitative experiments for branch detection on patient computed tomography angiography (CTA) volumes, as well as qualitative evaluations on the same CTA datasets, from visual scores by a cardiologist expert. Suheyla Cetin, Ali Demir, Anthony J. Yezzi, Muzaffer Degertekin, Gozde Unal |
IEEE Trans. Medical Imaging | 5 |
| 2012 | Tumor-Cut: Segmentation of Brain Tumors on Contrast Enhanced MR Images for Radiosurgery ApplicationsabstractIn this paper, we present a fast and robust practical tool for segmentation of solid tumors with minimal user interaction to assist clinicians and researchers in radiosurgery planning and assessment of the response to the therapy. Particularly, a cellular automata (CA) based seeded tumor segmentation method on contrast enhanced T1 weighted magnetic resonance (MR) images, which standardizes the volume of interest (VOI) and seed selection, is proposed. First, we establish the connection of the CA-based segmentation to the graph-theoretic methods to show that the iterative CA framework solves the shortest path problem. In that regard, we modify the state transition function of the CA to calculate the exact shortest path solution. Furthermore, a sensitivity parameter is introduced to adapt to the heterogeneous tumor segmentation problem, and an implicit level set surface is evolved on a tumor probability map constructed from CA states to impose spatial smoothness. Sufficient information to initialize the algorithm is gathered from the user simply by a line drawn on the maximum diameter of the tumor, in line with the clinical practice. Furthermore, an algorithm based on CA is presented to differentiate necrotic and enhancing tumor tissue content, which gains importance for a detailed assessment of radiation therapy response. Validation studies on both clinical and synthetic brain tumor datasets demonstrate 80%-90% overlap performance of the proposed algorithm with an emphasis on less sensitivity to seed initialization, robustness with respect to different and heterogeneous tumor types, and its efficiency in terms of computation time. Andac Hamamci, Nadir Kucuk, Kutlay Karaman, Kayihan Engin, Gozde Unal |
IEEE Trans. Medical Imaging | 5 |
| 2011 | A Sobolev-type metric for polar active contoursabstractPolar object representations have proven to be a powerful shape model for many medical as well as other computer vision applications, such as interactive image segmentation or tracking. Inspired by recent work on Sobolev active contours we derive a Sobolev-type function space for polar curves. This so-called polar space is endowed with a metric that allows us to favor origin translations and scale changes over smooth deformations of the curve. Moreover, the resulting curve flow inherits the coarse-to-fine behavior of Sobolev active contours and is thus very robust to local minima. These properties make the resulting polar active contours a powerful segmentation tool for many medical applications, such as cross-sectional vessel segmentation, aneurysm analysis, or cell tracking. Maximilian Baust, Anthony J. Yezzi, Gozde Unal, Nassir Navab |
CVPR | 3 |
| 2011 | Generating shapes by analogies: An application to hearing aid design
Gozde Unal, Delphine Nain, Gregory Slabaugh, Tong Fang |
Comput. Aided Des. | 1 |
| 2011 | Plant Image Retrieval Using Color, Shape and Texture FeaturesabstractWe present a content-based image retrieval system for plant image retrieval, intended especially for the house plant identification problem. A plant image consists of a collection of overlapping leaves and possibly flowers, which makes the problem challenging. We studied the suitability of various well-known color, shape and texture features for this problem, as well as introducing some new texture matching techniques and shape features. Feature extraction is applied after segmenting the plant region from the background using the max-flow min-cut technique. Results on a database of 380 plant images belonging to 78 different types of plants show promise of the proposed new techniques and the overall system: in 55% of the queries, the correct plant image is retrieved among the top-15 results. Furthermore, the accuracy goes up to 73% when a 132-image subset of well-segmented plant images are considered. Hanife Kebapci, Berrin A. Yanikoglu, Gozde Unal |
Comput. J. | 3 |
| 2010 | Cellular Automata Segmentation of Brain Tumors on Post Contrast MR Images
Andac Hamamci, Gozde Unal, Nadir Kucuk, Kayihan Engin |
MICCAI (3) | 2 |
| 2010 | 3D ball skinning using PDEs for generation of smooth tubular surfaces
Gregory Slabaugh, Brian Whited, Jarek Rossignac, Tong Fang, Gozde Unal |
Comput. Aided Des. | 5 |
| 2010 | Efficient Classification of Scanned Media Using Spatial StatisticsabstractPhotography, lithography, xerography, and inkjet printing are the dominant technologies for color printing. Images produced on these "different media" are often scanned either for the purpose of copying or creating an electronic representation. For an improved color calibration during scanning, a media identification from the scanned image data is desirable. In this paper, we propose an efficient algorithm for automated classification of input media into four major classes corresponding to photographic, lithographic, xerographic and inkjet. Our technique exploits the strong correlation between the type of input media and the spatial statistics of corresponding images, which are observed in the scanned images. We adopt ideas from spatial statistics literature, and design two spatial statistical measures of dispersion and periodicity, which are computed over spatial point patterns generated from blocks of the scanned image, and whose distributions provide the features for making a decision. We utilize extensive training data and determined well separated decision regions to classify the input media. We validate and tested our classification technique results over an independent extensive data set. The results demonstrate that the proposed method is able to distinguish between the different media with high reliability. Gozde Unal, Gaurav Sharma 0001, Reiner Eschbach |
Int. J. Pattern Recognit. Artif. Intell. | 1 |
| 2010 | Coupled Nonparametric Shape and Moment-Based Intershape Pose Priors for Multiple Basal Ganglia Structure SegmentationabstractThis paper presents a new active contour-based, statistical method for simultaneous volumetric segmentation of multiple subcortical structures in the brain. In biological tissues, such as the human brain, neighboring structures exhibit co-dependencies which can aid in segmentation, if properly analyzed and modeled. Motivated by this observation, we formulate the segmentation problem as a maximum a posteriori estimation problem, in which we incorporate statistical prior models on the shapes and intershape (relative) poses of the structures of interest. This provides a principled mechanism to bring high level information about the shapes and the relationships of anatomical structures into the segmentation problem. For learning the prior densities we use a nonparametric multivariate kernel density estimation framework. We combine these priors with data in a variational framework and develop an active contour-based iterative segmentation algorithm. We test our method on the problem of volumetric segmentation of basal ganglia structures in magnetic resonance images. We present a set of 2-D and 3-D experiments as well as a quantitative performance analysis. In addition, we perform a comparison to several existent segmentation methods and demonstrate the improvements provided by our approach in terms of segmentation accuracy. Mustafa Gökhan Uzunbas, Octavian Soldea, Devrim Ünay, Mert Cetin, Gozde Unal, Aytül Erçil, Ahmet Ekin |
IEEE Trans. Medical Imaging | 5 |
| 2009 | A New 3-D Automated Computational Method to Evaluate In-Stent Neointimal Hyperplasia in In-Vivo Intravascular Optical Coherence Tomography Pullbacks
Serhan Gurmeric, Gözde Gül Sahin, Stephane G. Carlier, Gozde Unal |
MICCAI (1) | 4 |
| 2008 | Variational Skinning of an Ordered Set of Discrete 2D Balls
Gregory Slabaugh, Gozde Unal, Tong Fang, Jarek Rossignac, Brian Whited |
GMP | 2 |
| 2008 | Customized Design of Hearing Aids Using Statistical Shape Learning
Gozde Unal, Delphine Nain, Gregory Slabaugh, Tong Fang |
MICCAI (1) | 1 |
| 2008 | Shape-Driven Segmentation of the Arterial Wall in Intravascular Ultrasound ImagesabstractSegmentation of arterial wall boundaries from intravascular images is an important problem for many applications in the study of plaque characteristics, mechanical properties of the arterial wall, its 3-D reconstruction, and its measurements such as lumen size, lumen radius, and wall radius. We present a shape-driven approach to segmentation of the arterial wall from intravascular ultrasound images in the rectangular domain. In a properly built shape space using training data, we constrain the lumen and media-adventitia contours to a smooth, closed geometry, which increases the segmentation quality without any tradeoff with a regularizer term. In addition to a shape prior, we utilize an intensity prior through a nonparametric probability-density-based image energy, with global image measurements rather than pointwise measurements used in previous methods. Furthermore, a detection step is included to address the challenges introduced to the segmentation process by side branches and calcifications. All these features greatly enhance our segmentation method. The tests of our algorithm on a large dataset demonstrate the effectiveness of our approach. Gozde Unal, Susann Bucher, Stephane G. Carlier, Gregory Slabaugh, Tong Fang, Kaoru Tanaka |
IEEE Trans. Inf. Technol. Biomed. | 1 |
| 2008 | Guest Editorial Introduction to the Special Section on Computer Vision for Intravascular and Intracardiac ImagingabstractThe ten papers in this special section focus on computer vision for intravascular and intracardiac imaging. The papers are summarized here. Gozde Unal, Gregory Slabaugh, Ioannis A. Kakadiaris, Allen R. Tannenbaum |
IEEE Trans. Inf. Technol. Biomed. | 1 |
| 2007 | A Variational Approach to the Evolution of Radial Basis Functions for Image SegmentationabstractIn this paper we derive differential equations for evolving radial basis functions (RBFs) to solve segmentation problems. The differential equations result from applying variational calculus to energy functionals designed for image segmentation. Our methodology supports evolution of all parameters of each RBF, including its position, weight, orientation, and anisotropy, if present. Our framework is general and can be applied to numerous RBF interpolants. The resulting approach retains some of the ideal features of implicit active contours, like topological adaptivity, while requiring low storage overhead due to the sparsity of our representation, which is an unstructured list of RBFs. We present the theory behind our technique and demonstrate its usefulness for image segmentation. Gregory Slabaugh, Huong Quynh Dinh, Gozde Unal |
CVPR | 3 |
| 2007 | Variational Guidewire Tracking Using Phase Congruency
Gregory Slabaugh, Koon Kong, Gozde Unal, Tong Fang |
MICCAI (2) | 3 |
| 2007 | An information-theoretic detector based scheme for registration of speckled medical imagesabstractSeveral studies dealt with medical ultrasound registration. Their similarity metrics relied on pixel-to-pixel intensity comparisons. Hence, they are not well suited to the case of speckled images. To better handle the speckle noise, our previous work proposed an information-theoretic feature detector-based registration approach. This work aims to extend it to the cases where the image speckle model is Rayleigh or normalized Fisher-Tippett distributed. Using speckle modeling based on these distributions, a speckle-speci.c informationtheoretic feature detector is constructed and applied to provide feature images. Those feature images are then registered using differential equations, the solution of which provides a transformation to bring the images into alignment. Compared to standard gradient-based techniques, the experimental results demonstrate the effectiveness of our method, particularly for low contrast ultrasound images. Zhe Wendy Wang, Gregory Slabaugh, Gozde Unal, MengChu Zhou, Tong Fang |
SMC | 3 |
| 2007 | A Variational Approach to Problems in Calibration of Multiple CamerasabstractThis paper addresses the problem of calibrating camera parameters using variational methods. One problem addressed is the severe lens distortion in low-cost cameras. For many computer vision algorithms aiming at reconstructing reliable representations of 3D scenes, the camera distortion effects will lead to inaccurate 3D reconstructions and geometrical measurements if not accounted for. A second problem is the color calibration problem caused by variations in camera responses that result in different color measurements and affects the algorithms that depend on these measurements. We also address the extrinsic camera calibration that estimates relative poses and orientations of multiple cameras in the system and the intrinsic camera calibration that estimates focal lengths and the skew parameters of the cameras. To address these calibration problems, we present multiview stereo techniques based on variational methods that utilize partial and ordinary differential equations. Our approach can also be considered as a coordinated refinement of camera calibration parameters. To reduce computational complexity of such algorithms, we utilize prior knowledge on the calibration object, making a piecewise smooth surface assumption, and evolve the pose, orientation, and scale parameters of such a 3D model object without requiring a 2D feature extraction from camera views. We derive the evolution equations for the distortion coefficients, the color calibration parameters, the extrinsic and intrinsic parameters of the cameras, and present experimental results. Gozde Unal, Anthony J. Yezzi, Stefano Soatto, Gregory Slabaugh |
IEEE Trans. Pattern Anal. Mach. Intell. | 1 |
| 2006 | Ultrasound-Specific Segmentation via Decorrelation and Statistical Region-Based Active ContoursabstractSegmentation of ultrasound images is often a very challenging task due to speckle noise that contaminates the image. It is well known that speckle noise exhibits an asymmetric distribution as well as significant spatial correlation. Since these attributes can be difficult to model, many previous ultrasound segmentation methods oversimplify the problem by assuming that the noise is white and/or Gaussian, resulting in generic approaches that are actually more suitable to MR and X-ray segmentation than ultrasound. Unlike these methods, in this paper we present an ultrasound-specific segmentation approach that first decorrelates the image, and then performs segmentation on the whitened result using statistical region-based active contours. In particular, we design a gradient ascent flow that evolves the active contours to maximize a log likelihood functional based on the Fisher-Tippett distribution. We present experimental results that demonstrate the effectiveness of our method. Gregory Slabaugh, Gozde Unal, Tong Fang, Michael Wels |
CVPR (1) | 2 |
| 2006 | Semi-Automatic 3-D Segmentation of Anatomical Structures of Brain MRI Volumes using Graph CutsabstractWe present a semi-automatic segmentation technique of the anatomical structures of the brain: cerebrum, cerebellum, and brain stem. The method uses graph cuts segmentation with an anatomic template for initialization. First, a skull stripping procedure is applied to remove non-brain tissues. Then, the segmentation is done hierarchically by first, extracting first the cerebrum from the brain, and then from the remaining volume the cerebellum and the brain stem are separated. This method is fast and can separate different anatomical structures of the brain in spite of weak boundaries. We describe our approach and present experimental results demonstrating its usefulness. Huy-Nam Doan, Gregory Slabaugh, Gozde Unal, Tong Fang |
ICIP | 3 |
| 2006 | Semi-Automatic Lymph Node Segmentation in LN-MRIabstractAccurate staging of nodal cancer still relies on surgical exploration because many primary malignancies spread via lymphatic dissemination. The purpose of this study was to utilize nanoparticle-enhanced lymphotropic magnetic resonance imaging (LN-MRI) to explore semi-automated noninvasive nodal cancer staging. We present a joint image segmentation and registration approach, which makes use of the problem specific information to increase the robustness of the algorithm to noise and weak contrast often observed in medical imaging applications. The effectiveness of the approach is demonstrated with a given lymph node segmentation problem in post-contrast pelvic MRI sequences. Gozde Unal, Gregory Slabaugh, Andreas Ess, Anthony J. Yezzi, Tong Fang, Jason Tyan, Martin Requardt, Robert Krieg, Ravi T. Seethamraju, Mukesh Harisinghani, Ralph Weissleder |
ICIP | 1 |
| 2005 | Active Polyhedron: Surface Evolution Theory Applied to Deformable MeshesabstractThis paper presents a novel 3D deformable surface that we call an active polyhedron. Rooted in surface evolution theory, an active polyhedron is a polyhedral surface whose vertices deform to minimize a regional and/or boundary-based energy functional. Unlike continuous active surface models, the vertex motion of an active polyhedron is computed by integrating speed terms over polygonal faces of the surface. The resulting ordinary differential equations (ODEs) provide improved robustness to noise and allow for larger time steps compared to continuous active surfaces implemented with level set methods. We describe an electrostatic regularization technique that achieves global regularization while better preserving sharper local features. Experimental results demonstrate the effectiveness of an active polyhedron in solving segmentation problems as well as surface reconstruction from unorganized points. Gregory Slabaugh, Gozde Unal |
CVPR (2) | 2 |
| 2005 | Coupled PDEs for Non-Rigid Registration and SegmentationabstractIn this paper we present coupled partial differential equations (PDEs) for the problem of joint segmentation and registration. The registration component of the method estimates a deformation field between boundaries of two structures. The desired coupling comes from two PDEs that estimate a common surface through segmentation and its non-rigid registration with a target image. The solutions of these two PDEs both decrease the total energy of the surface, and therefore aid each other in finding a locally optimal solution. Our technique differs from recently popular joint segmentation and registration algorithms, all of which assume a rigid transformation among shapes. We present both the theory and results that demonstrate the effectiveness of the approach. Gozde Unal, Gregory Slabaugh |
CVPR (1) | 1 |
| 2005 | Graph cuts segmentation using an elliptical shape priorabstractWe present a graph cuts-based image segmentation technique that incorporates an elliptical shape prior. Inclusion of this shape constraint restricts the solution space of the segmentation result, increasing robustness to misleading information that results from noise, weak boundaries, and clutter. We argue that combining a shape prior with a graph cuts method suggests an iterative approach that updates an intermediate result to the desired solution. We first present the details of our method and then demonstrate its effectiveness in segmenting vessels and lymph nodes from pelvic magnetic resonance images, as well as human faces. Gregory Slabaugh, Gozde Unal |
ICIP (2) | 2 |
| 2005 | Fast incorporation of optical flow into active polygonsabstractIn this paper, we first reconsider, in a different light, the addition of a prediction step to active contour-based visual tracking using an optical flow and clarify the local computation of the latter along the boundaries of continuous active contours with appropriate regularizers. We subsequently detail our contribution of computing an optical flow-based prediction step directly from the parameters of an active polygon, and of exploiting it in object tracking. This is in contrast to an explicitly separate computation of the optical flow and its ad hoc application. It also provides an inherent regularization effect resulting from integrating measurements along polygon edges. As a result, we completely avoid the need of adding ad hoc regularizing terms to the optical flow computations, and the inevitably arbitrary associated weighting parameters. This direct integration of optical flow into the active polygon framework distinguishes this technique from most previous contour-based approaches, where regularization terms are theoretically, as well as practically, essential. The greater robustness and speed due to a reduced number of parameters of this technique are additional and appealing features. Gozde Unal, Hamid Krim, Anthony J. Yezzi |
IEEE Trans. Image Process. | 1 |
| 2004 | A Variational Approach to Problems in Calibration of Multiple Cameras
Gozde Unal, Anthony J. Yezzi |
CVPR (1) | 1 |
| 2004 | Efficient classification of scanned media using spatial statisticsabstractWe address the automatic classification of scanned input media in order to improve color calibration. Since scanner responses vary significantly according to the type of input, a media dependent color calibration for a scanner is desirable for accurately mapping scanner responses to a standard color space. To assist such media dependent calibration, we propose an efficient algorithm for automated classification of input media into four major classes corresponding to photographic, lithographic, xerographic and inkjet. Our technique exploits the strong correlation between the type of input medium and the spatial statistics of corresponding images, which may be observed in the scanned images. Adopting two spatial statistical measures of dispersion and periodicity and utilizing extensive training data, we determine well separated decision regions to classify the input medium with a high confidence level. Experimental results over an independent test data set validate the results. Gozde Unal, Gaurav Sharma 0001, Reiner Eschbach |
ICIP | 1 |
| 2004 | Information-Theoretic Active Polygons for Unsupervised Texture Segmentation
Gozde Unal, Anthony J. Yezzi, Hamid Krim |
Int. J. Comput. Vis. | 1 |
| 2003 | Algorithms for stochastic approximations of curvature flowsabstractCurvature flows have been extensively considered from a deterministic point of view. They have been shown to be useful for a number of applications including crystal growth, flame propagation, and computer vision. In some previous work G. Ben-Arous et al. (2002), we have described a random particle system, evolving on the discretized unit circle, whose profile converges toward the Gauss-Minkowsky transformation of solutions of curve shortening flows initiated by convex curves. The present note shows that this theory may be implemented as a new way of evolving curves and as a possible alternative to level set methods. Gozde Unal, Delphine Nain, Gérard Ben Arous, Nahum Shimkin, Allen R. Tannenbaum, Ofer Zeitouni |
ICIP (2) | 1 |
| 2002 | A vertex-based representation of objects in an imageabstractNovel polygon evolution models are introduced in this paper for capturing polygonal object boundaries in images which have one or more objects that have statistically different distributions on the intensity values. The key idea in our approach is to design evolution equations for vertices of a polygon that integrate both local and global image characteristics. Our method naturally provides an efficient representation of an object through a few number of vertices, which also leads to a significant amount of compression of image content. This methodology can effectively be used in the context of MPEG-7. We also propose usage of the Jensen-Shannon criterion as an information measure between the densities of regions of an image to capture more general statistical characteristics of the data. Gozde Unal, Hamid Krim, Anthony J. Yezzi |
ICIP (1) | 1 |
| 2002 | Stochastic differential equations and geometric flowsabstractIn previous years, curve evolution, applied to a single contour or to the level sets of an image via partial differential equations, has emerged as an important tool in image processing and computer vision. Curve evolution techniques have been utilized in problems such as image smoothing, segmentation, and shape analysis. We give a local stochastic interpretation of the basic curve smoothing equation, the so called geometric heat equation, and show that this evolution amounts to a tangential diffusion movement of the particles along the contour. Moreover, assuming that a priori information about the shapes of objects in an image is known, we present modifications of the geometric heat equation designed to preserve certain features in these shapes while removing noise. We also show how these new flows may be applied to smooth noisy curves without destroying their larger scale features, in contrast to the original geometric heat flow which tends to circularize any closed curve. Gozde Unal, Hamid Krim, Anthony J. Yezzi |
IEEE Trans. Image Process. | 1 |
| 2001 | Restoration of error-diffused images using projection onto convex setsabstractA novel inverse halftoning method is proposed to restore a continuous tone image from a given half-tone image. A set theoretic formulation is used where three sets are defined using the prior information about the problem. A new space-domain projection is introduced assuming the halftoning is performed using error diffusion, and the error diffusion filter kernel is known. The space-domain, frequency-domain, and space-scale domain projections are used alternately to obtain a feasible solution for the inverse halftoning problem which does not have a unique solution. Gozde Unal, A. Enis Çetin |
IEEE Trans. Image Process. | 1 |
| 2000 | A stochastic flow for feature extractionabstractOver the years the evolution of level sets of two-dimensional functions or images in time through a partial differential equation has emerged as an important tool in image processing. Curve evolution, which may be viewed as an evolution of a single level curve, has been applied to a wide variety of problems such as smoothing of shapes, shape analysis and shape recovery. We give a stochastic interpretation of the basic curve smoothing equation, the so called geometric heat equation, and show that this evolution amounts to a rotational diffusion movement of the particles along the contour. Moreover, assuming that a priori information about the orientation of objects to be preserved is known, we present new flows which amount to weighting the geometric heat equation nonlinearly as a function of the angle of the normal to the curve at each point. Gozde Unal, Hamid Krim, Anthony J. Yezzi |
ICASSP | 1 |
| 2000 | Feature-Preserving Flows: A Stochastic Differential Equation's ViewabstractEvolution equations have proven to be useful in tracking fine to coarse features in a single level curve and/or in an image. We give a stochastic insight to a specific evolution equation, namely the geometric heat equation, and subsequently use this insight to develop a class of feature-driven diffusions. A progressive smoothing along desired features of a level curve is aimed at overcoming effects of noisy environment during feature extraction and denoising applications. Gozde Unal, Hamid Krim, Anthony J. Yezzi |
ICIP | 1 |