In motion-robust magnetic resonance imaging (MRI), slice-to-volume reconstruction is critical for recovering anatomically consistent 3D brain volumes from 2D slices, especially under accelerated acquisitions or patient motion. However, this task remains challenging due to hierarchical structural disruptions. It includes local detail loss from k-space undersampling, global structural aliasing caused by motion, and volumetric anisotropy. Therefore, we propose a progressive refinement implicit neural representation (PR-INR) framework. Our PR-INR unifies motion correction, structural refinement, and volumetric synthesis within a geometry-aware coordinate space. Specifically, a motion-aware diffusion module is first employed to generate coarse volumetric reconstructions that suppress motion artifacts and preserve global anatomical structures. Then, we introduce an implicit detail restoration module that performs residual refinement by aligning spatial coordinates with visual features. It corrects local structures and enhances boundary precision. Further, a voxel continuous-aware representation module represents the image as a continuous function over 3D coordinates. It enables accurate inter-slice completion and high-frequency detail recovery. We evaluate PR-INR on five public MRI datasets under various motion conditions (3% and 5% displacement), undersampling rates (4x and 8x) and slice resolutions (scale = 5). Experimental results demonstrate that PR-INR outperforms state-of-the-art methods in both quantitative reconstruction metrics and visual quality. It further shows generalization and robustness across diverse unseen domains.

Cardiovascular health is vital to human well-being, and cardiac magnetic resonance (CMR) imaging is considered the clinical reference standard for diagnosing cardiovascular disease. However, its adoption is hindered by long scan times, complex contrasts, and inconsistent quality. While deep learning methods perform well on specific CMR imaging sequences, they often fail to generalize across modalities and sampling schemes. The lack of benchmarks for high-quality, fast CMR image reconstruction further limits technology comparison and adoption. The CMRxRecon2024 challenge, attracting over 200 teams from 18 countries, addressed these issues with two tasks: generalization to unseen modalities and robustness to diverse undersampling patterns. We introduced the largest public multi-modality CMR raw dataset, an open benchmarking platform, and shared code. Analysis of the best-performing solutions revealed that prompt-based adaptation and enhanced physics-driven consistency enabled strong cross-scenario performance. These findings establish principles for generalizable reconstruction models and advance clinically translatable AI in cardiovascular imaging.

Synthesizing high-quality images from low-field MRI holds significant potential. Low-field MRI is cheaper, more accessible, and safer, but suffers from low resolution and poor signal-to-noise ratio. This synthesis process can reduce reliance on costly acquisitions and expand data availability. However, synthesizing high-field MRI still suffers from a clinical fidelity gap. There is a need to preserve anatomical fidelity, enhance fine-grained structural details, and bridge domain gaps in image contrast. To address these issues, we propose a cyclic self-supervised diffusion (CSS-Diff) framework for high-field MRI synthesis from real low-field MRI data. Our core idea is to reformulate diffusion-based synthesis under a cycle-consistent constraint. It enforces anatomical preservation throughout the generative process rather than just relying on paired pixel-level supervision. The CSS-Diff framework further incorporates two novel processes. The slice-wise gap perception network aligns inter-slice inconsistencies via contrastive learning. The local structure correction network enhances local feature restoration through self-reconstruction of masked and perturbed patches. Extensive experiments on cross-field synthesis tasks demonstrate the effectiveness of our method, achieving state-of-the-art performance (e.g., $31.80~\pm ~2.70$ dB in PSNR, $0.943~\pm ~0.102$ in SSIM, and $0.0864~\pm ~0.0689$ in LPIPS). Beyond pixel-wise fidelity, our method also preserves fine-grained anatomical structures compared with the original low-field MRI (e.g., left cerebral white matter error drops from 12.1% to 2.1%, cortex from 4.2% to 3.7%). To conclude, our CSS-Diff can synthesize images that are both quantitatively reliable and anatomically consistent. The code is available at: https://github.com/ayanglab/CSS-Diff.

Magnetic resonance imaging (MRI) plays a pivotal role in modern medical diagnosis yet is often hindered by the long imaging time. MRI imaging can be accelerated through undersampling, but the introduced aliasing artifacts should be removed during image reconstruction. While deep learning reconstruction methods excel at image de-aliasing, they may yield suboptimal results when training sampling settings differ from those at the time of reconstruction. To decouple from specific sampling settings, we propose using synthetic data to generate a substantial training dataset and pre-train a 1D deep denoiser. We then integrate the trained deep denoiser into the iterative reconstruction process as a replacement for the approximation operator within the deep plug-and-play framework. In vivo results indicate that the proposed method exhibits robust and visually appealing image reconstruction when there is a mismatch between the training and reconstruction undersampling settings, such as different undersampling patterns and sampling rates.

Efficient collaboration between engineers and radiologists is important for image reconstruction algorithm development and image quality evaluation in magnetic resonance imaging (MRI). Here, we develop CloudBrain-ReconAI, an online cloud computing platform, for algorithm deployment, fast and blind reader study. This platform supports online image reconstruction using state-of-the-art artificial intelligence and compressed sensing algorithms with applications for fast imaging (Cartesian and non-Cartesian sampling) and high-resolution diffusion imaging. Through visiting the website, radiologists can easily score and mark images. Then, automatic statistical analysis will be provided.

Magnetic resonance imaging (MRI) is an essential diagnostic tool that suffers from prolonged scan time. To alleviate this limitation, advanced fast MRI technology attracts extensive research interests. Recent deep learning has shown its great potential in improving image quality and reconstruction speed. Faithful coil sensitivity estimation is vital for MRI reconstruction. However, most deep learning methods still rely on pre-estimated sensitivity maps and ignore their inaccuracy, resulting in the significant quality degradation of reconstructed images. In this work, we propose a Joint Deep Sensitivity estimation and Image reconstruction network, called JDSI. During the image artifacts removal, it gradually provides more faithful sensitivity maps with high-frequency information, leading to improved image reconstructions. To understand the behavior of the network, the mutual promotion of sensitivity estimation and image reconstruction is revealed through the visualization of network intermediate results. Results on in vivo datasets and radiologist reader study demonstrate that, for both calibration-based and calibrationless reconstruction, the proposed JDSI achieves the state-of-the-art performance visually and quantitatively, especially when the acceleration factor is high. Additionally, JDSI owns nice robustness to patients and autocalibration signals.

Deep learning has shown astonishing performance in accelerated magnetic resonance imaging (MRI). Most state-of-the-art deep learning reconstructions adopt the powerful convolutional neural network and perform 2D convolution since many magnetic resonance images or their corresponding k-space are in 2D. In this work, we present a new approach that explores the 1D convolution, making the deep network much easier to be trained and generalized. We further integrate the 1D convolution into the proposed deep network, named as One-dimensional Deep Low-rank and Sparse network (ODLS), which unrolls the iteration procedure of a low-rank and sparse reconstruction model. Extensive results on in vivo knee and brain datasets demonstrate that, the proposed ODLS is very suitable for the case of limited training subjects and provides improved reconstruction performance than state-of-the-art methods both visually and quantitatively. Additionally, ODLS also shows nice robustness to different undersampling scenarios and some mismatches between the training and test data. In summary, our work demonstrates that the 1D deep learning scheme is memory-efficient and robust in fast MRI.

Exponential function is a basic form of temporal signals, and how to fast acquire this signal is one of the fundamental problems and frontiers in signal processing. To achieve this goal, partial data may be acquired but result in severe artifacts in its spectrum, which is the Fourier transform of exponentials. Thus, reliable spectrum reconstruction is highly expected in the fast data acquisition in many applications, such as chemistry, biology, and medical imaging. In this work, we propose a deep learning method whose neural network structure is designed by imitating the iterative process in the model-based state-of-the-art exponentials' reconstruction method with the low-rank Hankel matrix factorization. With the experiments on synthetic data and realistic biological magnetic resonance signals, we demonstrate that the new method yields much lower reconstruction errors and preserves the low-intensity signals much better than compared methods.

The nonuniform sampling (NUS) is a powerful approach to enable fast acquisition but requires sophisticated reconstruction algorithms. Faithful reconstruction from partially sampled exponentials is highly expected in general signal processing and many applications. Deep learning (DL) has shown astonishing potential in this field, but many existing problems, such as lack of robustness and explainability, greatly limit its applications. In this work, by combining the merits of the sparse model-based optimization method and data-driven DL, we propose a DL architecture for spectra reconstruction from undersampled data, called MoDern. It follows the iterative reconstruction in solving a sparse model to build the neural network, and we elaborately design a learnable soft-thresholding to adaptively eliminate the spectrum artifacts introduced by undersampling. Extensive results on both synthetic and biological data show that MoDern enables more robust, high-fidelity, and ultrafast reconstruction than the state-of-the-art methods. Remarkably, MoDern has a small number of network parameters and is trained on solely synthetic data while generalizing well to biological data in various scenarios. Furthermore, we extend it to an open-access and easy-to-use cloud computing platform (XCloud-MoDern), contributing a promising strategy for further development of biological applications.

Abstract The nuclear magnetic resonance (NMR) spectroscopy has fruitful applications in chemistry, biology and life sciences, but suffers from long acquisition time. Non‐uniform sampling is a typical fast NMR method by undersampling the time‐domain data of the spectrum but need to restore the fully sampled data with proper constraints. The state‐of‐the‐art method is to model the time‐domain data as the sum of exponential functions and reconstruct these data by enforcing the low rankness of Hankel matrix. However, this method is solved by minimizing the sum of singular values of the Hankel matrix, which leads to the distortion of low‐intensity spectral peaks. Here, a low rank Hankel matrix reconstruction approach with a partial sum of singular values is proposed to protect small singular values, which can faithfully reconstruct all peaks. Results on both synthetic and realistic NMR spectroscopy show that the proposed method can reconstruct a more consistent spectrum to the fully sampled one than other state‐of‐the‐art methods and have particular advantages on preserving low‐intensity peaks .