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Nobuyoshi Shimizu

dblp:81/2961 · DBLP profile ↗
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2ranked-venue papers
0as first author
0since 2021 · last 2005
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 71% Medical and health informatics · 29%

Topics — the 5 heaviest of 6, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Medical and health informatics
anatomical ontology
0.112005
MEPD: a resource for medaka gene expression patterns · Bioinform. 2005
Bioinformatics and computational biology › biological database
gene expression database
0.112005
MEPD: a resource for medaka gene expression patterns · Bioinform. 2005
Bioinformatics and computational biology
ontology
0.112005
MEPD: a resource for medaka gene expression patterns · Bioinform. 2005
Bioinformatics and computational biology › statistical genetics
gene mapping
0.011993
GeneView: multi-language human gene mapping library with a graphical user interface · Comput. Appl. Biosci. 1993
Bioinformatics and computational biology › genomics › genome visualization
genetic map visualization
0.011993
GeneView: multi-language human gene mapping library with a graphical user interface · Comput. Appl. Biosci. 1993

Methods — techniques the papers use, named apart from their topics

gene ontology · 0.1BLAST · 0.1graphical user interface · 0.0
YearPublicationVenuePosition
2005 MEPD: a resource for medaka gene expression patterns
abstract
Summary: The Medaka Expression Pattern Database (MEPD) is a database for gene expression patterns determined by in situ hybridization in the small freshwater fish medaka (Oryzias latipes). Data have been collected from various research groups and MEPD is developing into a central expression pattern depository within the medaka community. Gene expression patterns are described by images and terms of a detailed medaka anatomy ontology of over 4000 terms, which we have developed for this purpose and submitted to Open Biological Ontologies. Sequences have been annotated via BLAST match results and using Gene Ontology terms. These new features will facilitate data analyses using bioinformatics approaches and allow cross-species comparisons of gene expression patterns. Presently, MEPD has 19 757 entries, for 1024 of them the expression pattern has been determined. Availability: A new version has been implemented at the EMBL in Heidelberg and is now accessible at http://www.embl.de/mepd Contact: [email protected] Supplementary information: http://www.embl.de/mepd/supplement.html
Thorsten Henrich, Mirana Ramialison, Beate Wittbrodt, Beatrice Assouline, Franck Bourrat, Anja Berger, Heinz Himmelbauer, Takashi Sasaki, Nobuyoshi Shimizu, Monte Westerfield, Hisato Kondoh, Joachim Wittbrodt
Bioinform.9
1993 GeneView: multi-language human gene mapping library with a graphical user interface
abstract
GeneView is a newly developed human gene mapping library system that works on an X-Window platform. This system is designed for researchers who routinely utilize gene mapping data in the laboratory but are unfamiliar with computer technology. GeneView offers various features, including friendly user interface, fast operation and visualization facility. Genetic loci are displayed graphically with an idiogram. This system can be operated in multiple languages. A current version supports Japanese and English, and can be easily expanded to include other languages. A prototype of GeneView is now installed on a SPARC (Sun4) workstation. Because of the X-Window platform, GeneView should be compatible with various types of workstations.
Hiroshi Dohi, Mitsuru Ishizuka, Shinsei Minoshima, Nobuyoshi Shimizu
Comput. Appl. Biosci.4