VLDB 2026 Research / reviewers in the wild / expert
Qingxia Chen
dblp:82/9195
· DBLP profile ↗
33ranked-venue papers
3as first author
14since 2021 · last 2026
—ORCID · conflict
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 29 · 13 since 2021Computer networks · 3 · 3 first-authorSystems, architecture and hardware · 1 · 1 since 2021Databases, data management, data science and information retrieval · 1 · 1 since 2021
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | JSQKV: Joint Sparsification and Quantization for KV-Cache Compression and Decode Acceleration
Xiaoli Gong, Huayou Su, Qingxia Chen, Jin Zhang 0003 |
APPT | 5 |
| 2025 | Using Large Language Model for Efficient Extraction of Treatment Discontinuation Information - A Study of Online Breast Cancer Community Posts
Qingyuan Song, Jessie Yang, Ndidiamaka Obi, Congning Ni, Jeremy L. Warner, Qingxia Chen, S. Trent Rosenbloom, Bradley A. Malin, Zhijun Yin |
AIME (2) | 6 |
| 2025 | Unpaired Image Style Translations Using Mamba Adversarial Networks
Zhou Hong, Zhanjie Zhang, Juqin Wang, Yanzhao Shan, Jingwen Yu, Qingxia Chen |
ICIC (10) | 11 |
| 2025 | Catalysts of Conversation: Examining Interaction Dynamics Between Topic Initiators and Commentors in Alzheimer's Disease Online CommunitiesabstractInformal caregivers (e.g., family members or friends) of people living with Alzheimer's Disease and Related Dementias (ADRD) face substantial challenges and often seek support through online communities. Understanding the factors driving engagement within these platforms is crucial, as it can enhance communities' long-term value to meet their needs effectively. This study investigated the user interaction dynamics within two large, popular ADRD communities, TalkingPoint and ALZConnected, focusing on topic initiator engagement, initial post content, and the linguistic patterns of comments at the thread level. Using analytical methods such as propensity score matching, topic modeling, and predictive modeling, we found that active topic initiator engagement drives a higher comment volume, and reciprocal replies from topic initiators encourage further commentor engagement at the community level. Practical caregiving topics prompt more re-engagement of topic initiators, while emotional support topics attract more comments from commentors. Additionally, the linguistic complexity and emotional tone of a comment are associated with its likelihood of receiving replies from topic initiators. These findings highlight the importance of fostering active and reciprocal engagement and providing effective strategies to enhance sustainability in ADRD caregiving and broader health-related online communities. Congning Ni, Qingxia Chen, Patricia Commiskey, Qingyuan Song, Bradley A. Malin, Zhijun Yin |
WWW | 2 |
| 2024 | Balancing efficacy and computational burden: weighted mean, multiple imputation, and inverse probability weighting methods for item non-response in reliable scalesabstractIMPORTANCE: Scales often arise from multi-item questionnaires, yet commonly face item non-response. Traditional solutions use weighted mean (WMean) from available responses, but potentially overlook missing data intricacies. Advanced methods like multiple imputation (MI) address broader missing data, but demand increased computational resources. Researchers frequently use survey data in the All of Us Research Program (All of Us), and it is imperative to determine if the increased computational burden of employing MI to handle non-response is justifiable. OBJECTIVES: Using the 5-item Physical Activity Neighborhood Environment Scale (PANES) in All of Us, this study assessed the tradeoff between efficacy and computational demands of WMean, MI, and inverse probability weighting (IPW) when dealing with item non-response. MATERIALS AND METHODS: Synthetic missingness, allowing 1 or more item non-response, was introduced into PANES across 3 missing mechanisms and various missing percentages (10%-50%). Each scenario compared WMean of complete questions, MI, and IPW on bias, variability, coverage probability, and computation time. RESULTS: All methods showed minimal biases (all <5.5%) for good internal consistency, with WMean suffered most with poor consistency. IPW showed considerable variability with increasing missing percentage. MI required significantly more computational resources, taking >8000 and >100 times longer than WMean and IPW in full data analysis, respectively. DISCUSSION AND CONCLUSION: The marginal performance advantages of MI for item non-response in highly reliable scales do not warrant its escalated cloud computational burden in All of Us, particularly when coupled with computationally demanding post-imputation analyses. Researchers using survey scales with low missingness could utilize WMean to reduce computing burden. Andrew Guide, Shawn Garbett, Xiaoke Feng, Brandy Mapes, Justin Cook, Lina M. Sulieman, Robert M. Cronin, Qingxia Chen |
J. Am. Medical Informatics Assoc. | 8 |
| 2024 | Identifying erroneous height and weight values from adult electronic health records in the All of Us research programabstractINTRODUCTION: Electronic Health Records (EHR) are a useful data source for research, but their usability is hindered by measurement errors. This study investigated an automatic error detection algorithm for adult height and weight measurements in EHR for the All of Us Research Program (All of Us). METHODS: We developed reference charts for adult heights and weights that were stratified on participant sex. Our analysis included 4,076,534 height and 5,207,328 wt measurements from ∼ 150,000 participants. Errors were identified using modified standard deviation scores, differences from their expected values, and significant changes between consecutive measurements. We evaluated our method with chart-reviewed heights (8,092) and weights (9,039) from 250 randomly selected participants and compared it with the current cleaning algorithm in All of Us. RESULTS: The proposed algorithm classified 1.4 % of height and 1.5 % of weight errors in the full cohort. Sensitivity was 90.4 % (95 % CI: 79.0-96.8 %) for heights and 65.9 % (95 % CI: 56.9-74.1 %) for weights. Precision was 73.4 % (95 % CI: 60.9-83.7 %) for heights and 62.9 (95 % CI: 54.0-71.1 %) for weights. In comparison, the current cleaning algorithm has inferior performance in sensitivity (55.8 %) and precision (16.5 %) for height errors while having higher precision (94.0 %) and lower sensitivity (61.9 %) for weight errors. DISCUSSION: Our proposed algorithm outperformed in detecting height errors compared to weights. It can serve as a valuable addition to the current All of Us cleaning algorithm for identifying erroneous height values. Andrew Guide, Lina M. Sulieman, Shawn Garbett, Robert M. Cronin, Matthew E. Spotnitz, Karthik Natarajan, Robert J. Carroll, Paul A. Harris, Qingxia Chen |
J. Biomed. Informatics | 9 |
| 2022 | Identifying Erroneous Height and Weight Values from Adult Electronic Health Records
Andrew Guide, Lina M. Sulieman, Qingxia Chen |
AMIA | 3 |
| 2022 | Predicting the Retention of Subsequent Surveys in the All of Us
Lina M. Sulieman, Xiaoke Feng, Qingxia Chen, Robert M. Cronin |
AMIA | 3 |
| 2022 | Cox regression is robust to inaccurate EHR-extracted event time: an application to EHR-based GWASabstractMOTIVATION: Logistic regression models are used in genomic studies to analyze the genetic data linked to electronic health records (EHRs), and do not take full usage of the time-to-event information available in EHRs. Previous work has shown that Cox regression, which can account for left truncation and right censoring in EHRs, increased the power to detect genotype-phenotype associations compared to logistic regression. We extend this to evaluate the relative performance of Cox regression and various logistic regression models in the presence of positive errors in event time (delayed event time), relating to recorded event time accuracy. RESULTS: One Cox model and three logistic regression models were considered under different scenarios of delayed event time. Extensive simulations and a genomic study application were used to evaluate the impact of delayed event time. While logistic regression does not model the time-to-event directly, various logistic regression models used in the literature were more sensitive to delayed event time than Cox regression. Results highlighted the importance to identify and exclude the patients diagnosed before entry time. Cox regression had similar or modest improvement in statistical power over various logistic regression models at controlled type I error. This was supported by the empirical data, where the Cox models steadily had the highest sensitivity to detect known genotype-phenotype associations under all scenarios of delayed event time. AVAILABILITY AND IMPLEMENTATION: Access to individual-level EHR and genotype data is restricted by the IRB. Simulation code and R script for data process are at: https://github.com/QingxiaCindyChen/CoxRobustEHR.git. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Rebecca Irlmeier, Jacob J. Hughey, Lisa Bastarache, Joshua C. Denny, Qingxia Chen |
Bioinform. | 5 |
| 2021 | Imprecision and Preferences in Interpretation of Verbal Probabilities in Health: A Systematic Review
Katerina Andreadis, Ethan Chan, Minha Park, Natalie C. Benda, Mohit Manoj Sharma, Michelle Demetres, Diana Delgado, Elizabeth Sigworth, Qingxia Chen, Lisa Grossman Liu, Marianne Sharko, Brian J. Zikmund-Fisher, Jessica S. Ancker |
AMIA | 9 |
| 2021 | Measuring the correctness of All of Us physical measurement
Lina M. Sulieman, Karthik Natarajan, Qingxia Chen, Robert J. Carroll, Kayla Marginean, Paul A. Harris, Andrea H. Ramirez |
AMIA | 3 |
| 2021 | Comparison of family health history in surveys vs electronic health record data mapped to the observational medical outcomes partnership data model in the All of Us Research ProgramabstractOBJECTIVE: Family health history is important to clinical care and precision medicine. Prior studies show gaps in data collected from patient surveys and electronic health records (EHRs). The All of Us Research Program collects family history from participants via surveys and EHRs. This Demonstration Project aims to evaluate availability of family health history information within the publicly available data from All of Us and to characterize the data from both sources. MATERIALS AND METHODS: Surveys were completed by participants on an electronic portal. EHR data was mapped to the Observational Medical Outcomes Partnership data model. We used descriptive statistics to perform exploratory analysis of the data, including evaluating a list of medically actionable genetic disorders. We performed a subanalysis on participants who had both survey and EHR data. RESULTS: There were 54 872 participants with family history data. Of those, 26% had EHR data only, 63% had survey only, and 10.5% had data from both sources. There were 35 217 participants with reported family history of a medically actionable genetic disorder (9% from EHR only, 89% from surveys, and 2% from both). In the subanalysis, we found inconsistencies between the surveys and EHRs. More details came from surveys. When both mentioned a similar disease, the source of truth was unclear. CONCLUSIONS: Compiling data from both surveys and EHR can provide a more comprehensive source for family health history, but informatics challenges and opportunities exist. Access to more complete understanding of a person's family health history may provide opportunities for precision medicine. Robert M. Cronin, Alese E. Halvorson, Cassie Springer, Xiaoke Feng, Lina M. Sulieman, Roxana Loperena-Cortes, Kelsey R. Mayo, Robert J. Carroll, Qingxia Chen, Brian K. Ahmedani, Jason Karnes, Bruce Korf, Christopher J. O'Donnell, Andrea H. Ramirez |
J. Am. Medical Informatics Assoc. | 9 |
| 2021 | Ensemble learning to predict opioid-related overdose using statewide prescription drug monitoring program and hospital discharge data in the state of TennesseeabstractOBJECTIVE: To develop and validate algorithms for predicting 30-day fatal and nonfatal opioid-related overdose using statewide data sources including prescription drug monitoring program data, Hospital Discharge Data System data, and Tennessee (TN) vital records. Current overdose prevention efforts in TN rely on descriptive and retrospective analyses without prognostication. MATERIALS AND METHODS: Study data included 3 041 668 TN patients with 71 479 191 controlled substance prescriptions from 2012 to 2017. Statewide data and socioeconomic indicators were used to train, ensemble, and calibrate 10 nonparametric "weak learner" models. Validation was performed using area under the receiver operating curve (AUROC), area under the precision recall curve, risk concentration, and Spiegelhalter z-test statistic. RESULTS: Within 30 days, 2574 fatal overdoses occurred after 4912 prescriptions (0.0069%) and 8455 nonfatal overdoses occurred after 19 460 prescriptions (0.027%). Discrimination and calibration improved after ensembling (AUROC: 0.79-0.83; Spiegelhalter P value: 0-.12). Risk concentration captured 47-52% of cases in the top quantiles of predicted probabilities. DISCUSSION: Partitioning and ensembling enabled all study data to be used given computational limits and helped mediate case imbalance. Predicting risk at the prescription level can aggregate risk to the patient, provider, pharmacy, county, and regional levels. Implementing these models into Tennessee Department of Health systems might enable more granular risk quantification. Prospective validation with more recent data is needed. CONCLUSION: Predicting opioid-related overdose risk at statewide scales remains difficult and models like these, which required a partnership between an academic institution and state health agency to develop, may complement traditional epidemiological methods of risk identification and inform public health decisions. Michael Ripperger, Sarah C. Lotspeich, Drew Wilimitis, Carrie E. Fry, Allison Roberts, Matthew C. Lenert, Charlotte Cherry, Sanura Latham, Katelyn Robinson, Qingxia Chen, Melissa McPheeters, Ben Tyndall, Colin G. Walsh |
J. Am. Medical Informatics Assoc. | 10 |
| 2021 | DDIWAS: High-throughput electronic health record-based screening of drug-drug interactionsabstractOBJECTIVE: We developed and evaluated Drug-Drug Interaction Wide Association Study (DDIWAS). This novel method detects potential drug-drug interactions (DDIs) by leveraging data from the electronic health record (EHR) allergy list. MATERIALS AND METHODS: To identify potential DDIs, DDIWAS scans for drug pairs that are frequently documented together on the allergy list. Using deidentified medical records, we tested 616 drugs for potential DDIs with simvastatin (a common lipid-lowering drug) and amlodipine (a common blood-pressure lowering drug). We evaluated the performance to rediscover known DDIs using existing knowledge bases and domain expert review. To validate potential novel DDIs, we manually reviewed patient charts and searched the literature. RESULTS: DDIWAS replicated 34 known DDIs. The positive predictive value to detect known DDIs was 0.85 and 0.86 for simvastatin and amlodipine, respectively. DDIWAS also discovered potential novel interactions between simvastatin-hydrochlorothiazide, amlodipine-omeprazole, and amlodipine-valacyclovir. A software package to conduct DDIWAS is publicly available. CONCLUSIONS: In this proof-of-concept study, we demonstrate the value of incorporating information mined from existing allergy lists to detect DDIs in a real-world clinical setting. Since allergy lists are routinely collected in EHRs, DDIWAS has the potential to detect and validate DDI signals across institutions. Patrick Wu, Scott D. Nelson, Juan Zhao 0003, Cosby A. Stone Jr., QiPing Feng, Qingxia Chen, Eric A. Larson, Bingshan Li, Nancy J. Cox, C. Michael Stein, Elizabeth Phillips, Dan M. Roden, Joshua C. Denny, Wei-Qi Wei |
J. Am. Medical Informatics Assoc. | 6 |
| 2019 | Patient Messaging Content Associated with Initiating Hormonal Therapy after a Breast Cancer Diagnosis
Zhijun Yin, Jeremy L. Warner, Qingxia Chen, Bradley A. Malin |
AMIA | 3 |
| 2019 | Cost-aware active learning for named entity recognition in clinical textabstractOBJECTIVE: Active Learning (AL) attempts to reduce annotation cost (ie, time) by selecting the most informative examples for annotation. Most approaches tacitly (and unrealistically) assume that the cost for annotating each sample is identical. This study introduces a cost-aware AL method, which simultaneously models both the annotation cost and the informativeness of the samples and evaluates both via simulation and user studies. MATERIALS AND METHODS: We designed a novel, cost-aware AL algorithm (Cost-CAUSE) for annotating clinical named entities; we first utilized lexical and syntactic features to estimate annotation cost, then we incorporated this cost measure into an existing AL algorithm. Using the 2010 i2b2/VA data set, we then conducted a simulation study comparing Cost-CAUSE with noncost-aware AL methods, and a user study comparing Cost-CAUSE with passive learning. RESULTS: Our cost model fit empirical annotation data well, and Cost-CAUSE increased the simulation area under the learning curve (ALC) scores by up to 5.6% and 4.9%, compared with random sampling and alternate AL methods. Moreover, in a user annotation task, Cost-CAUSE outperformed passive learning on the ALC score and reduced annotation time by 20.5%-30.2%. DISCUSSION: Although AL has proven effective in simulations, our user study shows that a real-world environment is far more complex. Other factors have a noticeable effect on the AL method, such as the annotation accuracy of users, the tiredness of users, and even the physical and mental condition of users. CONCLUSION: Cost-CAUSE saves significant annotation cost compared to random sampling. Qiang Wei 0002, Yukun Chen 0001, Mandana Salimi, Joshua C. Denny, Qiaozhu Mei, Thomas A. Lasko, Qingxia Chen, Stephen Wu 0004, Amy Franklin, Trevor Cohen, Hua Xu 0001 |
J. Am. Medical Informatics Assoc. | 7 |
| 2018 | The therapy is making me sick: how online portal communications between breast cancer patients and physicians indicate medication discontinuationabstractObjective: Online platforms have created a variety of opportunities for breast patients to discuss their hormonal therapy, a long-term adjuvant treatment to reduce the chance of breast cancer occurrence and mortality. The goal of this investigation is to ascertain the extent to which the messages breast cancer patients communicated through an online portal can indicate their potential for discontinuing hormonal therapy. Materials and Methods: We studied the de-identified electronic medical records of 1106 breast cancer patients who were prescribed hormonal therapy at Vanderbilt University Medical Center over a 12-year period. We designed a data-driven approach to investigate patients' patterns of messaging with healthcare providers, the topics they communicated, and the extent to which these messaging behaviors associate with the likelihood that a patient will discontinue a prescribed 5-year regimen of therapy. Results: The results indicates that messaging rate over time [hazard ratio (HR) = 1.373, P = 0.002], mentions of side effects (HR = 1.214, P = 0.006), and surgery-related topics (HR = 1.170, P = 0.034) were associated with increased risk of early medication discontinuation. In contrast, seeking professional suggestions (HR = 0.766, P = 0.002), expressing gratitude to healthcare providers (HR = 0.872, P = 0.044), and mentions of drugs used to treat side effects (HR = 0.807, P = 0.013) were associated with decreased risk of medication discontinuation. Discussion and Conclusion: This investigation suggests that patient-generated content can inform the study of health-related behaviors. Given that approximately 50% of breast cancer patients do not complete a course of hormonal therapy as described, the identification of factors associated with medication discontinuation can facilitate real-time interventions to prevent early discontinuation. Zhijun Yin, Morgan Harrell, Jeremy L. Warner, Qingxia Chen, Daniel Fabbri, Bradley A. Malin |
J. Am. Medical Informatics Assoc. | 4 |
| 2018 | Joint Resource Allocation for Software-Defined Networking, Caching, and ComputingabstractAlthough some excellent works have been done on networking, caching, and computing, these three important areas have traditionally been addressed separately in the literature. In this paper, we describe the recent advances in jointing networking, caching, and computing and present a novel integrated framework: software-defined networking, caching, and computing (SD-NCC). SD-NCC enables dynamic orchestration of networking, caching, and computing resources to efficiently meet the requirements of different applications and improve the end-to-end system performance. Energy consumption is considered as an important factor when performing resource placement in this paper. Specifically, we study the joint caching, computing, and bandwidth resource allocation for SD-NCC and formulate it as an optimization problem. In addition, to reduce computational complexity and signaling overhead, we propose a distributed algorithm to solve the formulated problem, based on recent advances in alternating direction method of multipliers (ADMM), in which different network nodes only need to solve their own problems without exchange of caching/computing decisions with fast convergence rate. Simulation results show the effectiveness of our proposed framework and ADMM-based algorithm with different system parameters. Qingxia Chen, F. Richard Yu, Tao Huang 0005, Renchao Xie, Jiang Liu 0010, Yunjie Liu 0001 |
IEEE/ACM Trans. Netw. | 1 |
| 2017 | Software Defined Networking, Caching and Computing Resource Allocation with Imperfect NSIabstractWe propose a novel framework called Software Defined Networking, Caching and Computing (SD-NCC) which integrates networking, caching and computing in a systematic way to improve the end-to-end system performance. In SDNCC, the more in-network resources it utilizes, the less network usage it costs under the same service demands. However only minimizing the total network usage leads to bottlenecks in the network, making the network fragile to traffic bursts. In this paper, we study the joint networking, caching and computing resource allocation issue and formulate it as an optimization problem to make a trade off between minimizing network usage and balancing servers' load. In addition, taking into consideration the inaccurate measurement of network state information (NSI), we reformulate this problem under imperfect NSI. Because the joint allocation problems with imperfect NSI are large-scale combinational optimization problems, we propose a discrete stochastic approximation(DSA) algorithm to deal with it. Finally, simulations are conducted to demonstrate the effectiveness of proposed framework and algorithms. Simulation results show that SD-NCC can significantly improve the end-to-end performance by sharing the physical infrastructure and information resources. Besides, DSA algorithms can achieve near-optimal performance. Qingxia Chen, Renchao Xie, Tao Huang 0005, Jiang Liu 0010, Yunjie Liu 0001 |
GLOBECOM | 1 |
| 2016 | Joint Resource Allocation for Software Defined Networking, Caching and ComputingabstractRecently, there are significant advances in the areas of networking, caching and computing. Nevertheless, these three important areas have traditionally been addressed separately in the existing research. In this paper, we present a novel framework that integrates networking, caching and computing in a systematic way and enables dynamic orchestration of these three resources to improve the end-to-end system performance and meet the requirements of different applications. Then, we consider the bandwidth, caching and computing resource allocation issue and formulate it as a joint caching/computing strategy and servers selection problem to minimize the combination cost of network usage and energy consumption in the framework. To minimize the combination cost of network usage and energy consumption in the framework, we formulate it as a joint caching/computing strategy and servers selection problem. In addition, we solve the joint caching/computing strategy and servers selection problem using an exhaustive-search algorithm. Simulation results show that our proposed framework significantly outperforms the traditional network without in-network caching/computing in terms of network usage and energy consumption. Qingxia Chen, F. Richard Yu, Tao Huang 0005, Renchao Xie, Jiang Liu 0010, Yunjie Liu 0001 |
GLOBECOM | 1 |
| 2016 | The feasibility of text reminders to improve medication adherence in adolescents with asthmaabstractOBJECTIVE: Personal health applications have the potential to help patients with chronic disease by improving medication adherence, self-efficacy, and quality of life. The goal of this study was to assess the impact of MyMediHealth (MMH) - a website and a short messaging service (SMS)-based reminder system - on medication adherence and perceived self-efficacy in adolescents with asthma. METHODS: We conducted a block-randomized controlled study in academic pediatric outpatient settings. There were 98 adolescents enrolled. Subjects who were randomized to use MMH were asked to create a medication schedule and receive SMS reminders at designated medication administration times for 3 weeks. Control subjects received action lists as a part of their usual care. Primary outcome measures included MMH usage patterns and self-reports of system usability, medication adherence, asthma control, self-efficacy, and quality of life. RESULTS: Eighty-nine subjects completed the study, of whom 46 were randomized to the intervention arm. Compared to controls, we found improvements in self-reported medication adherence (P = .011), quality of life (P = .037), and self-efficacy (P = .016). Subjects reported high satisfaction with MMH; however, the level of system usage varied widely, with lower use among African American patients. CONCLUSIONS: MMH was associated with improved medication adherence, perceived quality of life, and self-efficacy.Trial Registration This project was registered under http://clinicaltrials.gov/ identifier NCT01730235. Kevin B. Johnson, Barron L. Patterson, Yun-Xian Ho, Qingxia Chen, Hui Nian, Coda L. Davison, Jason Slagle, Shelagh A. Mulvaney |
J. Am. Medical Informatics Assoc. | 4 |
| 2015 | Real Time Active Learning Study for Clinical Named Entity Recognition
Yukun Chen 0001, Sungrim Moon, Thomas A. Lasko, Qiaozhu Mei, Trevor Cohen, Qingxia Chen, Joshua C. Denny, Hua Xu 0001 |
AMIA | 7 |
| 2015 | Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortalityabstractOBJECTIVES: Drug repurposing, which finds new indications for existing drugs, has received great attention recently. The goal of our work is to assess the feasibility of using electronic health records (EHRs) and automated informatics methods to efficiently validate a recent drug repurposing association of metformin with reduced cancer mortality. METHODS: By linking two large EHRs from Vanderbilt University Medical Center and Mayo Clinic to their tumor registries, we constructed a cohort including 32,415 adults with a cancer diagnosis at Vanderbilt and 79,258 cancer patients at Mayo from 1995 to 2010. Using automated informatics methods, we further identified type 2 diabetes patients within the cancer cohort and determined their drug exposure information, as well as other covariates such as smoking status. We then estimated HRs for all-cause mortality and their associated 95% CIs using stratified Cox proportional hazard models. HRs were estimated according to metformin exposure, adjusted for age at diagnosis, sex, race, body mass index, tobacco use, insulin use, cancer type, and non-cancer Charlson comorbidity index. RESULTS: Among all Vanderbilt cancer patients, metformin was associated with a 22% decrease in overall mortality compared to other oral hypoglycemic medications (HR 0.78; 95% CI 0.69 to 0.88) and with a 39% decrease compared to type 2 diabetes patients on insulin only (HR 0.61; 95% CI 0.50 to 0.73). Diabetic patients on metformin also had a 23% improved survival compared with non-diabetic patients (HR 0.77; 95% CI 0.71 to 0.85). These associations were replicated using the Mayo Clinic EHR data. Many site-specific cancers including breast, colorectal, lung, and prostate demonstrated reduced mortality with metformin use in at least one EHR. CONCLUSIONS: EHR data suggested that the use of metformin was associated with decreased mortality after a cancer diagnosis compared with diabetic and non-diabetic cancer patients not on metformin, indicating its potential as a chemotherapeutic regimen. This study serves as a model for robust and inexpensive validation studies for drug repurposing signals using EHR data. Hua Xu 0001, Melinda Aldrich, Qingxia Chen, Neeraja B. Peterson, Mia A. Levy, Anushi Shah, Xiaoyang Ruan, Min Jiang 0007, Jamii St Julien, Jeremy L. Warner, Carol Friedman, Dan M. Roden, Joshua C. Denny |
J. Am. Medical Informatics Assoc. | 3 |
| 2014 | Mining electronic health record data to detect drug-repurposing signals for cancers
Hua Xu 0001, Qingxia Chen, Jeremy L. Warner, Min Jiang 0007, Anushi Shah, Melinda Aldrich, Joshua C. Denny |
AMIA | 2 |
| 2014 | An assessment of pharmacists' readiness for paperless labeling: a national surveyabstractOBJECTIVE: To assess the state of readiness for the adoption of paperless labeling among a nationally representative sample of pharmacies, including chain pharmacies, independent retail pharmacies, hospitals, and other rural or urban dispensing sites. METHODS: Both quantitative and qualitative analyses were used to analyze responses to a cross-sectional survey disseminated to American Pharmacists Association pharmacists nationwide. The survey assessed factors related to pharmacists' attitudinal readiness (ie, perceptions of impact) and pharmacies' structural readiness (eg, availability of electronic resources, internet access) for the paperless labeling initiative. RESULTS: We received a total of 436 survey responses (6% response rate) from pharmacists representing 44 US states and territories. Across the spectrum of settings we studied, pharmacists had work access to computers, printers, fax machines and access to the internet or intranet. Approximately 79% of respondents believed that the initiative would improve the adequacy of drug information available in their work site and 95% believed it would either not change (33%) or would improve (62%) communication to patients. Overall, respondents' comments supported advancing the initiative; however, some comments revealed reservations regarding corporate or pharmacy buy-in, success of implementation, and ease of adoption. CONCLUSIONS: This is the first nationwide study to report about pharmacists' perspectives on paperless labeling. In general, pharmacists believe they are ready and that their pharmacies are well equipped for the transition to paperless labeling. Further exploration of perspectives from product label manufacturers and corporate pharmacy offices is needed to understand fully what will be necessary to complete this transition. Yun-Xian Ho, Qingxia Chen, Hui Nian, Kevin B. Johnson |
J. Am. Medical Informatics Assoc. | 2 |
| 2014 | Medical decision support using machine learning for early detection of late-onset neonatal sepsisabstractOBJECTIVE: The objective was to develop non-invasive predictive models for late-onset neonatal sepsis from off-the-shelf medical data and electronic medical records (EMR). DESIGN: The data used in this study are from 299 infants admitted to the neonatal intensive care unit in the Monroe Carell Jr. Children's Hospital at Vanderbilt and evaluated for late-onset sepsis. Gold standard diagnostic labels (sepsis negative, culture positive sepsis, culture negative/clinical sepsis) were assigned based on all the laboratory, clinical and microbiology data available in EMR. Only data that were available up to 12 h after phlebotomy for blood culture testing were used to build predictive models using machine learning (ML) algorithms. MEASUREMENT: We compared sensitivity, specificity, positive predictive value and negative predictive value of sepsis treatment of physicians with the predictions of models generated by ML algorithms. RESULTS: The treatment sensitivity of all the nine ML algorithms and specificity of eight out of the nine ML algorithms tested exceeded that of the physician when culture-negative sepsis was included. When culture-negative sepsis was excluded both sensitivity and specificity exceeded that of the physician for all the ML algorithms. The top three predictive variables were the hematocrit or packed cell volume, chorioamnionitis and respiratory rate. CONCLUSIONS: Predictive models developed from off-the-shelf and EMR data using ML algorithms exceeded the treatment sensitivity and treatment specificity of clinicians. A prospective study is warranted to assess the clinical utility of the ML algorithms in improving the accuracy of antibiotic use in the management of neonatal sepsis. Subramani Mani, Asli Ozdas, Constantin F. Aliferis, Huseyin Atakan Varol, Qingxia Chen, Randy J. Carnevale, Yukun Chen 0001, Joann Romano-Keeler, Hui Nian, Jörn-Hendrik Weitkamp |
J. Am. Medical Informatics Assoc. | 5 |
| 2012 | A Study of Transportability of an Existing Smoking Status Detection Module across Institutions
Anushi Shah, Min Jiang 0007, Neeraja B. Peterson, Melinda Aldrich, Qingxia Chen, Erica A. Bowton, Joshua C. Denny, Hua Xu 0001 |
AMIA | 7 |
| 2012 | Electronic health record data suggests metformin improves cancer survival: A new model for drug repurposing studies
Hua Xu 0001, Melinda Aldrich, Qingxia Chen, Neeraja B. Peterson, Mia A. Levy, Anushi Shah, Carol Friedman, Joshua C. Denny |
AMIA | 3 |
| 2012 | Focus on health information technology, electronic health records and their financial impact: The financial impact of health information exchange on emergency department careabstractOBJECTIVE: To examine the financial impact health information exchange (HIE) in emergency departments (EDs). MATERIALS AND METHODS: We studied all ED encounters over a 13-month period in which HIE data were accessed in all major emergency departments Memphis, Tennessee. HIE access encounter records were matched with similar encounter records without HIE access. Outcomes studied were ED-originated hospital admissions, admissions for observation, laboratory testing, head CT, body CT, ankle radiographs, chest radiographs, and echocardiograms. Our estimates employed generalized estimating equations for logistic regression models adjusted for admission type, length of stay, and Charlson co-morbidity index. Marginal probabilities were used to calculate changes in outcome variables and their financial consequences. RESULTS: HIE data were accessed in approximately 6.8% of ED visits across 12 EDs studied. In 11 EDs directly accessing HIE data only through a secure Web browser, access was associated with a decrease in hospital admissions (adjusted odds ratio (OR)=0.27; p<0001). In a 12th ED relying more on print summaries, HIE access was associated with a decrease in hospital admissions (OR=0.48; p<0001) and statistically significant decreases in head CT use, body CT use, and laboratory test ordering. DISCUSSION: Applied only to the study population, HIE access was associated with an annual cost savings of $1.9 million. Net of annual operating costs, HIE access reduced overall costs by $1.07 million. Hospital admission reductions accounted for 97.6% of total cost reductions. CONCLUSION: Access to additional clinical data through HIE in emergency department settings is associated with net societal saving. Mark E. Frisse, Kevin B. Johnson, Hui Nian, Coda L. Davison, Cynthia S. Gadd, Kim M. Unertl, Pat A. Turri, Qingxia Chen |
J. Am. Medical Informatics Assoc. | 8 |
| 2011 | User perspectives on the usability of a regional health information exchangeabstractOBJECTIVE: We assessed the usability of a health information exchange (HIE) in a densely populated metropolitan region. This grant-funded HIE had been deployed rapidly to address the imminent needs of the patient population and the need to draw wider participation from regional entities. DESIGN: We conducted a cross-sectional survey of individuals given access to the HIE at participating organizations and examined some of the usability and usage factors related to the technology acceptance model. MEASUREMENTS: We probed user perceptions using the Questionnaire for User Interaction Satisfaction, an author-generated Trust scale, and user characteristic questions (eg, age, weekly system usage time). RESULTS: Overall, users viewed the system favorably (ratings for all usability items were greater than neutral (one-sample Wilcoxon test, p<0.0014, Bonferroni-corrected for 35 tests). System usage was regressed on usability, trust, and demographic and user characteristic factors. Three usability factors were positively predictive of system usage: overall reactions (p<0 0.01), learning (p<0.05), and system functionality (p<0.01). Although trust is an important component in collaborative relationships, we did not find that user trust of other participating healthcare entities was significantly predictive of usage. An analysis of respondents' comments revealed ways to improve the HIE. CONCLUSION: We used a rapid deployment model to develop an HIE and found that perceptions of system usability were positive. We also found that system usage was predicted well by some aspects of usability. Results from this study suggest that a rapid development approach may serve as a viable model for developing usable HIEs serving communities with limited resources. Cynthia S. Gadd, Yun-Xian Ho, Cather Marie Cala, Dana Blakemore, Qingxia Chen, Mark E. Frisse, Kevin B. Johnson |
J. Am. Medical Informatics Assoc. | 5 |
| 2011 | Health information exchange usage in emergency departments and clinics: the who, what, and whyabstractOBJECTIVE: Health information exchange (HIE) systems are being developed across the nation. Understanding approaches taken by existing successful exchanges can help new exchange efforts determine goals and plan implementations. The goal of this study was to explore characteristics of use and users of a successful regional HIE. DESIGN: We used a mixed-method analysis, consisting of cross-sectional audit log data, semi-structured interviews, and direct observation in a sample of emergency departments and ambulatory safety net clinics actively using HIE. For each site, we measured overall usage trends, user logon statistics, and data types accessed by users. We also assessed reasons for use and outcomes of use. RESULTS: Overall, users accessed HIE for 6.8% of all encounters, with higher rates of access for repeat visits, for patients with comorbidities, for patients known to have data in the exchange, and at sites providing HIE access to both nurses and physicians. Discharge summaries and test reports were the most frequently accessed data in the exchange. Providers consistently noted retrieving additional history, preventing repeat tests, comparing new results to retrieved results, and avoiding hospitalizations as a consequence of HIE access. CONCLUSION: HIE use in emergency departments and ambulatory clinics was focused on patients where missing information was believed to be present in the exchange and was related to factors including the roles of people with access, the setting, and other site-specific issues that impacted the overall breadth of routine system use. These data should form an important foundation as other sites embark upon HIE implementation. Kevin B. Johnson, Kim M. Unertl, Qingxia Chen, Nancy M. Lorenzi, Hui Nian, Mark E. Frisse |
J. Am. Medical Informatics Assoc. | 3 |
| 2010 | Impact of generic substitution decision support on electronic prescribing behaviorabstractOBJECTIVE: To evaluate the impact of generic substitution decision support on electronic (e-) prescribing of generic medications. DESIGN: The authors analyzed retrospective outpatient e-prescribing data from an academic medical center and affiliated network for July 1, 2005-September 30, 2008 using an interrupted time-series design to assess the rate of generic prescribing before and after implementing generic substitution decision support. To assess background secular trends, e-prescribing was compared with a concurrent random sample of hand-generated prescriptions. MEASUREMENTS: Proportion of generic medications prescribed before and after the intervention, evaluated over time, and compared with a sample of prescriptions generated without e-prescribing. RESULTS: The proportion of generic medication prescriptions increased from 32.1% to 54.2% after the intervention (22.1% increase, 95% CI 21.9% to 22.3%), with no diminution in magnitude of improvement post-intervention. In the concurrent control group, increases in proportion of generic prescriptions (29.3% to 31.4% to 37.4% in the pre-intervention, post-intervention, and end-of-study periods, respectively) were not commensurate with the intervention. There was a larger change in generic prescribing rates among authorized prescribers (24.6%) than nurses (18.5%; adjusted OR 1.38, 95% CI 1.17 to 1.63). Two years after the intervention, the proportion of generic prescribing remained significantly higher for e-prescriptions (58.1%; 95% CI 57.5% to 58.7%) than for hand-generated prescriptions ordered at the same time (37.4%; 95% CI 34.9% to 39.9%) (p<0.0001). Generic prescribing increased significantly in every specialty. CONCLUSION: Implementation of generic substitution decision support was associated with dramatic and sustained improvements in the rate of outpatient generic e-prescribing across all specialties. Shane P. Stenner, Qingxia Chen, Kevin B. Johnson |
J. Am. Medical Informatics Assoc. | 2 |
| 2006 | An Electronic Medical Record in Primary Care: Impact on Satisfaction, Work Efficiency and Clinic Processes
David Joos, Qingxia Chen, Jim Jirjis, Kevin B. Johnson |
AMIA | 2 |