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Nickolai Alexandrov

dblp:84/5578 · DBLP profile ↗
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2ranked-venue papers
1as first author
0since 2021 · last 2019
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein structure analysis › protein domain identification
protein domain parsing
0.012003
PDP: protein domain parser · Bioinform. 2003
Bioinformatics and computational biology
protein structure analysis
0.012003
PDP: protein domain parser · Bioinform. 2003
Bioinformatics and computational biology › structural bioinformatics
protein structure database
0.012003
PDP: protein domain parser · Bioinform. 2003
Bioinformatics and computational biology › structural bioinformatics › protein structure classification
SCOP
0.012003
PDP: protein domain parser · Bioinform. 2003

Methods — techniques the papers use, named apart from their topics

benchmark comparison · 0.0
YearPublicationVenuePosition
2019 Progress in single-access information systems for wheat and rice crop improvement
abstract
Improving productivity of the staple crops wheat and rice is essential to feed the growing global population, particularly in the context of a changing climate. However, current rates of yield gain are insufficient to support the predicted population growth. New approaches are required to accelerate the breeding process, and many of these are driven by the application of large-scale crop data. To leverage the substantial volumes and types of data that can be applied for precision breeding, the wheat and rice research communities are working towards the development of integrated systems to access and standardize the dispersed, heterogeneous available data. Here, we outline the initiatives of the International Wheat Information System (WheatIS) and the International Rice Informatics Consortium (IRIC) to establish Web-based single-access systems and data mining tools to make the available resources more accessible, drive discovery and accelerate the production of new crop varieties. We discuss the progress of WheatIS and IRIC towards unifying specialized wheat and rice databases and building custom software platforms to manage and interrogate these data. Single-access crop information systems will strengthen scientific collaboration, optimize the use of public research funds and help achieve the required yield gains in the two most important global food crops.
Armin Scheben, Chon-Kit Kenneth Chan, Locedie Mansueto, Ramil Mauleon, Pierre Larmande, Nickolai Alexandrov, Rod A. Wing, Kenneth L. McNally, Hadi Quesneville, David Edwards
Briefings Bioinform.6
2003 PDP: protein domain parser
abstract
UNLABELLED: We have developed a program for automatic identification of domains in protein three-dimensional structures. Performance of the program was assessed by three different benchmarks: (i) by comparison with the expert-curated SCOP database of structural domains; (ii) by comparison with a collection of manual domain assignments; and (iii) by comparison with a set of 55 proteins, frequently used as a benchmark for automatic domain assignment. In all these benchmarks PDP identified domains correctly in more than 80% of proteins. AVAILABILITY: http://123d.ncifcrf.gov/.
Nickolai Alexandrov, Ilya N. Shindyalov
Bioinform.1