Tobias Heimann

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16ranked-venue papers
5as first author
4since 2021 · last 2023
0009-0002-8496-5100ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 16 · 5 first-author · 4 since 2021Graphics, computer vision, multimedia, augmented reality and games · 10 · 2 first-author · 2 since 2021
YearPublicationVenuePosition
2023 Adaptive Region Selection for Active Learning in Whole Slide Image Semantic Segmentation
Jingna Qiu, Frauke Wilm, Mathias Öttl, Maja Schlereth, Tobias Heimann, Marc Aubreville, Katharina Breininger
MICCAI (2)6
2022 End-to-End Learning for Image-Based Detection of Molecular Alterations in Digital Pathology
Marvin Teichmann, André Aichert, Hanibal Bohnenberger, Philipp Ströbel, Tobias Heimann
MICCAI (2)5
2022 Deep Learning Based Centerline-Aggregated Aortic Hemodynamics: An Efficient Alternative to Numerical Modeling of Hemodynamics
abstract
Image-based patient-specific modelling of hemodynamics are gaining increased popularity as a diagnosis and outcome prediction solution for a variety of cardiovascular diseases. While their potential to improve diagnostic capabilities and thereby clinical outcome is widely recognized, these methods require considerable computational resources since they are mostly based on conventional numerical methods such as computational fluid dynamics (CFD). As an alternative to the numerical methods, we propose a machine learning (ML) based approach to calculate patient-specific hemodynamic parameters. Compared to CFD based methods, our approach holds the benefit of being able to calculate a patient-specific hemodynamic outcome instantly with little need for computational power. In this proof-of-concept study, we present a deep artificial neural network (ANN) capable of computing hemodynamics for patients with aortic coarctation in a centerline aggregated (i.e., locally averaged) form. Considering the complex relation between vessels shape and hemodynamics on the one hand and the limited availability of suitable clinical data on the other, a sufficient accuracy of the ANN may however not be achieved with available data only. Another key aspect of this study is therefore the successful augmentation of available clinical data. Using a statistical shape model, additional training data was generated which substantially increased the ANN's accuracy, showcasing the ability of ML based methods to perform in-silico modelling tasks previously requiring resource intensive CFD simulations.
Pavlo Yevtushenko, Leonid Goubergrits, Lina Gundelwein, Arnaud A. A. Setio, Heiko Ramm, Hans Lamecker, Tobias Heimann, Alexander Meyer, Titus Kühne, Marie Schafstedde
IEEE J. Biomed. Health Informatics7
2021 Synthetic Database of Aortic Morphometry and Hemodynamics: Overcoming Medical Imaging Data Availability
abstract
Modeling of hemodynamics and artificial intelligence have great potential to support clinical diagnosis and decision making. While hemodynamics modeling is extremely time- and resource-consuming, machine learning (ML) typically requires large training data that are often unavailable. The aim of this study was to develop and evaluate a novel methodology generating a large database of synthetic cases with characteristics similar to clinical cohorts of patients with coarctation of the aorta (CoA), a congenital heart disease associated with abnormal hemodynamics. Synthetic data allows use of ML approaches to investigate aortic morphometric pathology and its influence on hemodynamics. Magnetic resonance imaging data (154 patients as well as of healthy subjects) of aortic shape and flow were used to statistically characterize the clinical cohort. The methodology generating the synthetic cohort combined statistical shape modeling of aortic morphometry and aorta inlet flow fields and numerical flow simulations. Hierarchical clustering and non-linear regression analysis were successfully used to investigate the relationship between morphometry and hemodynamics and to demonstrate credibility of the synthetic cohort by comparison with a clinical cohort. A database of 2652 synthetic cases with realistic shape and hemodynamic properties was generated. Three shape clusters and respective differences in hemodynamics were identified. The novel model predicts the CoA pressure gradient with a root mean square error of 4.6 mmHg. In conclusion, synthetic data for anatomy and hemodynamics is a suitable means to address the lack of large datasets and provide a powerful basis for ML to gain new insights into cardiovascular diseases.
Bente Thamsen, Pavlo Yevtushenko, Lina Gundelwein, Arnaud A. A. Setio, Hans Lamecker, Marcus Kelm, Marie Schafstedde, Tobias Heimann, Titus Kühne, Leonid Goubergrits
IEEE Trans. Medical Imaging8
2017 Longitudinal Analysis Using Personalised 3D Cardiac Models with Population-Based Priors: Application to Paediatric Cardiomyopathies
Roch Molléro, Hervé Delingette, Manasi Datar, Tobias Heimann, Jakob A. Hauser, Dilveer Panesar, Andrew Mayall Taylor, Marcus Kelm, Titus Kühne, Marcello Chinali, Gabriele Rinelli, Nicholas Ayache, Xavier Pennec, Maxime Sermesant
MICCAI (2)4
2017 SVF-Net: Learning Deformable Image Registration Using Shape Matching
Marc-Michel Rohé, Manasi Datar, Tobias Heimann, Maxime Sermesant, Xavier Pennec
MICCAI (1)3
2016 Towards Automated Ultrasound Transesophageal Echocardiography and X-Ray Fluoroscopy Fusion Using an Image-Based Co-registration Method
Shanhui Sun, Shun Miao, Tobias Heimann, Terrence Chen, Markus Kaiser 0003, Matthias John 0001, Erin Girard, Rui Liao
MICCAI (1)3
2014 2D/3D Registration of TEE Probe from Two Non-orthogonal C-Arm Directions
Markus Kaiser 0003, Matthias John 0001, Tobias Heimann, Alexander Brost, Thomas Neumuth, Georg Rose
MICCAI (1)3
2014 6DoF Catheter Detection, Application to Intracardiac Echocardiography
Kristof Ralovich, Matthias John 0001, Estelle Camus, Nassir Navab, Tobias Heimann
MICCAI (2)5
2014 Real-time ultrasound transducer localization in fluoroscopy images by transfer learning from synthetic training data
Tobias Heimann, Peter Mountney, Matthias John 0001, Razvan Ioan Ionasec
Medical Image Anal.1
2014 Pose-independent surface matching for intra-operative soft-tissue marker-less registration
Thiago R. dos Santos, Alexander Seitel, Thomas Kilgus, Stefan Suwelack, Anna-Laura Wekerle, Hannes Kenngott, Stefanie Speidel, Heinz-Peter Schlemmer, Hans-Peter Meinzer, Tobias Heimann, Lena Maier-Hein
Medical Image Anal.10
2013 Learning without Labeling: Domain Adaptation for Ultrasound Transducer Localization
Tobias Heimann, Peter Mountney, Matthias John 0001, Razvan Ioan Ionasec
MICCAI (3)1
2010 Multiplicative Jacobian Energy Decomposition Method for Fast Porous Visco-Hyperelastic Soft Tissue Model
Stéphanie Marchesseau, Tobias Heimann, Simon Chatelin, Rémy Willinger, Hervé Delingette
MICCAI (1)2
2009 Statistical shape models for 3D medical image segmentation: A review
Tobias Heimann, Hans-Peter Meinzer
Medical Image Anal.1
2009 Comparison and Evaluation of Methods for Liver Segmentation From CT Datasets
abstract
This paper presents a comparison study between 10 automatic and six interactive methods for liver segmentation from contrast-enhanced CT images. It is based on results from the "MICCAI 2007 Grand Challenge" workshop, where 16 teams evaluated their algorithms on a common database. A collection of 20 clinical images with reference segmentations was provided to train and tune algorithms in advance. Participants were also allowed to use additional proprietary training data for that purpose. All teams then had to apply their methods to 10 test datasets and submit the obtained results. Employed algorithms include statistical shape models, atlas registration, level-sets, graph-cuts and rule-based systems. All results were compared to reference segmentations five error measures that highlight different aspects of segmentation accuracy. All measures were combined according to a specific scoring system relating the obtained values to human expert variability. In general, interactive methods reached higher average scores than automatic approaches and featured a better consistency of segmentation quality. However, the best automatic methods (mainly based on statistical shape models with some additional free deformation) could compete well on the majority of test images. The study provides an insight in performance of different segmentation approaches under real-world conditions and highlights achievements and limitations of current image analysis techniques.
Tobias Heimann, Bram van Ginneken, Martin Styner, Yulia Arzhaeva, Volker Aurich, Christian Bauer 0001, Andreas Beck 0001, Christoph Becker 0002, Reinhard Beichel, György Bekes, Fernando Bello, Gerd Karl Binnig, Horst Bischof, Alexander Bornik, Peter Cashman, Ying Chi, Andrés Cordova, Benoit M. Dawant, Márta Fidrich, Jacob D. Furst, Daisuke Furukawa, Lars Grenacher, Joachim Hornegger, Dagmar Kainmüller, Richard Kitney, Hidefumi Kobatake, Hans Lamecker, Thomas Lange, Brian Lennon, Rui Li 0012, Senhu Li, Hans-Peter Meinzer, Gábor Németh, Daniela Raicu, Anne-Mareike Rau, Eva M. van Rikxoort, Mikaël Rousson, László Ruskó, Kinda Anna Saddi, Günter Schmidt 0001, Dieter Seghers, Akinobu Shimizu, Pieter Slagmolen, Erich Sorantin, Grzegorz Soza, Ruchaneewan Susomboon, Jonathan M. Waite, Andreas Wimmer, Ivo Wolf
IEEE Trans. Medical Imaging1
2006 Active Shape Models for a Fully Automated 3D Segmentation of the Liver - An Evaluation on Clinical Data
Tobias Heimann, Ivo Wolf, Hans-Peter Meinzer
MICCAI (2)1