Catia Pesquita

dblp:17/457 · DBLP profile ↗
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11ranked-venue papers in the field
2as first author
6since 2021 · last 2026
0000-0002-1847-9393ORCID · verified

Domains — venue-derived; a paper can count in several

Knowledge Engineering, Semantic Web & Information Systems · 10 (2 first)Data Mining & Knowledge Discovery · 1
YearPublicationVenuePosition
2026 Interpretable Context-Aware Models Improve Expert Validation in Ontology Matching
Pedro Cotovio, Susana Nunes, Ernesto Jiménez-Ruiz, Catia Pesquita
ESWC (1)4
2026 Explaining Scientific Hypotheses in Drug Development with Knowledge Graphs
Susana Nunes, Catia Pesquita
ESWC (1)2
2025 Towards leveraging explicit negative statements in knowledge graph embeddings
abstract
Knowledge Graphs are used in various domains to represent knowledge about entities and their relations.In the vast majority of cases, they capture what is known to be true about those entities, i.e., positive statements, while the Open World Assumption implicitly states that everything not expressed in the graph may or may not be true.This makes it difficult and less frequent to capture information explicitly known not to be true, i.e., negative statements.Moreover, while those negative statements could bear the potential to learn more useful representations in knowledge graph embeddings, that direction has been explored only rarely.However, in many domains, negative information is particularly interesting, for example, in recommender systems, where negative associations of users and items can help in learning better user representations, or in the biomedical domain, where the knowledge that a patient does exhibit a specific symptom can be crucial for accurate disease diagnosis.In this paper, we argue that negative statements should be given more attention in knowledge graph embeddings.Moreover, we investigate how they can be used in knowledge graph embedding methods, highlighting their potential in some interesting use cases.We discuss some existing works and preliminary results that incorporate explicitly declared negative statements in walk-based knowledge graph embedding methods.Finally, we outline promising avenues for future research in this area.
Rita T. Sousa 0001, Catia Pesquita, Heiko Paulheim
J. Web Semant.2
2023 Biomedical Knowledge Graph Embeddings with Negative Statements
Rita T. Sousa 0001, Sara Silva, Heiko Paulheim, Catia Pesquita
ISWC4
2022 Matching Multiple Ontologies to Build a Knowledge Graph for Personalized Medicine
Marta Contreiras Silva, Daniel Faria, Catia Pesquita
ESWC3
2022 21th International Workshop on Data Mining in Bioinformatics (BIOKDD 2022)
abstract
The goal of the 21th International Workshop on Data Mining in Bioinformatics (BIOKDD 2022) is to encourage KDD researchers to solve the numerous problems and challenges in Bioinformatics using Data Mining technologies. Based on the organizers' expertise and communities, BIOKDD 2022 features 2 closely related themes "Biomedical Ontologies" and "Biological Data Visualization". These themes encourage the knowledge graph community and the data visualization community to work together to solve the many challenging problems in Bioinformatics with new perspectives. The key goal is to accelerate the convergence between Data Mining and Bioinformatics communities to expedite discoveries in basic biology, medicine and healthcare.
Da Yan 0001, Catia Pesquita, Carsten Görg, Jake Yue Chen, Mohammed J. Zaki
KDD2
2019 Visualization and interaction for ontologies and linked data - Editorial
Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita
J. Web Semant.4
2018 A Framework to Conduct and Report on Empirical User Studies in Semantic Web Contexts
Catia Pesquita, Valentina Ivanova, Steffen Lohmann, Patrick Lambrix
EKAW1
2016 User Validation in Ontology Alignment
Zlatan Dragisic, Valentina Ivanova, Patrick Lambrix, Daniel Faria, Ernesto Jiménez-Ruiz, Catia Pesquita
ISWC (1)6
2014 Towards Annotating Potential Incoherences in BioPortal Mappings
Daniel Faria, Ernesto Jiménez-Ruiz, Catia Pesquita, Emanuel Santos, Francisco M. Couto
ISWC (2)3
2013 What's in a 'nym'? Synonyms in Biomedical Ontology Matching
Catia Pesquita, Daniel Faria, Cosmin Stroe, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto
ISWC (1)1