Abstract Entity alignment (EA) aims at identifying equivalent entity pairs across different knowledge graphs (KGs) that refer to the same real-world identity. It has been a compelling but challenging task that requires the integration of heterogeneous information from different KGs to expand the knowledge coverage and enhance inference abilities. To circumvent the shortage of prior seed alignments provided for training, recent EA models utilize pseudo-labeling strategies to iteratively add unaligned entity pairs predicted with high confidence to the seed alignments for model training. However, the adverse impact of confirmation bias during pseudo-labeling has been largely overlooked, thus hindering entity alignment performance. To systematically combat confirmation bias, we propose a new Unified Pseudo-Labeling framework for Entity Alignment (UPL-EA) that explicitly alleviates pseudo-labeling errors to boost the performance of entity alignment. UPL-EA achieves this goal through two key innovations: (1) Optimal Transport (OT)-based pseudo-labeling uses discrete OT modeling as an effective means to determine entity correspondences and reduce erroneous matches across two KGs. An effective criterion is derived to infer pseudo-labeled alignments that satisfy one-to-one correspondences; (2) Parallel pseudo-label ensembling refines pseudo-labeled alignments by combining predictions over multiple models independently trained in parallel. The ensembled pseudo-labeled alignments are thereafter used to augment seed alignments to reinforce subsequent model training for alignment inference. The effectiveness of UPL-EA in eliminating pseudo-labeling errors is both theoretically supported and experimentally validated. Our extensive results and in-depth analyses demonstrate the superiority of UPL-EA over 15 competitive baselines and its utility as a general pseudo-labeling framework for entity alignment.

Link prediction aims to infer the link existence between pairs of nodes in networks/graphs. Despite their wide application, the success of traditional link prediction algorithms is hindered by three major challenges—link sparsity,node attribute noiseanddynamic changes—that are faced by many real-world networks. To address these challenges, we propose aContextualizedSelf-SupervisedLearning (CSSL) framework that fully exploits structural context prediction for link prediction. The proposed CSSL framework learns a link encoder to infer the link existence probability from paired node embeddings, which are constructed via a transformation on node attributes. To generate informative node embeddings for link prediction, structural context prediction is leveraged as a self-supervised learning task to boost the link prediction performance. Two types of structural context are investigated,i.e., context nodes collected from random walksvs.context subgraphs. The CSSL framework can be trained in an end-to-end manner, with the learning of model parameters supervised by both the link prediction and self-supervised learning tasks. The proposed CSSL is a generic and flexible framework in the sense that it can handle both attributed and non-attributed networks, and operate under both transductive and inductive link prediction settings. Extensive experiments and ablation studies on seven real-world benchmark networks demonstrate the superior performance of the proposed self-supervision based link prediction algorithm over state-of-the-art baselines, on different types of networks under both transductive and inductive settings. The proposed CSSL also yields competitive performance in terms of its robustness to node attribute noise and scalability over large-scale networks.

Entity alignment aims to discover unique equivalent entity pairs with the same meaning across different knowledge graphs (KGs). Existing models have focused on projecting KGs into a latent embedding space so that inherent semantics between entities can be captured for entity alignment. However, the adverse impacts of alignment conflicts have been largely overlooked during training, thereby limiting the entity alignment performance. To address this issue, we propose a novel Conflict-aware Pseudo Labeling via Optimal Transport model (CPL-OT) for entity alignment. The key idea is to iteratively pseudo-label alignment pairs empowered with conflict-aware optimal transport (OT) modeling to boost the precision of entity alignment. CPL-OT is composed of two key components—entity embedding learning with global-local aggregation and iterative conflict-aware pseudo labeling—that mutually reinforce each other. To mitigate alignment conflicts during pseudo labeling, we propose to use optimal transport as an effective means to warrant one-to-one entity alignment between two KGs with the minimal overall transport cost. Extensive experiments on benchmark datasets validate the superiority of CPL-OT over state-of-the-art baselines under both settings with and without prior alignment seeds.

In recent years, graph neural networks (GNNs) have emerged as a successful tool in a variety of graph-related applications. However, the performance of GNNs can be deteriorated when noisy connections occur in the original graph structures; besides, the dependence on explicit structures prevents GNNs from being applied to general unstructured scenarios. To address these issues, recently emerged deep graph structure learning (GSL) methods propose to jointly optimize the graph structure along with GNN under the supervision of a node classification task. Nonetheless, these methods focus on a supervised learning scenario, which leads to several problems, i.e., the reliance on labels, the bias of edge distribution, and the limitation on application tasks. In this paper, we propose a more practical GSL paradigm, unsupervised graph structure learning, where the learned graph topology is optimized by data itself without any external guidance (i.e., labels). To solve the unsupervised GSL problem, we propose a novel StrUcture Bootstrapping contrastive LearnIng fraMEwork (SUBLIME for abbreviation) with the aid of self-supervised contrastive learning. Specifically, we generate a learning target from the original data as an “anchor graph”, and use a contrastive loss to maximize the agreement between the anchor graph and the learned graph. To provide persistent guidance, we design a novel bootstrapping mechanism that upgrades the anchor graph with learned structures during model learning. We also design a series of graph learners and post-processing schemes to model the structures to learn. Extensive experiments on eight benchmark datasets demonstrate the significant effectiveness of our proposed SUBLIME and high quality of the optimized graphs.

We present a novel approach for estimating the proportional distributions of function types (i.e. functional distributions) in an urban area through learning semantics preserved embeddings of points-of-interest (POIs). Specifically, we represent POIs as low-dimensional vectors to capture (1) the spatial co-occurrence patterns of POIs and (2) the semantics conveyed by the POI hierarchical categories (i.e. categorical semantics). The proposed approach utilizes spatially explicit random walks in a POI network to learn spatial co-occurrence patterns, and a manifold learning algorithm to capture categorical semantics. The learned POI vector embeddings are then aggregated to generate regional embeddings with long short-term memory (LSTM) and attention mechanisms, to take account of the different levels of importance among the POIs in a region. Finally, a multilayer perceptron (MLP) maps regional embeddings to functional distributions. A case study in Xiamen Island, China implements and evaluates the proposed approach. The results indicate that our approach outperforms several competitive baseline models in all evaluation measures, and yields a relatively high consistency between the estimation and ground truth. In addition, a comprehensive error analysis unveils several intrinsic limitations of POI data for this task, e.g. ambiguous linkage between POIs and functions.

Traditional network embedding primarily focuses on learning a continuous vector representation for each node, preserving network structure and/or node content information, such that off-the-shelf machine learning algorithms can be easily applied to the vector-format node representations for network analysis. However, the learned continuous vector representations are inefficient for large-scale similarity search, which often involves finding nearest neighbors measured by distance or similarity in a continuous vector space. In this article, we propose a search efficient binary network embedding algorithm called BinaryNE to learn a binary code for each node, by simultaneously modeling node context relations and node attribute relations through a three-layer neural network. BinaryNE learns binary node representations using a stochastic gradient descent-based online learning algorithm. The learned binary encoding not only reduces memory usage to represent each node, but also allows fast bit-wise comparisons to support faster node similarity search than using Euclidean or other distance measures. Extensive experiments and comparisons demonstrate that BinaryNE not only delivers more than 25 times faster search speed, but also provides comparable or better search quality than traditional continuous vector based network embedding methods. The binary codes learned by BinaryNE also render competitive performance on node classification and node clustering tasks. The source code of the BinaryNE algorithm is available at https://github.com/daokunzhang/BinaryNE.

Attributed network embedding aims to learn low-dimensional vector representations for nodes in a network, where each node contains rich attributes/features describing node content. Because network topology structure and node attributes often exhibit high correlation, incorporating node attribute proximity into network embedding is beneficial for learning good vector representations. In reality, large-scale networks often have incomplete/missing node content or linkages, yet existing attributed network embedding algorithms all operate under the assumption that networks are complete. Thus, their performance is vulnerable to missing data and suffers from poor scalability. In this paper, we propose a Scalable Incomplete Network Embedding (SINE) algorithm for learning node representations from incomplete graphs. SINE formulates a probabilistic learning framework that separately models pairs of node-context and node-attribute relationships. Different from existing attributed network embedding algorithms, SINE provides greater flexibility to make the best of useful information and mitigate negative effects of missing information on representation learning. A stochastic gradient descent based online algorithm is derived to learn node representations, allowing SINE to scale up to large-scale networks with high learning efficiency. We evaluate the effectiveness and efficiency of SINE through extensive experiments on real-world networks. Experimental results confirm that SINE outperforms state-of-the-art baselines in various tasks, including node classification, node clustering, and link prediction, under settings with missing links and node attributes. SINE is also shown to be scalable and efficient on large-scale networks with millions of nodes/edges and high-dimensional node features. The source code of this paper is available at https://github.com/daokunzhang/SINE.

We address the problem of classifying sparsely labeled networks, where labeled nodes in the network are extremely scarce. Existing algorithms, such as collective classification, have been shown to be effective for jointly deriving labels of related nodes, by exploiting class label dependencies among neighboring nodes. However, when the underlying network is sparsely labeled, most nodes have too few or even no connections to labeled nodes. This makes it very difficult to leverage supervised knowledge from labeled nodes to accurately estimate label dependencies, thereby largely degrading the classification accuracy. In this paper, we propose a novel discriminative matrix factorization (DMF) based algorithm that effectively learns a latent network representation by exploiting topological paths between labeled and unlabeled nodes, in addition to nodes' content information. The main idea is to use matrix factorization to obtain a compact representation of the network that fully encodes nodes' content information and network structure, and unleash discriminative power inferred from labeled nodes to directly benefit collective classification. To achieve this, we formulate a new matrix factorization objective function that integrates network representation learning with an empirical loss minimization for classifying node labels. An efficient optimization algorithm based on conjugate gradient methods is proposed to solve the new objective function. Experimental results on real-world networks show that DMF yields superior performance gain over the state-of-the-art baselines on sparsely labeled networks.

Advances in social networking and communication technologies have witnessed an increasing number of applications where data is not only characterized by rich content information, but also connected with complex relationships representing social roles and dependencies between individuals. To enable knowledge discovery from such networked data, network representation learning (NRL) aims to learn vector representations for network nodes, such that off-the-shelf machine learning algorithms can be directly applied. To date, existing NRL methods either primarily focus on network structure or simply combine node content and topology for learning. We argue that in information networks, information is mainly originated from three sources: (1) homophily, (2) topology structure, and (3) node content. Homophily states social phenomenon where individuals sharing similar attributes (content) tend to be directly connected through local relational ties, while topology structure emphasizes more on global connections. To ensure effective network representation learning, we propose to augment three information sources into one learning objective function, so that the interplay roles between three parties are enforced by requiring the learned network representations (1) being consistent with node content and topology structure, and also (2) following the social homophily constraints in the learned space. Experiments on multi-class node classification demonstrate that the representations learned by the proposed method consistently outperform state-of-the-art NRL methods, especially for very sparsely labeled networks.