The ubiquity of sensors and IoT devices has led to an explosion in data availability in modern agriculture. The large volume and heterogeneity of the data, together with the complexity of data processing requirements, pose huge obstacles for achieving the principles of Findable, Accessible, Interoperable, and Reusable (FAIR). Current data management and analysis paradigms are to a large extent traditional, in which data collecting, curating, integration, loading, storing, sharing and analyzing still involve too much human effort and know-how. The experts, researchers and the farm operators need to understand the data and the whole process of data management pipeline to make full use of the data. The essential problem of the traditional paradigm is the lack of a layer of orchestrational intelligence which can understand, organize and coordinate the data processing utilities to maximize data management and analysis outcome. The emerging reasoning and tool mastering abilities of large language models (LLM) make it a potentially good fit to this position, which helps a shift from the traditional user-driven paradigm to AI-driven paradigm. In this paper, we propose and explore the idea of a LLM based copilot for autonomous agricultural data management and analysis. Based on our previously developed platform of Agricultural Data Management and Analytics (ADMA), we build a proof-of-concept multi-agent system called ADMA Copilot, which can understand user’s intent, makes plans for data processing pipeline and accomplishes tasks automatically, in which three agents: a LLM based controller, an input formatter and an output formatter collaborate together. Different from existing LLM based solutions, by defining a meta-program graph, our work decouples control flow and data flow to enhance the predictability of the behavior of the agents. Experiments demonstrate the intelligence, autonomy, efficacy, efficiency, extensibility, flexibility and privacy of our system. Comparison is also made between ours and existing systems to show the superiority and potential of our system.

Modern agriculture faces grand challenges to meet increased demands for food, fuel, feed, and fiber with population growth under the constraints of climate change and dwindling natural resources. Data innovation is urgently required to secure and improve the productivity, sustainability, and resilience of our agroecosystems. As various sensors and Internet of Things (IoT) instrumentation become more available, affordable, reliable, and stable, it has become possible to conduct data collection, integration, and analysis at multiple temporal and spatial scales, in real-time, and with high resolutions. At the same time, the sheer amount of data poses a great challenge to data storage and analysis, and the de facto data management and analysis practices adopted by scientists have become increasingly inefficient. Additionally, the data generated from different disciplines, such as genomics, phenomics, environment, agronomy, and socioeconomic, can be highly heterogeneous. That is, datasets across disciplines often do not share the same ontology, modality, or format. All of the above make it necessary to design a new data management infrastructure that implements the principles of Findable, Accessible, Interoperable, and Reusable (FAIR). In this paper, we propose Agriculture Data Management and Analytics (ADMA), which satisfies the FAIR principles. Our new data management infrastructure is intelligent by supporting semantic data management across disciplines, interactive by providing various data management/analysis portals such as web GUI, command line, and API, scalable by utilizing the power of high-performance computing (HPC), extensible by allowing users to load their own data analysis tools, trackable by keeping track of different operations on each file, and open by using a rich set of mature open source technologies.