EDBT 2026 Demo / reviewers in the wild / expert
Sangmi Lee Pallickara
dblp:38/1106
· DBLP profile ↗
25ranked-venue papers in the field
0as first author
17since 2021 · last 2025
0000-0001-7012-5528ORCID · verified
Domains — venue-derived; a paper can count in several
Big Data, Cloud & Distributed Data Systems · 20Database Systems & Data Management · 4Data Mining & Knowledge Discovery · 1
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2025 | DeepSalt: Bridging Laboratory and Satellite Spectra Through Domain Adaptation and Knowledge Distillation for Large-Scale Soil Salinity Estimation
Rupasree Dey, Abdul Matin, Everett Lewark, Tanjim Bin Faruk, Andrei Bachinin, Sam Leuthold, M. Francesca Cotrufo, Shrideep Pallickara, Sangmi Lee Pallickara |
IEEE Big Data | 9 |
| 2025 | Scalable Harmonization for Efficient Exploration of Heterogeneous Spatiotemporal Datasets
Tyson O'Leary, Everett Lewark, Federico Larrieu, Nathan Orwick, Paige Hansen, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE Big Data | 6 |
| 2025 | HyperKD: Distilling Cross-Spectral Knowledge in Masked Autoencoders via Inverse Domain Shift with Spatial-Aware Masking and Specialized LossabstractThe proliferation of foundation models, pretrained on large-scale unlabeled datasets, has emerged as an effective approach in creating adaptable and reusable architectures that can be leveraged for various downstream tasks using satellite observations. However, their direct application to hyperspectral remote sensing remains challenging due to inherent spectral disparities and the scarcity of available observations. In this work, we present HyperKD, a novel knowledge distillation framework that enables transferring learned representations from a teacher model into a student model for effective development of a foundation model on hyperspectral images. Unlike typical knowledge distillation frameworks, which use a complex teacher to guide a simpler student, HyperKD enables an inverse form of knowledge transfer across different types of spectral data, guided by a simpler teacher model. Building upon a Masked Autoencoder (MAE) with a Vision Transformer (ViT) backbone, HyperKD distills knowledge from Prithvi (a ViT-based MAE geospatial foundation model trained on lower-dimensional multispectral data) into a student tailored for EnMAP hyperspectral imagery. HyperKD addresses the inverse domain adaptation problem with spectral gaps by introducing a feature-based strategy that includes spectral range-based channel alignment, spatial featureguided masking, and an enhanced loss function tailored for hyperspectral images. HyperKD bridges the substantial spectral domain gap, enabling the effective use of pretrained foundation models for geospatial applications. Extensive experiments show that HyperKD significantly improves representation learning in MAEs, leading to enhanced reconstruction fidelity and more robust performance on downstream tasks such as land cover classification, crop type identification, and soil organic carbon prediction, underpinning the potential of knowledge distillation frameworks in remote sensing analytics with hyperspectral imagery. Abdul Matin, Tanjim Bin Faruk, Shrideep Pallickara, Sangmi Lee Pallickara |
DSAA | 4 |
| 2025 | TerraMAE: Learning Spatial-Spectral Representations from Hyperspectral Earth Observation Data via Adaptive Masked AutoencodersabstractMasked Autoencoders struggle with hyperspectral satellite imagery containing 200+ spectral bands, as uniform masking across all channels obscures critical spatial-spectral relationships. We introduce TerraMAE, which employs an adaptive channel grouping strategy to organize bands into statistically coherent groups with independent masking. Together with a customized loss function, this data-driven grouping strategy enables TerraMAE to learn robust spatial-spectral representations from unlabeled HSI. Experiments demonstrate that TerraMAE significantly outperforms baseline Masked Autoencoder and supervised ResNet-50 on soil texture prediction, achieving 15.7% and 6.6% lower error, respectively. Tanjim Bin Faruk, Abdul Matin, Shrideep Pallickara, Sangmi Lee Pallickara |
SIGSPATIAL/GIS | 4 |
| 2024 | Scrybe: Enabling Programmatic Interfaces for Explorations Over Voluminous Spatiotemporal Data CollectionsabstractThis study focuses on enabling programmatic interfaces to perform exploratory analyses over voluminous data collections. The data we consider can be encoded in diverse formats and managed using diverse data storage frameworks. Our framework, code named Scrybe, manages the competing pulls of expressive computations and the need to manage resource utilization in shared clusters. The framework includes support for differentiated quality of service allowing preferentially higher resource utilization for certain users. We have validated our methodology with voluminous data collections housed in relational, NoSQL/document, and hybrid storage systems. Our performance benchmarks profile several aspects of our methodology, and demonstrate the effectiveness of our methodology. Kassidy Barram, Sangmi Lee Pallickara, Shrideep Pallickara |
BDCAT | 2 |
| 2024 | Magellan: Enabling Effective Search Over Voluminous, High-dimensional Scientific DatasetsabstractAs high-dimensional, voluminous datasets continue to become available, they present opportunities for users to perform richer explorations that lead to insights. Most explorations are however limited by the query semantics enforced by the underlying storage system. This precludes identification of connections that exists within and across datasets. This study describes, MAGELLAN, a system that is designed for richer, iterative explorations that allow users to explore connections within and across datasets. Our methodology combines aspects of ontologies and metadata to support analysis that are domain informed and statistically richer. Our performance benchmarks demonstrate the suitability of our methodology to inform explorations interactively and at scale. Federico Larrieu, Tyson O'Leary, Sangmi Lee Pallickara, Shrideep Pallickara |
BDCAT | 3 |
| 2024 | Periscope: A Framework for Visualizations of Multiresolution Spatiotemporal Data at ScaleabstractThe crux of this study is to support browser-based visualizations of spatiotemporally evolving phenomena. Such phenomena arise in myriad domains spanning terrestrial, oceanic, and atmospheric processes. The data are voluminous, have diverse representational formats and projection systems, and are multivariate. We rely on a novel mix of tiling, caching, compression, perceptual limits, speculative prefetching, and dynamic generation of tiles. Our refinements at the client and server-side work in concert with each other to leverage client-side resources, minimize duplicate processing, and effective prefetching to ensure interactive explorations at scale. Our benchmarks profiled several aspects of our methodology and demonstrate the suitability of our refinements. Everett Lewark, Matthew Young, Paahuni Khandelwal, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE Big Data | 4 |
| 2024 | DeepSoil: A Science-guided Framework for Generating High Precision Soil Moisture Maps by Reconciling Measurement Profiles Across In-situ and Remote Sensing DataabstractSoil moisture plays a critical role in several domains and can be used to inform decision-making in agricultural settings, drought forecasting, forest fire predictions, and water conservation. Soil moisture is measured using in-situ and remote-sensing equipment. Depending on the type of equipment that is used, some challenges must be reconciled, including the density of observations, the measurement precision, and the resolutions at which these measurements are available. In particular, in-situ measurements are high-precision but sparse, while remote sensing measurements benefit from spatial coverage, albeit at lower precision and coarser resolutions. The crux of this study is to produce higher-precision soil moisture estimates at high resolutions (30m). Our methodology combines scientific models, deep networks, topographical characteristics, and information about ambient conditions alongside both in-situ and remote sensing data to accomplish this. Domain science infuses several aspects of our methodology. Our empirical benchmarks profile several aspects and demonstrate that our methodology accounts for spatial variability while accounting for both static (soil properties and elevation) and dynamically varying phenomena to generate accurate, high-precision 30m resolution soil moisture content maps. Paahuni Khandelwal, Sangmi Lee Pallickara, Shrideep Pallickara |
SIGSPATIAL/GIS | 2 |
| 2023 | Rubiks: Rapid Explorations and Summarization over High Dimensional Spatiotemporal DatasetsabstractExponential growth in spatial data volumes have occurred alongside increases in the dimensionality of datasets and the rates at which observations are generated. Rapid summarization and explorations of such datasets are a precursor to several downstream operations including data wrangling, preprocessing, hypothesis formulation, and model construction among others. However, researchers are stymied both by the dimensionality and data volumes that often entail extensive data movements, computation overheads, and I/O. Here, we describe our methodology to support effective summarizations and explorations at scale over arbitrary spatiotemporal scopes, which encapsulate the spatial extents, temporal bounds, or combinations thereof over the data space of interest. Summarizations can be performed over all variables representing the dataspace or subsets specified by the user. We extend the concept of data cubes to encompass spatiotemporal datasets with high-dimensionality and where there might be significant gaps in the data because measurements (or observations) of diverse variables are not synchronized and may occur at diverse rates. We couple our data summarization features with a rapid Choropleth visualizer that allows users to explore spatial variations of diverse measures of interest. We validate these concepts in the context of an Environmental Protection Agency dataset which tracks over 4000 chemical pollutants, presenting in natural water sources across the United States from 1970 onwards. Saptashwa Mitra, Matthew Young, F. Jay Breidt, Sangmi Lee Pallickara, Shrideep Pallickara |
BDCAT | 4 |
| 2023 | A Framework for Profiling Spatial Variability in the Performance of Classification ModelsabstractScientists use models to further their understanding of phenomena and inform decision-making. A confluence of factors has contributed to an exponential increase in spatial data volumes. In this study, we describe our methodology to identify spatial variation in the performance of classification models. Our methodology allows tracking a host of performance measures across different thresholds for the larger, encapsulating spatial area under consideration. Our methodology ensures frugal utilization of resources via a novel validation budgeting scheme that preferentially allocates observations for validations. We complement these efforts with a browser-based, GPU-accelerated visualization scheme that also incorporates support for streaming to assimilate validation results as they become available. Menuka Warushavithana, Kassidy Barram, Caleb Carlson, Saptashwa Mitra, Sudipto Ghosh 0001, F. Jay Breidt, Sangmi Lee Pallickara, Shrideep Pallickara |
BDCAT | 7 |
| 2023 | DISCERN: Leveraging Knowledge Distillation to Generate High Resolution Soil Moisture Estimation from Coarse Satellite DataabstractAccurate estimation of soil moisture is crucial for efficient agricultural management and environmental monitoring. However, the task of predicting soil moisture levels becomes challenging in regions with limited data availability. In this study, we propose a knowledge distillation-based deep learning approach to enhance soil moisture prediction with machine learning apporach using the low resolution but wide coverage soil moisture Active Passive (SMAP) satellite data.Our framework leverages the knowledge distillation, where a high-capacity teacehr model (VGG13) which is pre-traineed on a large dataset (SMAP) and a lightweight student model (ResNet8) which is then trained on sensor-based highly accurate but extremely sparse station data. The student model benefits from the distilled knowledge of the teacher model, acquiring a deeper understanding of the underlying patterns and relationships in the data.The space-efficient student model significantly reduces the inference time with high prediction accuracy and demonstrates the potential benefit to agricultural management, water resource planning, and ecological studies by providing accurate and reliable soil moisture predictions in data-scarce regions. Our findings reveal how to identify performant settings for achieving the best trade-off between accuracy and model complexity. Abdul Matin, Paahuni Khandelwal, Shrideep Pallickara, Sangmi Lee Pallickara |
IEEE Big Data | 4 |
| 2023 | AQUA: A Framework for Spatiotemporal Analysis and Visualizations of Water Quality Data at ScaleabstractSpatia1 data volumes have grown exponentially alongside the proliferation of sensing equipment and networked observational devices. In this study, we describe our framework aQua for performing visualizations and exploration of spatiotemporally evolving phenomena at scale. We validate our ideas in the context of data from the National Hydrology Database (NHD) and the Environmental Protection Agency (EPA) to support longitudinal analysis (53 years of data) for the vast majority of water bodies in the United States. Our methodology addresses issues relating to preserving interactivity, effective analysis, GPU accelerated visualizations, dynamic query generation, and scaling. We consider optimizations and refinements at the server-side, client-side, and how information exchange occurs between the client and server-side. We report both quantitative and qualitative assessments of several aspects of our tool to demonstrate its suitability. Finally, our methodology is broadly applicable to domains where visualization-driven explorations of spatiotemporally evolving phenomena are needed. Matthew Young, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE Big Data | 2 |
| 2022 | Resource Efficient Profiling of Spatial Variability in Performance of Regression ModelsabstractScientists design models to understand phenomena, make predictions, and/or inform decision-making. This study targets models that encapsulate spatially evolving phenomena. Given a model, our objective is to identify the accuracy of the model across all geospatial extents. A scientist may expect these validations to occur at varying spatial resolutions (e.g., states, counties, towns, and census tracts). Assessing a model with all available ground-truth data is infeasible due to the data volumes involved. We propose a framework to assess the performance of models at scale over diverse spatial data collections. Our methodology ensures orchestration of validation workloads while reducing memory strain, alleviating contention, enabling concurrency, and ensuring high throughput. We introduce the notion of a validation budget that represents an upper-bound on the total number of observations that are used to assess the performance of models across spatial extents. The validation budget attempts to capture the distribution characteristics of observations and is informed by multiple sampling strategies. Our design allows us to decouple the validation from the underlying model-fitting libraries to interoperate with models constructed using different libraries and analytical engines; our advanced research prototype currently supports Scikit-learn, PyTorch, and TensorFlow. Caleb Carlson, Menuka Warushavithana, Saptashwa Mitra, Kassidy Barram, Sudipto Ghosh 0001, F. Jay Breidt, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE Big Data | 7 |
| 2022 | Griddle: Effective Query Support over Voluminous Gridded Spatial DatasetsabstractGridded datasets occur in several domains. These datasets comprise (un)structured grid points, where each grid point is characterized by XY(Z) coordinates in a spatial referencing system. The data available at individual grid points are high-dimensional encapsulating multiple variables of interest. This study has two thrusts. The first targets supporting effective management of voluminous gridded datasets while reconciling challenges relating to colocation and dispersion. The second thrust is to support sliding (temporal) window queries over the gridded dataset. Such queries involve sliding a temporal window over the data to identify spatial locations and chronological time points where the specified predicate evaluates to true. Our methodology includes support for a space-efficient data structure for organizing information within the data, query decomposition based on dyadic intervals, support for temporal anchoring, query transformations, and effective evaluation of query predicates. Our empirical benchmarks are conducted on representative voluminous high dimensional datasets such as gridMET (historical meteorological data) and MACA (future climate datasets based on the RCP 8.5 greenhouse gas trajectory). In our benchmarks, our system can handle throughputs of over 3000 multi-predicate sliding window queries per second. Pierce Smith, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE Big Data | 2 |
| 2021 | Distributed Orchestration of Regression Models Over Administrative BoundariesabstractGeospatial data collections are now available in a multiplicity of domains. The accompanying data volumes, variety, and diversity of encoding formats within these collections have all continued to grow. These data offer opportunities to extract patterns, understand phenomena, and inform decision making by fitting models to the data. To ensure accuracy and effectiveness, these models need to be constructed at geospatial extents/scopes that are aligned with the nature of decision-making — administrative boundaries such as census tracts, towns, counties, states etc. This entails construction of a large number of models and orchestrating their accompanying resource requirements (CPU, RAM and I/O) within shared computing clusters. In this study, we describe our methodology to facilitate model construction at scale by substantively alleviating resource requirements while preserving accuracy. Our benchmarks demonstrate the suitability of our methodology. Menuka Warushavithana, Caleb Carlson, Saptashwa Mitra, Daniel Rammer, Mazdak Arabi, F. Jay Breidt, Sangmi Lee Pallickara, Shrideep Pallickara |
BDCAT | 7 |
| 2021 | Glance: A Generative Approach to Interactive Visualization of Voluminous Satellite ImageryabstractChallenges in interactive visualizations over satellite data collections stem primarily from their inherent data volumes. Enabling interactive visualizations of such data results in both processing and I/O (network and disk) on the server side. These are further exacerbated by multiple, concurrent requests issued by different clients. Hotspots may also arise when multiple users are interested in a particular geographical extent. We propose a novel methodology to support interactive visualizations over voluminous satellite imagery. Our system, codenamed Glance, generates models that once installed on the client side, substantially alleviate resource requirements on the server side. Our system dynamically generates imagery during zoom-in operations. Glance also supports image refinements using partial high-resolution information when available. Glance is based broadly on a deep Generative Adversarial Network, and our model is space-efficient to facilitate memory-residency at the clients. We supplement Glance with a module to estimate rendering errors when using the model to generate imagery as opposed to a resource-intensive query-and-retrieve operation to the server. Benchmarks to profile our methodology show substantive improvements in interactivity with up to 23x reduction in time lags without utilizing GPU and 297x-6627x reduction while harnessing GPU. Further, the perceptual quality of the images from our generative model is robust with PSNR values ranging from 32.2-40.5, depending on the scenario and upscale factor. Saptashwa Mitra, Daniel Rammer, Shrideep Pallickara, Sangmi Lee Pallickara |
IEEE BigData | 4 |
| 2021 | Containerization of Model Fitting Workloads over Spatial DatasetsabstractSpatial data volumes have grown exponentially over the past several years. The number of domains that spatial data are extensively leveraged include atmospheric sciences, environmental monitoring, ecological modeling, epidemiology, sociology, commerce, and social media among others. These data are often used to understand phenomena and inform decision-making by fitting models to them. In this study, we present our methodology to fit models at scale over spatial data. Our methodology encompasses segmentation, spatial similarity based on the dataset(s) under consideration, and transfer learning schemes that are informed by the spatial similarity to train models faster while utilizing fewer resources. We consider several model fitting algorithms and execution within containerized environments as we profile the suitability of our methodology. Our benchmarks validate the suitability of our methodology to facilitate faster, resource-efficient training of models over spatial data. Menuka Warushavithana, Saptashwa Mitra, Mazdak Arabi, F. Jay Breidt, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE BigData | 5 |
| 2020 | Iris: Amortized, Resource Efficient Visualizations of Voluminous Spatiotemporal DatasetsabstractThe growth in observational data volumes over the past decade has occurred alongside a need to make sense of the phenomena that underpin them. Visualization is a key component of the data wrangling process that precedes the analyses that informs these insights. The crux of this study is interactive visualizations of spatiotemporal phenomena from voluminous datasets. Spatiotemporal visualizations of voluminous datasets introduce challenges relating to interactivity, overlaying multiple datasets and dynamic feature selection, resource capacity constraints, and scaling. In this study we describe our methodology to address these challenges. We rely on a novel mix of algorithms and systems innovations working in concert to ensure effective apportioning and amortization of workloads and enable interactivity during visualizations. In particular our research prototype, Iris, leverages sketching algorithms, effective query predicate generation and evaluation, avoids performance hotspots, harnesses coprocessors for hardware acceleration, and convolutional neural network based encoders to render visualizations while preserving responsiveness and interactivity. We also report on several empirical benchmarks that demonstrate the suitability of our methodology to preserve interactivity while utilizing resources effectively to scale. Kevin Bruhwiler, Thilina Buddhika, Shrideep Pallickara, Sangmi Lee Pallickara |
BDCAT | 4 |
| 2020 | Concerto: Leveraging Ensembles for Timely, Accurate Model Training Over Voluminous DatasetsabstractAs data volumes increase, there is a pressing need to make sense of the data in a timely fashion. Voluminous datasets are often multidimensional with individual data points representing a vector of features. Data scientists fit models to the data - using all features or a subset thereof - and then use these models to inform their understanding of phenomena or make predictions. The performance of these analytical models is assessed based on their accuracy and ability to generalize on unseen data. Several frameworks exist for drawing insights from voluminous datasets, but have limited scalability (which leads to prolonged training times), poor resource utilization, narrow applicability across problem domains, and insufficient support for combining diverse model fitting algorithms. In this study, we describe our methodology for scalable supervised learning over voluminous datasets. The methodology explores the effect of controlled partitioning of the feature space, as well as how analytical models can be combined to preserve accuracy. Rather than build a single, all-encompassing model, we enable practitioners to construct an ensemble of models that are trained independently in parallel over different portions of the data space. This can provide faster training times and increased prediction accuracy overall; our empirical benchmarks demonstrate the suitability of our approach using real-world data. Walid Budgaga, Matthew Malensek, Sangmi Lee Pallickara, Shrideep Pallickara |
BDCAT | 3 |
| 2020 | Lightweight, Embeddings Based Storage and Model Construction Over Satellite Data CollectionsabstractThere has been a substantial growth in remotely sensed hyperspectral satellite imagery. These data offer opportunities to understand phenomena and inform decision making. The nature of these collections introduces challenges stemming from their volumes, variety, and spatiotemporal resolutions. The crux of this study is to facilitate effective training of deep learning models over satellite data collections. We describe our novel embeddings (multidimensional latent space representations) based approach to effectively support model training, refinement, and inferences. We rigorously explore several aspects relating to embeddings, including their dimensionality, single vs multiple bands, and preservation of inter-band metrics. We also incorporate support for transfer learning over spatiotemporal scopes to address issues relating to cold start and alleviate resource pressure. Our methodology addresses disk, network, CPU/GPU, and accuracy implications of several aspects relating to model construction. Our empirical benchmarks assess the suitability of our methodology using the MODIS and Sentinel-2 satellite data. We demonstrate that our methodology reduces storage requirements by more than 10,000x and reduces model construction times by 75%. Kevin Bruhwiler, Paahuni Khandelwal, Daniel Rammer, Samuel Armstrong, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE BigData | 5 |
| 2019 | Rapid, Progressive Sub-Graph Explorations for Interactive Visual Analytics over Large-Scale Graph DatasetsabstractExploring a voluminous graph dataset visually is a challenging task due to the sheer amount of data and the lack of structure to rely on during the navigation. Indra, our framework for large-scale graph data, provides responsive visual analytics over large-scale graph datasets. In this study, we propose a novel graph indexing scheme that pivots the view of the graph to a hierarchical structure while preserving the semantic importance of vertices within the user's analysis scenario. Indra allows users to compare and track multiple aspects of sub-graphs by supporting linked multi-views and multi-resolution operations such as drill-in and roll-ups. We have performed a set of empirical benchmarks profiling Indra and these demonstrate that several operations are executed with sub-second latency to effectively support interactive visual analytics. Samuel Armstrong, Kevin Bruhwiler, Sangmi Lee Pallickara |
BDCAT | 3 |
| 2018 | Alleviating I/O Inefficiencies to Enable Effective Model Training Over Voluminous, High-Dimensional DatasetsabstractThere has been an exponential growth in data volumes in several domains. Often these voluminous datasets encompass a large number of features. Fitting models to such high-dimensional, voluminous data allows us to understand phenomena and inform decision-making. The analytics process is naturally iterative as scientists explore the set of features, data fitting algorithms, portions of the dataspace, and the particular algorithm's hyperparameters to guide their model-building process. It often takes several model-fitting attempts before one arrives at a satisfactory solution that may then be subjected to further refinements. Each of these model-building attempts is itself time-consuming and dominated by I/O and data movement costs. In this study, we present our methodology for significantly alleviating I/O-induced inefficiencies during model training. Rather than work with the raw data, we generate and work with sketches of the data. Our framework, Fennel, is independent of the libraries or analytical engines preferred by users. Our empirical benchmarks have been performed with datasets from diverse domains (weather, epidemiology, and music) and we profile several aspects of our methodology. Daniel Rammer, Walid Budgaga, Thilina Buddhika, Shrideep Pallickara, Sangmi Lee Pallickara |
IEEE BigData | 5 |
| 2017 | Synopsis: A Distributed Sketch over Voluminous Spatiotemporal Observational StreamsabstractNetworked observational devices have proliferated in recent years, contributing to voluminous data streams from a variety of sources and problem domains. These streams often have a spatiotemporal component and include multidimensional features of interest. Processing such data in an offline fashion using batch systems or data warehouses is costly from both a storage and computational standpoint, and in many situations the insights derived from the data streams are useful only if they are timely. In this study, we propose SYNOPSIS, an online, distributed sketch that is constructed from voluminous spatiotemporal data streams. The sketch summarizes feature values and inter-feature relationships in memory to facilitate real-time query evaluations and to serve as input to computations expressed using analytical engines. As the data streams evolve, SYNOPSIS performs targeted dynamic scaling to ensure high accuracy and effective resource utilization. We evaluate our system in the context of two real-world spatiotemporal datasets and demonstrate its efficacy in both scalability and query evaluations. Thilina Buddhika, Matthew Malensek, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE Trans. Knowl. Data Eng. | 3 |
| 2016 | Network analysis for identifying and characterizing disease outbreak influence from voluminous epidemiology dataabstractPlanning for large-scale epidemiological outbreaks in livestock populations often involves executing compute-intensive disease spread simulations. To capture the probabilities of various outcomes, these simulations are executed several times over a collection of representative input scenarios, producing voluminous data. The resulting datasets contain valuable insights, including sequences of events that lead to extreme outbreaks. However, discovering and leveraging such information is also computationally expensive. In this study, we propose a distributed approach for analyzing voluminous epidemiology data to locate and classify the most influential entities in a disease outbreak. Using our disease transmission network (DTN), planners or analysts can isolate entities that have a disproportionate effect on epidemiological outcomes, enabling effective allocation of limited resources such as vaccinations and field personnel. We use a representative dataset to verify our approach, including identification of influential entities and creation of machine learning models for accurate classifications that generalize to other datasets. Naman Shah 0001, Harshil Shah, Matthew Malensek, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE BigData | 4 |
| 2016 | Analytic Queries over Geospatial Time-Series Data Using Distributed Hash TablesabstractAs remote sensing equipment and networked observational devices continue to proliferate, their corresponding data volumes have surpassed the storage and processing capabilities of commodity computing hardware. This trend has led to the development of distributed storage frameworks that incrementally scale out by assimilating resources as necessary. While challenging in its own right, storing and managing voluminous datasets is only the precursor to a broader field of research: extracting insights, relationships, and models from the underlying datasets. The focus of this study is twofold:exploratoryandpredictiveanalytics over voluminous, multidimensional datasets in a distributed environment. Both of these types of analysis represent a higher-level abstraction over standard query semantics; rather than indexing every discrete value for subsequent retrieval, our framework autonomously learns the relationships and interactions between dimensions in the dataset and makes the information readily available to users. This functionality includes statistical synopses, correlation analysis, hypothesis testing, probabilistic structures, and predictive models that not only enable the discovery of nuanced relationships between dimensions, but also allow future events and trends to be predicted. The algorithms presented in this work were evaluated empirically on a real-world geospatial time-series dataset in a production environment, and are broadly applicable across other storage frameworks. Matthew Malensek, Sangmi Lee Pallickara, Shrideep Pallickara |
IEEE Trans. Knowl. Data Eng. | 2 |