EDBT 2026 Demo / reviewers in the wild / expert
Yefeng Zheng 0001
dblp:44/6510
· DBLP profile ↗
34ranked-venue papers in the field
5as first author
28since 2021 · last 2026
0000-0003-2195-2847ORCID · verified
Domains — venue-derived; a paper can count in several
Information Retrieval & Web Search · 14Data Mining & Knowledge Discovery · 8Other / Interdisciplinary · 6 (5 first)Database Systems & Data Management · 4Knowledge Engineering, Semantic Web & Information Systems · 2
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | Medusa: Cross-Modal Transferable Adversarial Attacks on Multimodal Medical Retrieval-Augmented GenerationabstractWith the rapid advancement of retrieval-augmented vision-language models, multimodal medical retrieval-augmented generation (MMed-RAG) systems are increasingly adopted in clinical decision support. These systems enhance medical applications by performing cross-modal retrieval to integrate relevant visual and textual evidence for tasks, e.g., report generation and disease diagnosis. However, their complex architecture also introduces underexplored adversarial vulnerabilities, particularly via visual input perturbations. In this paper, we propose Medusa, a novel framework for crafting cross-modal transferable adversarial attacks on MMed-RAG systems under a black-box setting. Specifically, Medusa formulates the attack as a perturbation optimization problem, leveraging a multi-positive InfoNCE loss (MPIL) to align adversarial visual embeddings with medically plausible but malicious textual targets, thereby hijacking the retrieval process. To enhance transferability, we adopt a surrogate model ensemble and design a dual-loop optimization strategy augmented with invariant risk minimization (IRM). Extensive experiments on two real-world medical tasks, including medical report generation and disease diagnosis, demonstrate that Medusa achieves over 90% average attack success rate across various generation models and retrievers under appropriate parameter configuration, while remaining robust against four mainstream defenses, outperforming state-of-the-art baselines. Our results reveal critical vulnerabilities in the MMed-RAG systems and highlight the necessity of robustness benchmarking in safety-critical medical applications. The code and data are available at https://github.com/yiliucs/MMed-RAG-Attack. © 2026 Owner/Author. Yingjia Shang, Yi Liu 0057, Wenfang Sun, Yefeng Zheng 0001 |
KDD (1) | 7 |
| 2025 | How much Medical Knowledge do LLMs have? An Evaluation of Medical Knowledge Coverage for LLMsabstractPrevious evaluation frameworks for large language models (LLMs) have mostly relied on existing question-answering benchmarks, which are primarily task-oriented rather than knowledge-oriented.In the medical domain, however, the effective deployment of LLMs necessitates a thorough evaluation of their medical knowledge coverage.To this end, we propose a systematic evaluation framework, MedKGEval, to assess the coverage of medical knowledge in LLMs through the lens of medical knowledge graphs (KGs).MedKGEval transforms various levels of knowledge (entity-level, relation-level, and subgraph-level) from the medical KG into distinct groups of question-answer pairs, which serve as comprehensive evaluation benchmarks.In addition to traditional task-oriented evaluations, MedKGEval introduces a novel knowledge-oriented evaluation approach that encompasses the assessment of knowledge coverage across entities, relations, and triples.This multi-aspect evaluation approach allows for a more nuanced understanding of LLMs' knowledge coverage in the medical context.Using these benchmarks, we conduct a systematic evaluation of 11 LLMs from multiple perspectives, revealing insights into their strengths and weaknesses in medical knowledge memorization and reasoning. Zhenxi Lin, Yefeng Zheng 0001, Xian Wu 0001 |
WWW | 3 |
| 2024 | Editing Factual Knowledge and Explanatory Ability of Medical Large Language ModelsabstractModel editing aims to precisely alter the behaviors of large language models (LLMs) in relation to specific knowledge, while leaving unrelated knowledge intact. This approach has proven effective in addressing issues of hallucination and outdated information in LLMs. However, the potential of using model editing to modify knowledge in the medical field remains largely unexplored, even though resolving hallucination is a pressing need in this area. Our observations indicate that current methods face significant challenges in dealing with specialized and complex knowledge in medical domain. Therefore, we propose MedLaSA, a novel Layer-wise Scalable Adapter strategy for medical model editing. MedLaSA harnesses the strengths of both adding extra parameters and locate-then-edit methods for medical model editing. We utilize causal tracing to identify the association of knowledge in neurons across different layers, and generate a corresponding scale set from the association value for each piece of knowledge. Subsequently, we incorporate scalable adapters into the dense layers of LLMs. These adapters are assigned scaling values based on the corresponding specific knowledge, which allows for the adjustment of the adapter's weight and rank. The more similar the content, the more consistent the scale between them. This ensures precise editing of semantically identical knowledge while avoiding impact on unrelated knowledge. To evaluate the editing impact on the behaviours of LLMs, we propose two model editing studies for medical domain: (1) editing factual knowledge for medical specialization and (2) editing the explanatory ability for complex knowledge. We build two novel medical benchmarking datasets and introduce a series of challenging and comprehensive metrics. Extensive experiments on medical LLMs demonstrate the editing efficiency of MedLaSA, without affecting unrelated knowledge. Derong Xu, Zhihong Zhu 0001, Zhenxi Lin, Qidong Liu 0002, Xian Wu 0001, Tong Xu 0001, Yuyang Ye 0002, Xiangyu Zhao 0001, Enhong Chen, Yefeng Zheng 0001 |
CIKM | 12 |
| 2024 | When MOE Meets LLMs: Parameter Efficient Fine-tuning for Multi-task Medical ApplicationsabstractThe recent surge in Large Language Models (LLMs) has garnered significant attention across numerous fields. Fine-tuning is often required to fit general LLMs for a specific domain, like the web-based healthcare system. However, two problems arise during fine-tuning LLMs for medical applications. One is the task variety problem, which involves distinct tasks in real-world medical scenarios. The variety often leads to sub-optimal fine-tuning for data imbalance and seesaw problems. Besides, the large amount of parameters in LLMs leads to huge time and computation consumption by fine-tuning. To address these two problems, we propose a novel parameter efficient fine-tuning framework for multi-task medical applications, dubbed as MOELoRA. The designed framework aims to absorb both the benefits of mixture-of-expert (MOE) for multi-task learning and low-rank adaptation (LoRA) for parameter efficient fine-tuning. For unifying MOE and LoRA, we devise multiple experts as the trainable parameters, where each expert consists of a pair of low-rank matrices to retain the small size of trainable parameters. Then, a task-motivated gate function for all MOELoRA layers is proposed, which can control the contributions of each expert and produce distinct parameters for various tasks. We conduct experiments on a multi-task medical dataset, indicating MOELoRA outperforms the existing parameter efficient fine-tuning methods. The code is available online. Qidong Liu 0002, Xian Wu 0001, Xiangyu Zhao 0001, Yuanshao Zhu, Derong Xu, Feng Tian 0002, Yefeng Zheng 0001 |
SIGIR | 7 |
| 2024 | Causally Debiased Time-aware Recommendation
Lei Wang 0198, Chen Ma 0001, Xian Wu 0001, Zhaopeng Qiu, Yefeng Zheng 0001, Xu Chen 0017 |
WWW | 5 |
| 2024 | GraphLeak: Patient Record Leakage through Gradients with Knowledge GraphabstractIn real clinics, the medical data are scattered over multiple hospitals. Due to security and privacy concerns, it is almost impossible to gather all the data together and train a unified model. Therefore, multi-node machine learning systems are currently the mainstream form of model training in healthcare systems. Nevertheless, distributed training relies on the exchange of gradients, which has been proved under the risk of privacy leakage. That means malicious attackers can restore the user's sensitive data by utilizing the publicly shared gradients, which is a serious problem for extremely private data such as Electronic Healthcare Records (EHRs). The performance of the previous gradient attack method will drop rapidly when the batch size of training data increases, which makes it less threatening in practice. However, in this paper, we found in the medical domain, by leveraging prior knowledge like the medical knowledge graph, the leakage risk can be significantly amplified. In particular, we present GraphLeak, which incorporates the medical knowledge graph in gradient leakage attacks. GraphLeak can improve the restoration effect of gradient attacks even under large batches of data. We conduct experimental verification on electronic healthcare record datasets, including eICU and MIMIC-III. Our method has achieved state-of-the-art attack performance compared with previous works. Code is available at https://github.com/anonymous4ai/GraphLeak. Xi Sheryl Zhang, Weifan Guan, Zhaopeng Qiu, Jian Cheng 0001, Xian Wu 0001, Yefeng Zheng 0001 |
WWW | 7 |
| 2024 | Wearable-based behaviour interpolation for semi-supervised human activity recognitionabstractWhile traditional feature engineering for Human Activity Recognition (HAR) involves a trial-and-error process, deep learning has emerged as a preferred method for high-level representations of sensor-based human activities. However, most deep learning-based HAR requires a large amount of labelled data and extracting HAR features from unlabelled data for effective deep learning training remains challenging. We, therefore, introduce a deep semi-supervised HAR approach, MixHAR, which concurrently uses labelled and unlabelled activities. Our MixHAR employs a linear interpolation mechanism to blend labelled and unlabelled activities while addressing both inter- and intra-activity variability. A unique challenge identified is the activity-intrusion problem during mixing, for which we propose a mixing calibration mechanism to mitigate it in the feature embedding space. Additionally, we rigorously explored and evaluated the five conventional/popular deep semi-supervised technologies on HAR, acting as the benchmark of deep semi-supervised HAR. Our results demonstrate that MixHAR significantly improves performance, underscoring the potential of deep semi-supervised techniques in HAR. Haoran Duan 0001, Varun Ojha 0001, Shizheng Wang, Yawen Huang, Yang Long 0001, Rajiv Ranjan 0001, Yefeng Zheng 0001 |
Inf. Sci. | 8 |
| 2024 | Acquiring New Knowledge Without Losing Old Ones for Effective Continual Dialogue Policy LearningabstractDialogue policy learning is the core decision-making module of a task-oriented dialogue system. Its primary objective is to assist users to achieve their goals effectively in as few turns as possible. A practical dialogue-policy agent must be able to expand its knowledge to handle new scenarios efficiently without affecting its performance. Nevertheless, when adapting to new tasks, existing dialogue-policy agents often fail to retain their existing (old) knowledge. To overcome this predicament, we propose a novel continual dialogue-policy model which tackles the issues of “not forgetting the old” and “acquiring the new” from three different aspects: (1) For effective old-task preservation, we introduce the forgetting preventor which uses a behavior cloning technique to force the agent to take actions consistent with the replayed experience to retain the policy trained on historic tasks. (2) For new-task acquisition, we introduce the adaption accelerator which employs an invariant risk minimization mechanism to produce a stable policy predictor to avoid spurious corrections in training data. (3) For reducing the storage cost of the replayed experience, we introduce a replay manager which helps regularly clean up the old data. The effectiveness of the proposed model is evaluated both theoretically and experimentally and demonstrated favorable results. Yunyan Zhang, Yifan Yang 0008, Yefeng Zheng 0001, Kam-Fai Wong |
IEEE Trans. Knowl. Data Eng. | 4 |
| 2024 | Distributional Fairness-aware RecommendationabstractFairness has been gradually recognized as a significant problem in the recommendation domain. Previous models usually achieve fairness by reducing the average performance gap between different user groups. However, the average performance may not sufficiently represent all the characteristics of the performances in a user group. Thus, equivalent average performance may not mean the recommender model is fair, for example, the variance of the performances can be different. To alleviate this problem, in this article, we define a novel type of fairness, where we require that the performance distributions across different user groups should be similar. We prove that with the same performance distribution, the numerical characteristics of the group performance, including the expectation, variance, and any higher-order moment, are also the same. To achieve distributional fairness, we propose a generative and adversarial training framework. Specifically, we regard the recommender model as the generator to compute the performance for each user in different groups, and then we deploy a discriminator to judge which group the performance is drawn from. By iteratively optimizing the generator and the discriminator, we can theoretically prove that the optimal generator (the recommender model) can indeed lead to the equivalent performance distributions. To smooth the adversarial training process, we propose a novel dual curriculum learning strategy for optimal scheduling of training samples. Additionally, we tailor our framework to better suit top-N recommendation tasks by incorporating softened ranking metrics as measures of performance discrepancies. We conduct extensive experiments based on real-world datasets to demonstrate the effectiveness of our model. Hao Yang 0045, Xian Wu 0001, Zhaopeng Qiu, Yefeng Zheng 0001, Xu Chen 0017 |
ACM Trans. Inf. Syst. | 4 |
| 2023 | Cross-Modal Contrastive Learning for Event Extraction
Shuo Wang 0008, Meizhi Ju, Yunyan Zhang, Yefeng Zheng 0001, Meng Wang 0001, Guilin Qi |
DASFAA (3) | 4 |
| 2023 | Distributionally Robust Sequential RecommnedationabstractModeling user sequential behaviors have been demonstrated to be effective in promoting the recommendation performance. While previous work has achieved remarkable successes, they mostly assume that the training and testing distributions are consistent, which may contradict with the diverse and complex user preferences, and limit the recommendation performance in real-world scenarios. To alleviate this problem, in this paper, we propose a robust sequential recommender framework to overcome the potential distribution shift between the training and testing sets. In specific, we firstly simulate different training distributions via sample reweighting. Then, we minimize the largest loss induced by these distributions to optimize the 'worst-case' loss for improving the model robustness. Considering that there can be too many sample weights, which may introduce too much flexibility and be hard to optimize, we cluster the training samples based on both hard and soft strategies, and assign each cluster with a unified weight. At last, we analyze our framework by presenting the generalization error bound of the above minimax objective, which help us to better understand the proposed framework from the theoretical perspective. We conduct extensive experiments based on three real-world datasets to demonstrate the effectiveness of our proposed framework. To reproduce our experiments and promote this research direction, we have released our project at https://anonymousrsr.github.io/RSR/. Rui Zhou 0025, Xian Wu 0001, Zhaopeng Qiu, Yefeng Zheng 0001, Xu Chen 0017 |
SIGIR | 4 |
| 2023 | Exploring Social Media for Early Detection of Depression in COVID-19 PatientsabstractThe COVID-19 pandemic has caused substantial damage to global health. Even though three years have passed, the world continues to struggle with the virus. Concerns are growing about the impact of COVID-19 on the mental health of infected individuals, who are more likely to experience depression, which can have long-lasting consequences for both the affected individuals and the world. Detection and intervention at an early stage can reduce the risk of depression in COVID-19 patients. In this paper, we investigated the relationship between COVID-19 infection and depression through social media analysis. Firstly, we managed a dataset of COVID-19 patients that contains information about their social media activity both before and after infection. Secondly, We conducted an extensive analysis of this dataset to investigate the characteristic of COVID-19 patients with a higher risk of depression. Thirdly, we proposed a deep neural network for early prediction of depression risk. This model considers daily mood swings as a psychiatric signal and incorporates textual and emotional characteristics via knowledge distillation. Experimental results demonstrate that our proposed framework outperforms baselines in detecting depression risk, with an AUROC of 0.9317 and an AUPRC of 0.8116. Our model has the potential to enable public health organizations to initiate prompt intervention with high-risk patients. Jiageng Wu, Xian Wu 0001, Yining Hua, Shixu Lin, Yefeng Zheng 0001, Jie Yang 0039 |
WWW | 5 |
| 2023 | Probing the Impacts of Visual Context in Multimodal Entity AlignmentabstractAbstract We study the problem of multimodal embedding-based entity alignment (EA) between different knowledge graphs. Recent works have attempted to incorporate images (visual context) to address EA in a multimodal view. While the benefits of multimodal information have been observed, its negative impacts are non-negligible as injecting images without constraints brings much noise. It also remains unknown under what circumstances or to what extent visual context is truly helpful to the task. In this work, we propose to learn entity representations from graph structures and visual context, and combine feature similarities to find alignments at the output level. On top of this, we explore a mechanism which utilizes classification techniques and entity types to remove potentially un-helpful images (visual noises) during alignment learning and inference. We conduct extensive experiments to examine this mechanism and provide thorough analysis about impacts of the visual modality on EA. Yinghui Shi, Zhenxi Lin, Yefeng Zheng 0001 |
Data Sci. Eng. | 6 |
| 2022 | MCSCSet: A Specialist-annotated Dataset for Medical-domain Chinese Spelling CorrectionabstractChinese Spelling Correction (CSC) is gaining increasing attention in recent years. Despite its extensive use in many applications, such as search engine and optical character recognition system, little has been explored in medical scenarios in which complex and uncommon medical entities are easily misspelled. Correcting the misspellings of medical entities is arguably more difficult than those in the open domain due to its requirements of specific domain knowledge. In this work, we define the task of Medical-domain Chinese Spelling Correction (MCSC) and propose MCSCSet, a large-scale specialist-annotated dataset that contains about 200k samples. In contrast to existing open-domain CSC datasets, MCSCSet involves: i) extensive real-world medical queries collected from Tencent Yidian, ii) corresponding misspelled sentences manually annotated by medical specialists. Our work further offers a medical-domain confusion set consisting of the common error-prone characters in medicine and their corresponding misspellings. Extensive empirical studies have shown significant gaps between the open-domain and medical-domain spelling correction, highlighting the need to develop high-quality datasets that allow for CSC in specific domains. Moreover, our work benchmarks several representative methods, establishing baselines for future work. Wangjie Jiang, Zhihao Ye, Zijing Ou, Ruihui Zhao, Jianguang Zheng, Yi Liu 0057, Bang Liu 0003, Siheng Li, Yujiu Yang 0001, Yefeng Zheng 0001 |
CIKM | 10 |
| 2022 | Leveraging Multiple Types of Domain Knowledge for Safe and Effective Drug RecommendationabstractPredicting drug combinations according to patients' electronic health records is an essential task in intelligent healthcare systems, which can assist clinicians in ordering safe and effective prescriptions. However, existing work either missed/underutilized the important information lying in the drug molecule structure in drug encoding or has insufficient control over Drug-Drug Interactions (DDIs) rates within the predictions. To address these limitations, we propose CSEDrug, which enhances the drug encoding and DDIs controlling by leveraging multi-faceted drug knowledge, including molecule structures of drugs, Synergistic DDIs (SDDIs), and Antagonistic DDIs (ADDIs). We integrate these types of knowledge into CSEDrug by a graph-based drug encoder and multiple loss functions, including a novel triplet learning loss and a comprehensive DDI controllable loss. We evaluate the performance of CSEDrug in terms of accuracy, effectiveness, and safety on the public MIMIC-III dataset. The experimental results demonstrate that CSEDrug outperforms several state-of-the-art methods and achieves a 2.93% and a 2.77% increase in the Jaccard similarity scores and F1 scores, meanwhile, a 0.68% reduction of the ADDI rate (safer drug combinations), and 0.69% improvement of the SDDI rate (more effective drug combinations). Jialun Wu, Buyue Qian, Yang Li 0139, Zeyu Gao 0001, Meizhi Ju, Yifan Yang 0008, Yefeng Zheng 0001, Tieliang Gong, Chen Li 0011, Xianli Zhang |
CIKM | 7 |
| 2022 | InDISP: An Interpretable Model for Dynamic Illness Severity Prediction
Meng Wang 0009, Yifan Yang 0008, Yefeng Zheng 0001, Sen Wang 0001 |
DASFAA (2) | 5 |
| 2022 | Tell Me How to Survey: Literature Review Made Simple with Automatic Reading Path GenerationabstractRecent years have witnessed the dramatic growth of paper volumes with plenty of new research papers published every day, especially in the area of computer science. How to glean papers worth reading from the massive literature to do a quick survey or keep up with the latest advancement about a specific research topic has become a challenging task. Existing academic search engines return relevant papers by individually calculating the relevance between each paper and query. However, such systems usually omit the prerequisite chains of a research topic and cannot form a meaningful reading path. In this paper, we introduce a new task named Reading Path Generation (RPG) which aims at automatically producing a path of papers to read for a given query. To serve as a research benchmark, we further propose SurveyBank, a dataset consisting of large quantities of survey papers in the field of computer science as well as their citation relationships. Furthermore, we propose a graph-optimization-based approach for reading path generation which takes the relationship between papers into account. Extensive evaluations demonstrate that our approach outperforms other baselines. A real-time Reading Path Generation (RePaGer) system has been also implemented with our designed model. Our source code and SurveyBank dataset can be found here11https://github.com/JiayuanDing100/Reading-Path-Generation. Jiayuan Ding, Tong Xiang, Zijing Ou, Wangyang Zuo, Ruihui Zhao, Chenghua Lin 0002, Yefeng Zheng 0001, Bang Liu 0003 |
ICDE | 7 |
| 2022 | Contractible Regularization for Federated Learning on Non-IID DataabstractIn the medical domain, gathering all data and training a global supervised model is very difficult due to scattered data from different hospitals and security and privacy concerns. In recent years, several federated learning models have been proposed for training over isolated data. These models usually employ a client-server framework: 1) train local models on clients in parallel; 2) aggregate local models on the server to produce a global one. By iterating the above two steps, federated learning aims to approximate the performance of a model centrally trained on data. However, due to the non-IID data distribution issue, local models could deviate from the optimal model resulting in a biased aggregated global model. To address this problem, we propose a contractible regularization (ConTre) to act on the local model’s latent space. On each client, we first project the input data into a latent space and then pose regularization to avoid converging too fast to bad local optima. The proposed regularization can be easily integrated into existing federated learning frameworks without bringing in additional parameters. According to experimental results on multiple natural and medical image datasets, the proposed ConTre can significantly improve the performance of various federated learning frameworks. Our code is available at https://github.com/czifan/ConTre.pytorch. Zifan Chen, Xian Wu 0001, Li Zhang 0047, Jie Zhao 0009, Yangtian Yan, Yefeng Zheng 0001 |
ICDM | 7 |
| 2022 | Learning Representations from Local to Global for Fine-grained Patient Similarity Measuring in Intensive Care UnitabstractPatient similarity measurement is an essential step in discovering clinically meaningful subgroups and building case retrieval systems. Most existing studies implement this procedure using similarity measurement algorithms on the multivariate clinical time-series (input space) or the low-dimensional patient representation (representation space) learned by a representation learning model. However, they either suffer from the adverse effects of irrelevant variables in the data or fail to assess the fine-grained similarity underneath the disease progress. In this paper, we propose a method to measure more fine-grained patient similarity in the state space, where each patient is represented by a series of state representations that reveal the dynamic health status. We discuss three desiderata, including stability, personality, and interpretability, for the state representations, and on this basis, develop a supervised predictive model that learns good state representations for identifying similar patients and predicting patient outcomes. Experimental results on the publicly available dataset MIMIC-III show that our method offers a promising direction for precisely identifying similar patients at the state trajectory level, as well as accurately predicting outcomes. Xianli Zhang, Buyue Qian, Yang Li 0139, Zeyu Gao 0001, Chong Guan, Renzhen Wang, Yefeng Zheng 0001, Hansen Zheng, Chen Li 0011 |
ICDM | 7 |
| 2022 | Medical Symptom Detection in Intelligent Pre-Consultation Using Bi-directional Hard-Negative Noise Contrastive EstimationabstractLeveraging artificial intelligence (AI) techniques in medical applications is helping our world to deal with the shortage of healthcare workers and improve the efficiency and productivity of healthcare delivery. Intelligent pre-consultation (IPC) is a relatively new application deployed on mobile terminals for collecting patient's information before a face-to-face consultation. It takes advantages of state-of-the-art machine learning techniques to assist doctors on clinical decision-making. One of key functions of IPC is to detect medical symptoms from patient queries. By extracting symptoms from patient queries, IPC is able to collect more information on patient's health status by asking symptom-related questions. All collected information will be summarized as a medical record for doctors to make clinical decision. This saves a great deal of time for both doctors and patients. Detecting symptoms from patient's query is challenging, as most patients lack medical background and often tend to use colloquial language to describe their symptoms. In this work, we formulate symptom detection as a retrieval problem and propose a bi-directional hard-negative enforced noise contrastive estimation method (Bi-hardNCE) to tackle the symptom detection problem. Bi-hardNCE has both forward contrastive estimation and backward contrastive estimation, which forces model to distinguish the true symptom from negative symptoms and meanwhile distinguish true query from negative queries. To include more informative negatives, our Bi-hardNCE adopts a hard-negative mining strategy and a false-negative eliminating strategy, which achieved a significant improvement on performance. Our proposed model outperforms commonly used retrieval models by a large margin. Jichao Sun, Xueqi Ding, Yefeng Zheng 0001 |
KDD | 5 |
| 2022 | CLINER: Clinical Interrogation Named Entity Recognition
Tianyang Cao, Yifan Yang 0008, Yunyan Zhang, Xi Chen 0003, Baobao Chang, Zhifang Sui, Ruihui Zhao, Yefeng Zheng 0001, Bang Liu 0003 |
KSEM (2) | 10 |
| 2022 | QEN: Applicable Taxonomy Completion via Evaluating Full Taxonomic RelationsabstractTaxonomy is a fundamental type of knowledge graph for a wide range of web applications like searching and recommendation systems. To keep a taxonomy automatically updated with the latest concepts, the taxonomy completion task matches a pair of proper hypernym and hyponym in the original taxonomy with the new concept as its parent and child. Previous solutions utilize term embeddings as input and only evaluate the parent-child relations between the new concept and the hypernym-hyponym pair. Such methods ignore the important sibling relations, and are not applicable in reality since term embeddings are not available for the latest concepts. They also suffer from the relational noise of the “pseudo-leaf” node, which is a null node acting as a node’s hyponym to enable the new concept to be a leaf node. To tackle the above drawbacks, we propose the Quadruple Evaluation Network (QEN), a novel taxonomy completion framework that utilizes easily accessible term descriptions as input, and applies pretrained language model and code attention for accurate inference while reducing online computation. QEN evaluates both parent-child and sibling relations to both enhance the accuracy and reduce the noise brought by pseudo-leaf. Extensive experiments on three real-world datasets in different domains with different sizes and term description sources prove the effectiveness and robustness of QEN on overall performance and especially the performance for adding non-leaf nodes, which largely surpasses previous methods and achieves the new state-of-the-art of the task.1 Suyuchen Wang, Ruihui Zhao, Yefeng Zheng 0001, Bang Liu 0003 |
WWW | 3 |
| 2021 | PRASEMap: A Probabilistic Reasoning and Semantic Embedding based Knowledge Graph Alignment SystemabstractKnowledge Graph (KG) alignment aims at finding equivalent entities and relations (i.e., mappings) between two KGs. The existing approaches utilize either reasoning-based or semantic embedding-based techniques, but few studies explore their combination. In this demonstration, we present PRASEMap, an unsupervised KG alignment system that iteratively computes the Mappings with both Probabilistic Reasoning (PR) And Semantic Embedding (SE) techniques. PRASEMap can support various embedding-based KG alignment approaches as the SE module, and it also enables easy human computer interaction that additionally provides an option for users to feed the mapping annotations back to the system for better results. The demonstration showcases these features via a stand-alone Web application with user friendly interfaces. The demo is available at https://prasemap.qizhy.com. Jiaoyan Chen 0001, Xi Chen 0003, Yefeng Zheng 0001 |
CIKM | 5 |
| 2021 | Towards Interpretability and Personalization: A Predictive Framework for Clinical Time-series AnalysisabstractClinical time-series is receiving long-term attention in data mining and machine learning communities and has boosted a variety of data-driven applications. Identifying similar patients or subgroups from clinical time-series is an essential step to design tailored treatments in clinical practice. However, most of the existing methods are either purely unsupervised that tend to neglect the patient outcome information or cannot generate personalized patient representation through supervised learning, thus may fail to identify ‘truly similar patients’ (i.e., patients who similar in both outcomes and individual outcome-related clinical variables). To tackle these limitations, we propose a novel predictive clinical time-series analysis framework. Specifically, our framework uses task-specific information to rule out the task-irrelevant factors in each patient data individually and generates the contribution scores that reveal the factors’ importance for the patient outcome. Then a patient representation construction method is proposed to generate task-related and personalized representations by combining remained factors and their contribution scores. At last, similarity measurement or cluster analysis can be conducted. We evaluate our framework on three real-world clinical time-series datasets, empirically demonstrate that our framework achieves improvements in prediction performance, similarity measurement, and clustering, thus potentially benefiting patient-similarity-based precision medicine applications. Yang Li 0139, Xianli Zhang, Buyue Qian, Zeyu Gao 0001, Chong Guan, Yefeng Zheng 0001, Hansen Zheng, Fenglang Wu, Chen Li 0011 |
ICDM | 6 |
| 2021 | Lifelong Learning Based Disease Diagnosis on Clinical Notes
Zifeng Wang 0008, Yifan Yang 0006, Rui Wen 0001, Xi Chen 0003, Shao-Lun Huang, Yefeng Zheng 0001 |
PAKDD (1) | 6 |
| 2021 | Improving Short Text Classification Using Context-Sensitive Representations and Content-Aware Extended Topic Knowledge
Zhihao Ye, Rui Wen 0001, Xi Chen 0003, Zhiyong Li 0001, Ke Nai, Yefeng Zheng 0001 |
PAKDD (2) | 8 |
| 2021 | Online Disease Diagnosis with Inductive Heterogeneous Graph Convolutional NetworksabstractWe propose a Healthcare Graph Convolutional Network (HealGCN) to offer disease self-diagnosis service for online users based on Electronic Healthcare Records (EHRs). Two main challenges are focused in this paper for online disease diagnosis: (1) serving cold-start users via graph convolutional networks and (2) handling scarce clinical description via a symptom retrieval system. To this end, we first organize the EHR data into a heterogeneous graph that is capable of modeling complex interactions among users, symptoms and diseases, and tailor the graph representation learning towards disease diagnosis with an inductive learning paradigm. Then, we build a disease self-diagnosis system with a corresponding EHR Graph-based Symptom Retrieval System (GraphRet) that can search and provide a list of relevant alternative symptoms by tracing the predefined meta-paths. GraphRet helps enrich the seed symptom set through the EHR graph when confronting users with scarce descriptions, hence yield better diagnosis accuracy. At last, we validate the superiority of our model on a large-scale EHR dataset. Zifeng Wang 0008, Rui Wen 0001, Xi Chen 0003, Shilei Cao 0001, Shao-Lun Huang, Buyue Qian, Yefeng Zheng 0001 |
WWW | 7 |
| 2021 | Enquire One's Parent and Child Before Decision: Fully Exploit Hierarchical Structure for Self-Supervised Taxonomy ExpansionabstractTaxonomy is a hierarchically structured knowledge graph that plays a crucial role in machine intelligence. The taxonomy expansion task aims to find a position for a new term in an existing taxonomy to capture the emerging knowledge in the world and keep the taxonomy dynamically updated. Previous taxonomy expansion solutions neglect valuable information brought by the hierarchical structure and evaluate the correctness of merely an added edge, which downgrade the problem to node-pair scoring or mini-path classification. In this paper, we propose the Hierarchy Expansion Framework (HEF), which fully exploits the hierarchical structure’s properties to maximize the coherence of expanded taxonomy. HEF makes use of taxonomy’s hierarchical structure in multiple aspects: i) HEF utilizes subtrees containing most relevant nodes as self-supervision data for a complete comparison of parental and sibling relations; ii) HEF adopts a coherence modeling module to evaluate the coherence of a taxonomy’s subtree by integrating hypernymy relation detection and several tree-exclusive features; iii) HEF introduces the Fitting Score for position selection, which explicitly evaluates both path and level selections and takes full advantage of parental relations to interchange information for disambiguation and self-correction. Extensive experiments show that by better exploiting the hierarchical structure and optimizing taxonomy’s coherence, HEF vastly surpasses the prior state-of-the-art on three benchmark datasets by an average improvement of 46.7% in accuracy and 32.3% in mean reciprocal rank. Suyuchen Wang, Ruihui Zhao, Xi Chen 0003, Yefeng Zheng 0001, Bang Liu 0003 |
WWW | 4 |
| 2020 | INPREM: An Interpretable and Trustworthy Predictive Model for HealthcareabstractBuilding a predictive model based on historical Electronic Health Records (EHRs) for personalized healthcare has become an active research area. Benefiting from the powerful ability of feature extraction, deep learning (DL) approaches have achieved promising performance in many clinical prediction tasks. However, due to the lack of interpretability and trustworthiness, it is difficult to apply DL in real clinical cases of decision making. To address this, in this paper, we propose an interpretable and trustworthy predictive model~(INPREM) for healthcare. Firstly, INPREM is designed as a linear model for interpretability while encoding non-linear relationships into the learning weights for modeling the dependencies between and within each visit. This enables us to obtain the contribution matrix of the input variables, which is served as the evidence of the prediction result(s), and help physicians understand why the model gives such a prediction, thereby making the model more interpretable. Secondly, for trustworthiness, we place a random gate (which follows a Bernoulli distribution to turn on or off) over each weight of the model, as well as an additional branch to estimate data noises. With the help of the Monto Carlo sampling and an objective function accounting for data noises, the model can capture the uncertainty of each prediction. The captured uncertainty, in turn, allows physicians to know how confident the model is, thus making the model more trustworthy. We empirically demonstrate that the proposed INPREM outperforms existing approaches with a significant margin. A case study is also presented to show how the contribution matrix and the captured uncertainty are used to assist physicians in making robust decisions. Xianli Zhang, Buyue Qian, Shilei Cao 0001, Yang Li 0139, Yefeng Zheng 0001, Ian Davidson |
KDD | 6 |
| 2005 | Handwriting Matching and Its Application to Handwriting SynthesisabstractSince it is extremely expensive to collect a large volume of handwriting samples, synthesized data are often used to enlarge the training set. We argue that, in order to generate good handwriting samples, a synthesis algorithm should learn the shape deformation characteristics of handwriting from real samples. In this paper, we present a point matching algorithm to learn the deformation, and apply it to handwriting synthesis. Preliminary experiments show the advantages of our approach. Yefeng Zheng 0001, David S. Doermann |
ICDAR | 1 |
| 2003 | A Model-based Line Detection Algorithm in DocumentsabstractIn this paper we present a novel model based approach to detect severely broken parallel lines in noisy textual documents. It is important to detect and remove these lines so the text can be segmented and recognized. We use directional single-connected chain, a vectorization based algorithm, to extract the line segments. We then instantiate a parallel line model with three parameters: the skew angle, the vertical line gap, and the vertical translation. A coarse-to-fine approach is used to improve the estimation accuracy. From the model we can incorporate the high level contextual information to enhance detection results even when lines are severely broken. Our experimental results show our method can detect 94% of the lines in our database with 168 noisy Arabic document images. Yefeng Zheng 0001, Huiping Li 0001, David S. Doermann |
ICDAR | 1 |
| 2003 | Text Identification in Noisy Document Images Using Markov Random FieldabstractIn this paper we address the problem of the identification of text from noisy documents. We segment and identify handwriting from machine printed text because 1) handwriting in a document often indicates corrections, additions or other supplemental information that should be treated differently from the main body or body content, and 2) the segmentation and recognition techniques for machine printed text and handwriting are significantly different. Our novelty is that we treat noise as a separate class and model noise based on selected features. Trained Fisher classifiers are used to identify machine printed text and handwriting from noise. We further exploit context to refine the classification. A Markov random field (MRF) based approach is used to model the geometrical structure of the printed text, handwriting and noise to rectify the mis-classification. Experimental results show our approach is promising and robust, and can significantly improve the page segmentation results in noise documents. Yefeng Zheng 0001, Huiping Li 0001, David S. Doermann |
ICDAR | 1 |
| 2002 | The Segmentation and Identification of Handwriting in Noisy Document Images
Yefeng Zheng 0001, Huiping Li 0001, David S. Doermann |
Document Analysis Systems | 1 |
| 2001 | Form Frame Line Detection with Directional Single-Connected ChainabstractIn this paper, a novel form frame line detection algorithm is proposed based on the directional single-connected chain (DSCC). Defined as an array of black pixel run-lengths, DSCC works very well as an image structure element or vector in our vectorization algorithm. By merging multiple DSCCs under some constraints, we are able to extract the form frame lines automatically yet fast. The speed of our algorithm is comparable with some well-known projection methods. Experiments show that our algorithm is fast, resistant to moderate serious line breaks and can detect diagonal lines with any angle. Yefeng Zheng 0001, Changsong Liu, Xiaoqing Ding, Shiyan Pan |
ICDAR | 1 |