Yi-Ping Phoebe Chen

dblp:c/YPPhoebeChen · also Phoebe Chen, Yiping Phoebe Chen · DBLP profile ↗
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31ranked-venue papers in the field
5as first author
8since 2021 · last 2024
0000-0002-4122-3767ORCID · verified

Domains — venue-derived; a paper can count in several

Database Systems & Data Management · 10 (1 first)Other / Interdisciplinary · 7Information Retrieval & Web Search · 6 (1 first)Knowledge Engineering, Semantic Web & Information Systems · 5 (2 first)Data Mining & Knowledge Discovery · 2 (1 first)Big Data, Cloud & Distributed Data Systems · 1
YearPublicationVenuePosition
2024 Diversity in Multimedia
abstract
Multimedia is a highly diverse discipline, a encompass of data types, research applications, research problems, approaches are integrated and implicated. Researchers in the domain get from very different specialties, applications ranging from digital health, transportation, energy, prediction, and discovery from different application domains. I will talk about how my research group could apply recent multimedia technologies into these importance of diversities fields.
Yi-Ping Phoebe Chen
ICMR1
2023 A Fast and More Accurate Seed-and-Extension Density-Based Clustering Algorithm
abstract
Clustering algorithms have been widely studied in many scientific areas, such as data mining, knowledge discovery, bioinformatics and machine learning. A density-based clustering algorithm, called density peaks (DP), which was proposed by Rodriguez and Laio, outperform almost all other approaches. Although the DP algorithm performs well in many cases, there is still room for improvement in the precision of its output clusters as well as the quality of the selected centers. In this study, we propose a more accurate clustering algorithm, seed-and-extension-based density peaks (SDP). SDP selects the centers that hold the features of their clusters while building a spanning forest, and meanwhile, constructs the output clusters in a seed-and-extension manner. Experiment results demonstrate the effectiveness of SDP, especially when dealing with clusters with relatively high densities. Precisely, we show that SDP is more accurate than the DP algorithm as well as other state-of-the-art clustering approaches concerning the quality of both output clusters and cluster centers while maintaining similar running time of the DP algorithm, particularly for a variety of time-series (i.e. non-metric) data. Moreover, SDP outperforms DP in the dynamic model in which data point insertion and deletion are allowed. From a practical perspective, the proposed SDP algorithm is obviously helpful to many application problems.
Ming-Hao Tung, Yi-Ping Phoebe Chen, Chen-Yu Liu, Chung-Shou Liao
IEEE Trans. Knowl. Data Eng.2
2023 Generative and Contrastive Self-Supervised Learning for Graph Anomaly Detection
abstract
Anomaly detection from graph data has drawn much attention due to its practical significance in many critical applications including cybersecurity, finance, and social networks. Existing data mining and machine learning methods are either shallow methods that could not effectively capture the complex interdependency of graph data or graph autoencoder methods that could not fully exploit the contextual information as supervision signals for effective anomaly detection. To overcome these challenges, in this paper, we propose a novel method, Self-Supervised Learning for Graph Anomaly Detection (SL-GAD). Our method constructs different contextual subgraphs (views) based on a target node and employs two modules,generative attribute regressionandmulti-view contrastive learningfor anomaly detection. While thegenerative attribute regressionmodule allows us to capture the anomalies in the attribute space, themulti-view contrastive learningmodule can exploit richer structure information from multiple subgraphs, thus abling to capture the anomalies in the structure space, mixing of structure, and attribute information. We conduct extensive experiments on six benchmark datasets and the results demonstrate that our method outperforms state-of-the-art methods by a large margin.
Yu Zheng 0013, Ming Jin 0005, Yixin Liu 0001, Lianhua Chi, Khoa Tran Phan, Yi-Ping Phoebe Chen
IEEE Trans. Knowl. Data Eng.6
2022 Fuzzy Information Measures Feature Selection Using Descriptive Statistics Data
Omar A. M. Salem, Yi-Ping Phoebe Chen, Xi Chen 0078
KSEM (3)4
2022 A comprehensive review of federated learning for COVID-19 detection
abstract
The coronavirus of 2019 (COVID-19) was declared a global pandemic by World Health Organization in March 2020. Effective testing is crucial to slow the spread of the pandemic. Artificial intelligence and machine learning techniques can help COVID-19 detection using various clinical symptom data. While deep learning (DL) approach requiring centralized data is susceptible to a high risk of data privacy breaches, federated learning (FL) approach resting on decentralized data can preserve data privacy, a critical factor in the health domain. This paper reviews recent advances in applying DL and FL techniques for COVID-19 detection with a focus on the latter. A model FL implementation use case in health systems with a COVID-19 detection using chest X-ray image data sets is studied. We have also reviewed applications of previously published FL experiments for COVID-19 research to demonstrate the applicability of FL in tackling health research issues. Last, several challenges in FL implementation in the healthcare domain are discussed in terms of potential future work.
Sadaf Naz, Khoa Tran Phan, Yi-Ping Phoebe Chen
Int. J. Intell. Syst.3
2021 Distractor-Aware Tracker with a Domain-Special Optimized Benchmark for Soccer Player Tracking
abstract
Player tracking in broadcast soccer videos has received widespread attention in the field of sports video analysis, however, we note that there is not a suitable tracking algorithm specifically for soccer video, and the existing benchmarks used for soccer player tracking cover few scenarios with low difficulties. From the observation of the soccer scene that interference and occlusion are knotty problems because the distractors are extremely similar to the targets, a distractor-aware player tracking algorithm and a high-quality benchmark for soccer play tracking (BSPT) have been presented. The distractor-aware player tracking algorithm is able to perceive semantic information about distracting players in the background by similarity judgment, the semantic distractor-aware information is encoded into a context vector and is constantly updated as the objects move through a video sequence. Distractor-aware information is then appended to the tracking result of the baseline tracker to improve the intra-class discriminative power. BSPT contains a total of 120 sequences with rich annotations. Each sequence covers 8 specialized frame-level attributes from soccer scenarios and the player occlusion situations are finely divided into 4 categories for a more comprehensive comparison. In the experimental section, the performance of our algorithm and the other 14 compared trackers are evaluated on BSPT with detailed analysis. Experimental results reveal the effectiveness of the proposed distractor-aware model especially under the attribute of occlusion. The BSPT benchmark and raw experimental results are available on the project page at http://media.hust.edu.cn/BSPT.htm.
Zikai Song, Zhiwen Wan, Junqing Yu, Yi-Ping Phoebe Chen
ICMR6
2021 Descriptive prediction of drug side-effects using a hybrid deep learning model
abstract
In this study, we developed a hybrid deep learning (DL) model, which is one of the first interpretable hybrid DL models with Inception modules, to give a descriptive prediction of drug side-effects. The model consists of a graph convolutional neural network (GCNN) with Inception modules to allow more efficient learning of drug molecular features and bidirectional long short-term memory (BiLSTM) recurrent neural networks to associate drug structure with its associated side effects. The outputs from the two networks (GCNN and BiLSTM) are then concatenated and a fully connected network is used to predict the side effects of drugs. Our model achieves an AUC score of 0.846 irrespective of what classification threshold is chosen. It has a precision score of 0.925 and the Bilingual Evaluation Understudy (BLEU) scores obtained were 0.973, 0.938, 0.927, and 0.318 which show significant achievements despite the fact that a small drug data set is used for adverse drug reaction (ADR) prediction. Moreover, the model is capable of accurately structuring correct words to describe drug side-effects and associates them with its drug name and molecular structure. The predicted drug structure and ADR relation will provide a reference for preclinical safety pharmacology studies and facilitate the identification of ADRs during early phases of drug development. It can also help detect unknown ADRs embedded in existing drugs, hence contributing significantly to the science of pharmacovigilance.
Chun Yen Lee, Yi-Ping Phoebe Chen
Int. J. Intell. Syst.2
2021 Machine learning for medical imaging-based COVID-19 detection and diagnosis
abstract
The novel coronavirus disease 2019 (COVID-19) is considered to be a significant health challenge worldwide because of its rapid human-to-human transmission, leading to a rise in the number of infected people and deaths. The detection of COVID-19 at the earliest stage is therefore of paramount importance for controlling the pandemic spread and reducing the mortality rate. The real-time reverse transcription-polymerase chain reaction, the primary method of diagnosis for coronavirus infection, has a relatively high false negative rate while detecting early stage disease. Meanwhile, the manifestations of COVID-19, as seen through medical imaging methods such as computed tomography (CT), radiograph (X-ray), and ultrasound imaging, show individual characteristics that differ from those of healthy cases or other types of pneumonia. Machine learning (ML) applications for COVID-19 diagnosis, detection, and the assessment of disease severity based on medical imaging have gained considerable attention. Herein, we review the recent progress of ML in COVID-19 detection with a particular focus on ML models using CT and X-ray images published in high-ranking journals, including a discussion of the predominant features of medical imaging in patients with COVID-19. Deep Learning algorithms, particularly convolutional neural networks, have been utilized widely for image segmentation and classification to identify patients with COVID-19 and many ML modules have achieved remarkable predictive results using datasets with limited sample sizes.
Rokaya Rehouma, Michael Buchert, Yi-Ping Phoebe Chen
Int. J. Intell. Syst.3
2018 Linguistic Patterns and Cross Modality-based Image Retrieval for Complex Queries
abstract
With the rising prevalence of social media, coupled with the ease of sharing images, people with specific needs and applications such as known item search, multimedia question answering, etc., have started searching for visual content, which is expressed in terms of complex queries. A complex query consists of multiple concepts and their attributes are arranged to convey semantics. It is less effective to answer such queries by simply appending the search results gathered from individual or subsets of concepts present in the query. In this paper, we propose to exploit the query constituents and relationships among them. The proposed approach finds image-query relevance by integrating three models - the linguistic pattern-based textual model, the visual model, and the cross modality model. We extract linguistic patterns from complex queries, gather their related crawled images, and assign relevance scores to images in the corpus. The relevance scores are then used to rank the images. We experiment on more than 140k images and compare the [email protected] scores with the state-of-the-art image ranking methods for complex queries. Also, ranking of images obtained by our approach outperforms than that of obtained by a popular search engine.
Chandramani Chaudhary, Poonam Goyal, Joel Ruben Antony Moniz, Navneet Goyal, Yi-Ping Phoebe Chen
ICMR5
2018 GCOTraj: A storage approach for historical trajectory data sets using grid cells ordering
Shengxun Yang, Zhen He 0002, Yi-Ping Phoebe Chen
Inf. Sci.3
2017 Exploiting visual and textual neighborhood information to improve image-tag relevance
abstract
Many applications, such as image searching, image indexing, and image label recommendations, have started using tagged images to benefit from user input. However, tags tend to be imprecise, incomplete, and ambiguous. Moreover, tags are also biased towards the user's perspective which degrades the performance of tag-based systems. Most of the existing methods use visual neighborhoods and/or tags to estimate image-tag relevance. We improve image-tag relevance by combining visual neighborhood of images and textual neighborhood of tags. By doing this, we boost the ranking of informative tags of an image. Most of the image-tag relevance measures work well when large supporting data is available, which is typically not sufficient in real datasets. This problem of Void of Information (VoI) is addressed by exploiting tags of visual neighbors of the images. We also exploit external resources like Wikipedia and WordNet to strengthen the tags. The proposed approach, TVNTag (Textual Visual Neighborhood based Tag) exhibits up to 46.1% relative improvement in tag ranking and 79.5% in image ranking, with respect to the current state-of-the-art methods. The experiments are conducted for different tasks and evaluation scenarios on benchmarked social data, such as MIRFlickr, NUS-WIDE, and train10k.
Chandramani Chaudhary, Poonam Goyal, Yi-Ping Phoebe Chen
IEEE BigData3
2016 PaMeCo join: A parallel main memory compact hash join
Steven Keith Begley, Zhen He 0002, Yi-Ping Phoebe Chen
Inf. Syst.3
2016 Workload-Based Ordering of Multi-Dimensional Data
abstract
Transforming multi-dimensional data into a one-dimensional sequence using space-filling curves such as the Hilbert curve, the Gray curve, and the Z-curve has been studied extensively. These techniques are not sensitive to data or workload skewness, however, in practice, user-access patterns and data distributions are often very skewed in high dimensional space. It is desirable to produce a one-dimensional sequence which keeps the multi-dimensional grid cells that are queried together close to each other. This generates sequences with higher spatial locality. We propose a workload-based approach to produce one-dimensional ordering from multi-dimensional data in this paper. An extensive experimental evaluation suggests that our approach produces a high quality ordering sequence which outperforms the existing state-of-the-art Hilbert curve by a factor of 4.84, the Gray curve by a factor of 6.66, and the Z-curve by a factor of 7.26 for the number of subsequences used to answer a query; and for IO time, it outperforms the Hilbert curve by a factor of 2.20, the Gray curve by a factor of 2.25, and the Z-curve by 2.38.
Shengxun Yang, Zhen He 0002, Yi-Ping Phoebe Chen
IEEE Trans. Knowl. Data Eng.3
2012 MCJoin: a memory-constrained join for column-store main-memory databases
abstract
There exists a need for high performance, read-only main-memory database systems for OLAP-style application scenarios. Most of the existing works in this area are centered around the domain of column-store databases, which are particularly well suited to OLAP-style scenarios and have been shown to overcome the memory bottleneck issues that have been found to hinder the more traditional row-store database systems. One of the main database operations these systems are focused on optimizing is the JOIN operation. However, all these existing systems use join algorithms that are designed with the unrealistic assumption that there is unlimited temporary memory available to perform the join. In contrast, we propose a Memory Constrained Join algorithm (MCJoin) which is both high performing and also performs all of its operations within a tight given memory constraint. Extensive experimental results show that MCJoin outperforms a naive memory constrained version of the state-of-the-art Radix-Clustered Hash Join algorithm in all of the situations tested, with margins of up to almost 500%.
Steven Keith Begley, Zhen He 0002, Yi-Ping Phoebe Chen
SIGMOD Conference3
2009 Acoustic feature selection for automatic emotion recognition from speech
Jia Rong, Gang Li 0009, Yi-Ping Phoebe Chen
Inf. Process. Manag.3
2009 Candidate working set strategy based SMO algorithm in support vector machine
Yi-Ping Phoebe Chen, Bin Jiang 0001
Inf. Process. Manag.3
2009 Discovery of Structural and Functional Features in RNA Pseudoknots
abstract
An RNA pseudoknot consists of nonnested double-stranded stems connected by single-stranded loops. There is increasing recognition that RNA pseudoknots are one of the most prevalent RNA structures and fulfill a diverse set of biological roles within cells, and there is an expanding rate of studies into RNA pseudoknotted structures as well as increasing allocation of function. These not only produce valuable structural data but also facilitate an understanding of structural and functional characteristics in RNA molecules. PseudoBase is a database providing structural, functional, and sequence data related to RNA pseudoknots. To capture the features of RNA pseudoknots, we present a novel framework using quantitative association rule mining to analyze the pseudoknot data. The derived rules are classified into specified association groups regarding structure, function, and category of RNA pseudoknots. The discovered association rules assist biologists in filtering out significant knowledge of structure-function and structure-category relationships. A brief biological interpretation to the relationships is presented, and their potential correlations with each other are highlighted.
Qingfeng Chen, Yi-Ping Phoebe Chen
IEEE Trans. Knowl. Data Eng.2
2007 Learning Dependency Model for AMP-Activated Protein Kinase Regulation
Yi-Ping Phoebe Chen, Qiumei Qin, Qingfeng Chen
KSEM1
2007 Identifying Dependency Between Secure Messages for Protocol Analysis
Qingfeng Chen, Shichao Zhang 0001, Yi-Ping Phoebe Chen
KSEM3
2007 Detecting inconsistency in biological molecular databases using ontologies
Qingfeng Chen, Yi-Ping Phoebe Chen, Chengqi Zhang
Data Min. Knowl. Discov.2
2006 Detecting Collusion Attacks in Security Protocols
Qingfeng Chen, Yi-Ping Phoebe Chen, Shichao Zhang 0001, Chengqi Zhang
APWeb2
2006 Finding Short Patterns to Classify Text Documents
abstract
Many classification methods have been proposed to find patterns in text documents. However, according to Occam's razor principle, "the explanation of any phenomenon should make as few assumptions as possible", short patterns usually have more explainable and meaningful for classifying text documents. In this paper, we propose a depth-first pattern generation algorithm, which can find out short patterns from text document more effectively, comparing with breadth-first algorithm
Jiyuan An, Yi-Ping Phoebe Chen
Web Intelligence2
2006 An evolutionary learning approach for adaptive negotiation agents
abstract
Developing effective and efficient negotiation mechanisms for real-world applications such as e-business is challenging because negotiations in such a context are characterized by combinatorially complex negotiation spaces, tough deadlines, very limited information about the opponents, and volatile negotiator preferences. Accordingly, practical negotiation systems should be empowered by effective learning mechanisms to acquire dynamic domain knowledge from the possibly changing negotiation contexts. This article illustrates our adaptive negotiation agents, which are underpinned by robust evolutionary learning mechanisms to deal with complex and dynamic negotiation contexts. Our experimental results show that GA-based adaptive negotiation agents outperform a theoretically optimal negotiation mechanism that guarantees Pareto optimal. Our research work opens the door to the development of practical negotiation systems for real-world applications. © 2006 Wiley Periodicals, Inc. Int J Int Syst 21: 41–72, 2006.
Raymond Y. K. Lau, Maolin Tang, On Wong, Stephen Milliner, Yi-Ping Phoebe Chen
Int. J. Intell. Syst.5
2006 MDSM: Microarray database schema matching using the Hungarian method
Yi-Ping Phoebe Chen, Supawan Prompramote, Frédéric Maire
Inf. Sci.1
2005 A New Indexing Method for High Dimensional Dataset
Jiyuan An, Yi-Ping Phoebe Chen, Qinying Xu, Xiaofang Zhou 0001
DASFAA2
2005 DDR: an index method for large time-series datasets
Jiyuan An, Yi-Ping Phoebe Chen, Hanxiong Chen
Inf. Syst.2
2004 A Grid-Based Index Method for Time Warping Distance
Jiyuan An, Yi-Ping Phoebe Chen, Eamonn J. Keogh
WAIM2
2004 Concept Learning of Text Documents
abstract
Concept learning of text documents can be viewed as the problem of acquiring the definition of a general category of documents. To definite the category of a text document, the Conjunctive of keywords is usually be used. These keywords should be fewer and comprehensible. A naïve method is enumerating all combinations of keywords to extract suitable ones. However, because of the enormous number of keyword combinations, it is impossible to extract the most relevant keywords to describe the categories of documents by enumerating all possible combinations of keywords. Many heuristic methods are proposed, such as GA-base, immune based algorithm. In this work, we introduce pruning power technique and propose a robust enumeration-based concept learning algorithm. Experimental results show that the rules produce by our approach has more comprehensible and simplicity than by other methods.
Jiyuan An, Yi-Ping Phoebe Chen
Web Intelligence2
2004 Automatic Pattern-Taxonomy Extraction for Web Mining
abstract
In this paper, we propose a model for discovering frequent sequential patterns, phrases, which can be used as profile descriptors of documents. It is indubitable that we can obtain numerous phrases using data mining algorithms. However, it is difficult to use these phrases effectively for answering what users want. Therefore, we present a pattern taxonomy extraction model which performs the task of extracting descriptive frequent sequential patterns by pruning the meaningless ones. The model then is extended and tested by applying it to the information filtering system. The results of the experiment show that pattern-based methods outperform the keyword-based methods. The results also indicate that removal of meaningless patterns not only reduces the cost of computation but also improves the effectiveness of the system.
Sheng-Tang Wu, Yuefeng Li 0001, Yue Xu 0001, Binh Pham 0001, Yi-Ping Phoebe Chen
Web Intelligence5
2003 Database Technologies for L-System Simulations in Virtual Plant Applications on Bioinformatics
Yi-Ping Phoebe Chen, Robert M. Colomb
Knowl. Inf. Syst.1
1999 DML: A Bridge between Database Systems and L-Systems for Biological Research
abstract
Presents DML (Data Model tools for L-systems). This work combines a novel application area with databases in bioinformatics. DML allows the specification of database structures and queries in terms of objects and relations that are specific to scientific L-system applications. L-systems have been used in many scientific areas. However, not much consideration has been given to persistent storage and querying of the large quantities of data resulting from these L-system simulations. Major limitations of current database products mean that they cannot support the mapping between L-systems and database systems. We find it hard to use any of the existing database products to build a system to satisfy the needs of researchers using L-systems. The research presented in this paper focuses on providing a bridge between L-systems and database systems. The work contributes a schema generator and population translator from L-systems to database systems in the scientific area of generic branching structures.
Yi-Ping Phoebe Chen
SSDBM1