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Michael Milton

dblp:06/971 · DBLP profile ↗
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1ranked-venue papers
1as first author
1since 2021 · last 2021
0000-0002-8965-2595ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 1 heaviest of 1, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
bioinformatics workflow		 0.512021
aCLImatise: automated generation of tool definitions for bioinformatics workflows · Bioinform. 2021

Methods — techniques the papers use, named apart from their topics

workflow language integration · 0.5command-line parsing · 0.5
YearPublicationVenuePosition
2021 aCLImatise: automated generation of tool definitions for bioinformatics workflows
abstract
SUMMARY: aCLImatise is a utility for automatically generating tool definitions compatible with bioinformatics workflow languages, by parsing command-line help output. aCLImatise also has an associated database called the aCLImatise Base Camp, which provides thousands of pre-computed tool definitions. AVAILABILITY AND IMPLEMENTATION: The latest aCLImatise source code is available within a GitHub organisation, under the GPL-3.0 license: https://github.com/aCLImatise. In particular, documentation for the aCLImatise Python package is available at https://aclimatise.github.io/CliHelpParser/, and the aCLImatise Base Camp is available at https://aclimatise.github.io/BaseCamp/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Michael Milton, Natalie Thorne
 Bioinform.1