Demonstration venue · read-only. Every page can be browsed; the buttons that would change it are switched off. Create an account to run TaxoReview on your own data. A simulation from public publication records: the people listed were not invited and did not agree to review.
? Tutorial for this page

Donald R. Forsdyke

dblp:10/6380 · DBLP profile ↗
← Back
1ranked-venue papers
1as first author
0since 2021 · last 2002
0000-0002-4844-1417ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis
genomic sequence analysis
0.012002
Symmetry observations in long nucleotide sequences: a commentary on the Discovery Note of Qi and Cuticchia · Bioinform. 2002
Bioinformatics and computational biology › sequence analysis › k-mer analysis
oligonucleotide frequency analysis
0.012002
Symmetry observations in long nucleotide sequences: a commentary on the Discovery Note of Qi and Cuticchia · Bioinform. 2002
YearPublicationVenuePosition
2002 Symmetry observations in long nucleotide sequences: a commentary on the Discovery Note of Qi and Cuticchia
abstract
The relative quantities of bases in DNA were determined chemically many years before sequencing technologies permitted direct counting of bases. Apparently unaware of the rich literature on the topic, bioinformaticists are today rediscovering the 'wheels' of Chargaff, Wyatt and other biochemists. It follows from Chargaff's second parity rule (%A = %T, %G = %C for single stranded DNA) that the symmetries observed for the two pairs of complementary mononucleotide bases, should also apply to the eight pairs of complementary dinucleotide bases, the thirty-two pairs of complementary trinucleotide bases, etc. This was made explicit by Prabhu in 1993 in a study of complete genomes and long genome segments from a wide range of taxa, and was rediscovered by Qi and Cuticchia in 2001 in a study of complete genomes. It follows from Chargaff's GC-rule (%GC tends to be uniform and species specific) that, within a species, oligonucleotides of the same GC% will be at approximately equal quantities in single stranded DNA. Thus, for example, while quantities of CAT and ATG (reverse complements) will be closely correlated because of both of the above Chargaff rules, CAT and GTA (forward complements) will show some correlation only because of the latter rule. The need for complete genomic sequences in bioinformatic analyses may have been somewhat overplayed.
Donald R. Forsdyke
Bioinform.1