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Stéphane Aymerich

dblp:119/6497 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2012
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
gene expression analysis
0.112012
BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array · Bioinform. 2012
Bioinformatics and computational biology › gene regulation › promoter analysis
promoter activity estimation
0.112012
BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array · Bioinform. 2012

Methods — techniques the papers use, named apart from their topics

kalman filter · 0.1discrete filtering · 0.1
YearPublicationVenuePosition
2012 BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array
abstract
UNLABELLED: Live Cell Array (LCA) technology allows the acquisition of high-resolution time-course profiles of bacterial gene expression by the systematic assessment of fluorescence in living cells carrying either transcriptional or translational fluorescent protein fusion. However, the direct estimation of promoter activities by time-dependent derivation of the fluorescence datasets generates high levels of noise. Here, we present BasyLiCA, a user-friendly open-source interface and database dedicated to the automatic storage and standardized treatment of LCA data. Data quality reports are generated automatically. Growth rates and promoter activities are calculated by tunable discrete Kalman filters that can be set to incorporate data from biological replicates, significantly reducing the impact of noise measurement in activity estimations. AVAILABILITY: The BasyLiCA software and the related documentation are available at http://genome.jouy.inra.fr/basylica.
Leslie Aïchaoui, Matthieu Jules, Ludovic Le Chat, Stéphane Aymerich, Vincent Fromion, Anne Goelzer
Bioinform.4