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K. U. Frohlich

dblp:13/6276 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 1994
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence alignment
sequence alignment visualization
0.011994
Sequence Similarity Presenter: a tool for the graphic display of similarities of long sequences for use in presentations · Comput. Appl. Biosci. 1994
Bioinformatics and computational biology
sequence analysis
0.011994
Sequence Similarity Presenter: a tool for the graphic display of similarities of long sequences for use in presentations · Comput. Appl. Biosci. 1994
Bioinformatics and computational biology
sequence alignment
0.011994
Sequence Similarity Presenter: a tool for the graphic display of similarities of long sequences for use in presentations · Comput. Appl. Biosci. 1994

Methods — techniques the papers use, named apart from their topics

sliding-window identity averaging · 0.0
YearPublicationVenuePosition
1994 Sequence Similarity Presenter: a tool for the graphic display of similarities of long sequences for use in presentations
abstract
A new method for the presentation of alignments of long sequences is described. The degree of identity for the aligned sequences is averaged for sections of a fixed number of residues. The resulting values are converted to shades of gray, with white corresponding to lack of identity and black corresponding to perfect identity. A sequence alignment is represented as a bar filled with varying shades of gray. The display is compact and allows for a fast and intuitive recognition of the distribution of regions with a high similarity. It is well suited for the presentation of alignments of long sequences, e.g. of protein superfamilies, in plenary lectures. The method is implemented as a HyperCard stack for Apple Macintosh computers. Several options for the modification of the output are available (e.g. background reduction, size of the summation window, consideration of amino acid similarity, inclusion of graphic markers to indicate specific domains). The output is a PostScript file which can be printed, imported as EPS or processed further with Adobe Illustrator.
K. U. Frohlich
Comput. Appl. Biosci.1