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J. T. Gallimore

dblp:139/1615 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2014
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › systems biology
model reuse
0.212014
A C library for retrieving specific reactions from the BioModels database · Bioinform. 2014
Bioinformatics and computational biology › systems biology › SBML
SBML model annotation
0.212014
A C library for retrieving specific reactions from the BioModels database · Bioinform. 2014
Bioinformatics and computational biology
systems biology
0.212014
A C library for retrieving specific reactions from the BioModels database · Bioinform. 2014

Methods — techniques the papers use, named apart from their topics

string search · 0.2semantic annotation · 0.2
YearPublicationVenuePosition
2014 A C library for retrieving specific reactions from the BioModels database
abstract
SUMMARY: We describe libSBMLReactionFinder, a C library for retrieving specific biochemical reactions from the curated systems biology markup language models contained in the BioModels database. The library leverages semantic annotations in the database to associate reactions with human-readable descriptions, making the reactions retrievable through simple string searches. Our goal is to provide a useful tool for quantitative modelers who seek to accelerate modeling efforts through the reuse of previously published representations of specific chemical reactions. AVAILABILITY AND IMPLEMENTATION: The library is open-source and dual licensed under the Mozilla Public License Version 2.0 and GNU General Public License Version 2.0. Project source code, downloads and documentation are available at http://code.google.com/p/lib-sbml-reaction-finder.
Maxwell Lewis Neal, Michal Galdzicki, J. T. Gallimore, Herbert M. Sauro
Bioinform.3