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Amal Farag

dblp:149/2750 · DBLP profile ↗
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7ranked-venue papers
1as first author
0since 2021 · last 2019
0000-0001-6307-9199ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Graphics, computer vision, multimedia, augmented reality and games · 5 · 1 first-authorApplied, interdisciplinary, general and emerging computing · 3Human-computer interaction and ubiquitous computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Medical and health informatics · 100%
Computer graphics and multimedia
1 paper
Image and video processing · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Medical and health informatics › medical imaging
medical image analysis
0.312017
A Bottom-Up Approach for Pancreas Segmentation Using Cascaded Superpixels and (Deep) Image Patch Labeling · IEEE Trans. Image Process. 2017
Medical and health informatics › medical imaging › medical image analysis › medical image segmentation
organ segmentation
0.312017
A Bottom-Up Approach for Pancreas Segmentation Using Cascaded Superpixels and (Deep) Image Patch Labeling · IEEE Trans. Image Process. 2017
Image and video processing
image segmentation
0.312017
A Bottom-Up Approach for Pancreas Segmentation Using Cascaded Superpixels and (Deep) Image Patch Labeling · IEEE Trans. Image Process. 2017
Image and video processing › image segmentation
superpixel segmentation
0.312017
A Bottom-Up Approach for Pancreas Segmentation Using Cascaded Superpixels and (Deep) Image Patch Labeling · IEEE Trans. Image Process. 2017

Methods — techniques the papers use, named apart from their topics

superpixel · 0.6random forest · 0.6multi-atlas label fusion · 0.6convolutional neural network · 0.6
YearPublicationVenuePosition
2019 Measuring Student Engagement Level Using Facial Information
abstract
In this paper, we propose a novel framework that measures the engagement level of students either in a class environment or in an e-learning environment. The proposed framework captures the user's video and tracks their faces' through the video's frames. Different features are extracted from the user's face e.g., facial fiducial points, head pose, eye gaze, learned features, etc. These features are then used to detect the Facial Action Coding System (FACS), which decomposes facial expressions in terms of the fundamental actions of individual muscles or groups of muscles (i.e., action units). The decoded action units (AUs) are then used to measures the student's willingness to participate in the learning process (i.e., behavioral engagement) and his/her emotional attitude towards learning (i.e., emotional engagement). This framework will allow the lecturer to receive a real-time feedback from facial features, gaze, and other body kinesics. The framework is robust and can be utilized in numerous applications including but not limited to the monitoring the progress of students with various degrees of learning disabilities, and the analysis of nerve palsy and its effects on facial expression and social interactions.
Islam Alkabbany, Asem M. Ali, Amal Farag, Ian Bennett, Mohamad Ghanoum, Aly A. Farag
ICIP3
2018 Fly-In Visualization for Virtual Colonoscopy
abstract
In this paper, a new visualization method for tubular inner surfaces is proposed, denoted by “Fly-In”. The approach uses a virtual camera that moves along the inner surface's centerline, obtaining projections of the surrounding view, formed of small 3D topological rings, within the tube that is rendered as a 2D rectangular image. A new visualization loss measure is also presented, which utilizes the projection direction of the camera axis, the surface normal and the ratio of the camera focal length and the surface distance. A comparative study of Fly-in versus two state-of-the-art methods (Fly-Through and Fly-Over) is conducted on 3D reconstructed colons from CT Colonography (CTC) patient data. Quantitative results are computed using the new loss measure and visualized using color coding. Results show high performance for the proposed Fly-In approach with respect to the state-of-art.
Mostafa Mohamad, Amal Farag, Asem M. Ali, Salwa Elshazly, Aly A. Farag, Mohamad Ghanoum
ICIP2
2018 Spatial aggregation of holistically-nested convolutional neural networks for automated pancreas localization and segmentation
Holger Roth, Le Lu 0001, Nathan Lay, Adam P. Harrison, Amal Farag, Andrew Sohn, Ronald M. Summers
Medical Image Anal.5
2017 Facial action units detection under pose variations using deep regions learning
abstract
A set of facial Action Units (AUs) is activated due to the movement of facial muscles in response to a person's internal emotion. The activated facial action units appear around sparse regions on the face e.g., the mouth and eyes. This group occurrence of AUs reveals the semantic relationships among them. These relationships should be considered in the detection process of AUs. Therefore, we propose an approach that learns these semantic relationships using a multi-label deep learning architecture. The sparse patches of the AUs are used in the proposed approach instead of the whole facial region. To handle these sparse patches, we propose a region-based network instead of the well-known convolutional network and the locally connected network. Moreover, unlike the current approaches, which define facial regions using a uniform grid, the proposed region-based architecture, define patches around facial landmarks. This overcomes the region displacement problem of the uniform grid. Usually, the AUs classification suffers from the high skewness factor problem. To overcome this problem, we use a weighted loss function. We conduct our experiments on two standard benchmarks: BP4D and FERA17. f1score, the area under the ROC (AROC) and the area under the precision-recall curve (APR) are used as performance measures. Compared to the standard convolutional layer, the proposed patch-based layer is more effective in capturing the required structural features of the face and learns the correlations among AUs under pose variations. Also, it has been shown that the proposed approach outperforms the state-of-the-art methods.
Asem M. Ali, Islam Alkabbany, Amal Farag, Ian Bennett, Aly A. Farag
ACII3
2017 A Bottom-Up Approach for Pancreas Segmentation Using Cascaded Superpixels and (Deep) Image Patch Labeling
abstract
Robust organ segmentation is a prerequisite for computer-aided diagnosis, quantitative imaging analysis, pathology detection, and surgical assistance. For organs with high anatomical variability (e.g., the pancreas), previous segmentation approaches report low accuracies, compared with well-studied organs, such as the liver or heart. We present an automated bottom-up approach for pancreas segmentation in abdominal computed tomography (CT) scans. The method generates a hierarchical cascade of information propagation by classifying image patches at different resolutions and cascading (segments) superpixels. The system contains four steps: 1) decomposition of CT slice images into a set of disjoint boundary-preserving superpixels; 2) computation of pancreas class probability maps via dense patch labeling; 3) superpixel classification by pooling both intensity and probability features to form empirical statistics in cascaded random forest frameworks; and 4) simple connectivity based post-processing. Dense image patch labeling is conducted using two methods: efficient random forest classification on image histogram, location and texture features; and more expensive (but more accurate) deep convolutional neural network classification, on larger image windows (i.e., with more spatial contexts). Over-segmented 2-D CT slices by the simple linear iterative clustering approach are adopted through model/parameter calibration and labeled at the superpixel level for positive (pancreas) or negative (non-pancreas or background) classes. The proposed method is evaluated on a data set of 80 manually segmented CT volumes, using six-fold cross-validation. Its performance equals or surpasses other state-of-the-art methods (evaluated by "leave-one-patient-out"), with a dice coefficient of 70.7% and Jaccard index of 57.9%. In addition, the computational efficiency has improved significantly, requiring a mere 6 ~ 8 min per testing case, versus ≥ 10 h for other methods. The segmentation framework using deep patch labeling confidences is also more numerically stable, as reflected in the smaller performance metric standard deviations. Finally, we implement a multi-atlas label fusion (MALF) approach for pancreas segmentation using the same data set. Under six-fold cross-validation, our bottom-up segmentation method significantly outperforms its MALF counterpart: 70.7±13.0% versus 52.51±20.84% in dice coefficients.
Amal Farag, Le Lu 0001, Holger Roth, Evrim Turkbey, Ronald M. Summers
IEEE Trans. Image Process.1
2016 Spatial Aggregation of Holistically-Nested Networks for Automated Pancreas Segmentation
Holger Roth, Le Lu 0001, Amal Farag, Andrew Sohn, Ronald M. Summers
MICCAI (2)3
2015 DeepOrgan: Multi-level Deep Convolutional Networks for Automated Pancreas Segmentation
Holger Roth, Le Lu 0001, Amal Farag, Hoo-Chang Shin, Evrim Turkbey, Ronald M. Summers
MICCAI (1)3