Demo Data from SIGIR 2026 / reviewers in the wild / expert
Thomas W. Spiesser
dblp:151/5751
· DBLP profile ↗
2ranked-venue papers
1as first author
0since 2021 · last 2015
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 2 · 1 first-author
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology › systems biology › metabolic network analysis
metabolic control analysis |
0.2 | 1 | 2014 | SensA: web-based sensitivity analysis of SBML models · Bioinform. 2014 |
Bioinformatics and computational biology › systems biology
dynamical system modeling |
0.1 | 1 | 2014 | SensA: web-based sensitivity analysis of SBML models · Bioinform. 2014 |
Methods — techniques the papers use, named apart from their topics
time-dependent sensitivity analysis · 0.2metabolic control analysis · 0.2local sensitivity analysis · 0.2global sensitivity analysis · 0.2
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2015 | Bud-Localization of CLB2 mRNA Can Constitute a Growth Rate Dependent Daughter SizerabstractMaintenance of cellular size is a fundamental systems level process that requires balancing of cell growth with proliferation. This is achieved via the cell division cycle, which is driven by the sequential accumulation and destruction of cyclins. The regulatory network around these cyclins, particularly in G1, has been interpreted as a size control network in budding yeast, and cell size as being decisive for the START transition. However, it is not clear why disruptions in the G1 network may lead to altered size rather than loss of size control, or why the S-G2-M duration also depends on nutrients. With a mathematical population model comprised of individually growing cells, we show that cyclin translation would suffice to explain the observed growth rate dependence of cell volume at START. Moreover, we assess the impact of the observed bud-localisation of the G2 cyclin CLB2 mRNA, and find that localised cyclin translation could provide an efficient mechanism for measuring the biosynthetic capacity in specific compartments: The mother in G1, and the growing bud in G2. Hence, iteration of the same principle can ensure that the mother cell is strong enough to grow a bud, and that the bud is strong enough for independent life. Cell sizes emerge in the model, which predicts that a single CDK-cyclin pair per growth phase suffices for size control in budding yeast, despite the necessity of the cell cycle network around the cyclins to integrate other cues. Size control seems to be exerted twice, where the G2/M control affects bud size through bud-localized translation of CLB2 mRNA, explaining the dependence of the S-G2-M duration on nutrients. Taken together, our findings suggest that cell size is an emergent rather than a regulatory property of the network linking growth and proliferation. Thomas W. Spiesser, Clemens Kühn, Marcus Krantz, Edda Klipp |
PLoS Comput. Biol. | 1 |
| 2014 | SensA: web-based sensitivity analysis of SBML modelsabstractSUMMARY: SensA is a web-based application for sensitivity analysis of mathematical models. The sensitivity analysis is based on metabolic control analysis, computing the local, global and time-dependent properties of model components. Interactive visualization facilitates interpretation of usually complex results. SensA can contribute to the analysis, adjustment and understanding of mathematical models for dynamic systems. AVAILABILITY AND IMPLEMENTATION: SensA is available at http://gofid.biologie.hu-berlin.de/ and can be used with any modern browser. The source code can be found at https://bitbucket.org/floettma/sensa/ (MIT license) Max Flöttmann, Jannis Uhlendorf, Till Scharp, Edda Klipp, Thomas W. Spiesser |
Bioinform. | 5 |